cluster # 7922

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Schistosoma mansoni
cluster # 7922 cluster # 7922 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7922#0 length = 711 sequences # 4

consensus_7922#1 length = 329 sequences # 1
consensus_7922#2 length = 105 sequences # 1

consensusID : consensus_7922#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 711
fasta sequence

                              [AAAAACACGCAAGCATATTTTTGTGCATTACAATCTATAAATGCCTCAGTATTAATTTACAAAATAACACTAATGAATTAAAATGCACACGTGTCAAAAACTGCTGAGCTTTTATTTGAGGTCAGATAGACAAAATAATGTAAAAAATTGTTATAACCGATGAAAACATTGAAACGCAAATGTTGGACACTAGAAACAGATCTCACAAATATGATCTAATGGAAGATATAGCACGGAAGTGAATGTCAAAACGAAGACAAAGAAAGAAAATAATTCNCTATTTACTACCATGAAAAATAATAATTCAAGCTAAAAACAATCAAAACACTCAAAATACCCACCAAGCAAATATCTCATATCATCTTCCTACAACATCATCAACTCCAAAAGACTCATTAACACCACCTAAAAACATAAAACAAACAAACATTCAATTTACTCATTTCACAAATATTAACAAGACAAATCGCTAATATCATTAACAGTAAAGTAACATCGCTCCATCTCTCACTCTGCTTTCAGATCTAAATCCAATACAACACTGTTTGTTCACAAACAAACAGTTCATAGTGGTGCATGTAGATATCATCACAGATTTATTGATCCATTAACTACCACACTATCAATTTCACACAAACACTAAATCCTATCATCACATCACCTCTCCCTCAGACACTATCAATATCTATATCATTAGAAAATCAAAACCCA]

[+] EMBL CD110765             [AAAAACACGCAAGCATATTTTTGTGCATTACAATCTATAAATGCCTCAGTATTAATTTACAAAATAACACTAATGAATTAAAATGCACACGTGTCAAAAACTGCTGAGCTTTTATTTGAGGTCAGATAGACAAAATAATGTAAAAAATTGTTATAACCGATGAAAACATTGAAACGCAAATGTTGGACACTAGAAACAGATCTCACAAATATGATCTAATGGAAGATATAGCACGGAAGTGAATGTCAAAACGAAGACAAAGAAAGAAAATAATTCNCTATTTACTACCATGAA                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD147707             [                                                                                                                                     AATAATGTAAAAAATTGTTATAACCGATGAAAACATAGGAACGCAAATGTTGGACACTAGAAACAGATCTCACAAATATGATCTAATGGAAGATATAGCACGGAAGTGAATGTCAAAACGAAGACAAAGAAAGAAAATAATTCACTATTTACTACCATGAAAAATAATAATTCAAGCTAAAAACAATCAAAACACTCAAAATACCCACCAAGCAAATATCTCATATCATCTTCCTACAACATCATCAACTCCAAAAGACTCATTAACACCACCTAAAAACATAAAACAAACAAACATTCAATTTACTCATTTCACAAATATTAACAAGACAAATCGCTAATATCATTAACAGTAAAGTAACATCCTTCCCTCTCTCA                                                                                                                                                                                                         ]
[-] EMBL CD155181             [                                                                                                                                                                                                                                                                                                                                                                CTCATATCATCTTCCTACAACATCATCAACTCCAAAAGACTCATTAACACCACCTAAAAACATAAAACAAACAAACATTCAATTTACTCATTTCACAAATATTAACAAGACAAATCGCTAATATCATTAACAGTAAAGTAACATCGCTCCATCTCTCACTCTGCTTTCAGATCTAAATCCAATACAACACTGTTTGTTCACAAACAAACAGTTCATAGTGGTGCATGTAGATATCATCACAGATTTATTGATCCATTAACTACCACACTATCAATTTCACACAAACACTAAATCCTATCATCACATCACCTCTCCCTCAGACACTATCAATATCTATATCATTAGAAAATCAAAACCCA]
[-] EMBL CD134901             [                                                                                                                                                                                                                                                                                                                                                                                                  AAAGACTCATTAACACCACCTAAAAACATAAAACAAACAAACATTCAATTTACTCATTTCACAAATATTAACAAGACAAATCGCTAATATCATTAACAGTAAAGTAACATCGCTCCATCTCTCACTCTGCTTTCAGATCTAAATCCAATACAACACTGTTTGTTCACAAACAAACAATTCATAGTGGTGCATGTAGATATCATCACAGATTTATTGATCCATTAACTACC                                                                                               ]




>consensus_7922#0
AAAAACACGCAAGCATATTTTTGTGCATTACAATCTATAAATGCCTCAGTATTAATTTAC
AAAATAACACTAATGAATTAAAATGCACACGTGTCAAAAACTGCTGAGCTTTTATTTGAG
GTCAGATAGACAAAATAATGTAAAAAATTGTTATAACCGATGAAAACATTGAAACGCAAA
TGTTGGACACTAGAAACAGATCTCACAAATATGATCTAATGGAAGATATAGCACGGAAGT
GAATGTCAAAACGAAGACAAAGAAAGAAAATAATTCNCTATTTACTACCATGAAAAATAA
TAATTCAAGCTAAAAACAATCAAAACACTCAAAATACCCACCAAGCAAATATCTCATATC
ATCTTCCTACAACATCATCAACTCCAAAAGACTCATTAACACCACCTAAAAACATAAAAC
AAACAAACATTCAATTTACTCATTTCACAAATATTAACAAGACAAATCGCTAATATCATT
AACAGTAAAGTAACATCGCTCCATCTCTCACTCTGCTTTCAGATCTAAATCCAATACAAC
ACTGTTTGTTCACAAACAAACAGTTCATAGTGGTGCATGTAGATATCATCACAGATTTAT
TGATCCATTAACTACCACACTATCAATTTCACACAAACACTAAATCCTATCATCACATCA
CCTCTCCCTCAGACACTATCAATATCTATATCATTAGAAAATCAAAACCCA

consensusID : consensus_7922#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [AATTAGAAGATTTAATGGTTGATGTTGAACGTGCCAATGGATTAGCTAGTCAATTAGAACGTGGAGATGTTCGTTCTGAAGAAGTTGAAGAATTAAAACGTAAAATGAATGCTAAAATACAAGAATTAGAATCAGAAGCCGAATCAGCTGAATCAAAATGTGGACAATTAGAAAAAACTAAAGCACGTTTACAAGGTGAATTAGAAGATTTAATGGTTGATGTTGAACGTGCCAATGGATTAGCTAGTCAATTAGAACGTAAACAAAATAATTTCAATCGTACATTAGCTGAATGGCAAAAGAAATATGCTGATTCTCAGGCTGAATTA]

[+] EMBL CD134645             [AATTAGAAGATTTAATGGTTGATGTTGAACGTGCCAATGGATTAGCTAGTCAATTAGAACGTGGAGATGTTCGTTCTGAAGAAGTTGAAGAATTAAAACGTAAAATGAATGCTAAAATACAAGAATTAGAATCAGAAGCCGAATCAGCTGAATCAAAATGTGGACAATTAGAAAAAACTAAAGCACGTTTACAAGGTGAATTAGAAGATTTAATGGTTGATGTTGAACGTGCCAATGGATTAGCTAGTCAATTAGAACGTAAACAAAATAATTTCAATCGTACATTAGCTGAATGGCAAAAGAAATATGCTGATTCTCAGGCTGAATTA]




>consensus_7922#1
AATTAGAAGATTTAATGGTTGATGTTGAACGTGCCAATGGATTAGCTAGTCAATTAGAAC
GTGGAGATGTTCGTTCTGAAGAAGTTGAAGAATTAAAACGTAAAATGAATGCTAAAATAC
AAGAATTAGAATCAGAAGCCGAATCAGCTGAATCAAAATGTGGACAATTAGAAAAAACTA
AAGCACGTTTACAAGGTGAATTAGAAGATTTAATGGTTGATGTTGAACGTGCCAATGGAT
TAGCTAGTCAATTAGAACGTAAACAAAATAATTTCAATCGTACATTAGCTGAATGGCAAA
AGAAATATGCTGATTCTCAGGCTGAATTA

consensusID : consensus_7922#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 105
fasta sequence

                              [TACCAAAATCTAATCTTCCGAATCATAGTCCCTCTCTTTTTTATCCTTCCAAATTTATTTCACTGGATTATACTCCCTGAATAACATCTTCAAACCCTAAACCTC]

[+] EMBL CD064363             [TACCAAAATCTAATCTTCCGAATCATAGTCCCTCTCTTTTTTATCCTTCCAAATTTATTTCACTGGATTATACTCCCTGAATAACATCTTCAAACCCTAAACCTC]




>consensus_7922#2
TACCAAAATCTAATCTTCCGAATCATAGTCCCTCTCTTTTTTATCCTTCCAAATTTATTT
CACTGGATTATACTCCCTGAATAACATCTTCAAACCCTAAACCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7922#0      AAAAACACGCAAGCATATTTTTGTGCATTACAATCTATAAATGCCTCAGTATTAATTTAC 60
consensus_7922#2      ------------------------------------------------------------
consensus_7922#1      ------------------------------------------------------------
                                                                                  

consensus_7922#0      AAAATAACACTAATGAATTAAAATGCACACGTGTCAAAAACTGCTGAGCTTTTATTTGAG 120
consensus_7922#2      ------------------------------------------------------------
consensus_7922#1      ------------------------------------------------------------
                                                                                  

consensus_7922#0      GTCAGATAGACAAAATAATGTAAAAAATTGTTATAACCGATGAAAACATTGAAACGCAAA 180
consensus_7922#2      ------------------------------------------------------------
consensus_7922#1      ------------------------------------------------------------
                                                                                  

consensus_7922#0      TGTTGGACACTAGAAACAGATCTCACAAATATGATCTAATGGAAGATATAGCACGGAAGT 240
consensus_7922#2      ------------------------------------------------------------
consensus_7922#1      ------------------------------------------------------------
                                                                                  

consensus_7922#0      GAATGTCAAAACGAAGACAAAGAAAGAAAATAATTCNCTATTTACTACCATGAAAAATAA 300
consensus_7922#2      ------------------------------------------------------------
consensus_7922#1      ------------------------------------------------------------
                                                                                  

consensus_7922#0      TAATTCAAGCTAAAAACAATCAAAACACTCAAAATACCCACCAAGCAAATATCTCATATC 360
consensus_7922#2      ------------------------------------------------------------
consensus_7922#1      ------------------------------AATTAGAAGATTTAATGGTTGATGTTGAAC 30
                                                                                  

consensus_7922#0      ATCTTCCTACAACATCATCAACTCCAAAAGACTCATTAACACCACCTAAAAACATAAAAC 420
consensus_7922#2      ------------------------------------------------------------
consensus_7922#1      GTGCCAATGGATTAGCTAGTCAATTAGAACGTGGAGATGTTCGTTCTGAAGAAGTTGAAG 90
                                                                                  

consensus_7922#0      AAACAAACATTCAATTTACT--CATTTCACAAATATTAACAAGACAAATCGCTAATATCA 478
consensus_7922#2      ------------------------------------------------------------
consensus_7922#1      AATTAAAACGTAAAATGAATGCTAAAATACAAGAATTAGAATCAGAAGCCGAATCAGCTG 150
                                                                                  

consensus_7922#0      TTAACAGTAAAGTAACATCGCTCCATCTCTCACTCTGCTTTCAGATCTAAATCCAATACA 538
consensus_7922#2      ------------------------------------------------------------
consensus_7922#1      AATCAAAATGTGGACAATTAGAAAAAACTAAAGCACGTTTACAAGGTGAATTAGAAGATT 210
                                                                                  

consensus_7922#0      ACACTGTTTGTTCACAAACAAACAGTTCATAGTGGTGCATGTAGATATCATCACAGATTT 598
consensus_7922#2      ----TACCAAAATCTAATCTTCCGAATCATAGTCCCTCTCTTTTTTATCCTTCCAAATTT 56
consensus_7922#1      TAATGGTTGATGTTGAACGTGCCAATGGATTAGCTAGTCAATTAGAACGTAAACAAAATA 270
                                     **     *     **           *    *      ** * * 

consensus_7922#0      ATTGATCCATTAACTACCACACTATCAATTTCACA--CAA-ACACTAAATCCTATCATCA 655
consensus_7922#2      ATT---TCACTGGATTATACTCCCTGAATAACATCTTCAA-ACCCTAAACCTC------- 105
consensus_7922#1      ATT---TCAATCG--TACATTAGCTGAATGGCAAAAGAAATATGCTGATTCTCAGGCTGA 325
                      ***    ** *       *     * ***  **     ** *  ** *  *         

consensus_7922#0      CATCACCTCTCCCTCAGACACTATCAATATCTATATCATTAGAAAATCAAAACCCA 711
consensus_7922#2      --------------------------------------------------------
consensus_7922#1      ATTA---------------------------------------------------- 329