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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 940 fasta sequence
[CCGAGCCAATAATTCGGCACGAGGCTTGTTTAGGCTTATAGGTTAACGNGCCTCCCAAAGTTCTTTCAGAACTCCTATTATGTTTAAAGTTCCTAATCGGTCCTGAATATTACCTACATTAATACGAAATAAATGCAAAAGCCCTTTGCTGTAACACATAGTGATCTTCAGGATATTCTGCAAGAATTTATTGATGAGTTAGTAGACTCATGTTTGATGGATGGAATTTTAACAATGCATCGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCGGATAATCTTGGCAATGGTTCTTCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCCAGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGAGAAACAGTTCAAGAAGAGCCAACAAACGCATAGCAGAACAACAACGTTTAGAAGATGATGATACCGAAACTGAGGAGAATTTCTTGGAGTCATCTTCGGGTGACATGATTTCGTACAAGAACTCAGCAACTTCATCTGACCAATTGGAATGCAAATATTCTAACGGAACAGTTAATCATCATCGATCACCCTTAAAACTGACAATCTCTTTGGTACCAGGTTCTGGGAAGCTAGATCACTCTTCCAAACATTCAAACAGACAACTTGACCCAACGGCTGGTGGTAATGAATATAGCTGTCTGGATGAAAACAATTCATTAAAAACTACCCAGAGTTCACATCTTAAATCAAACTTACCGACTGTAGTGAGTGAATCCAGCACTTGATAGGAAGTGAGAACGACTCTCTGTCTATTAGATGAAATTTATGTGAAGCACCAAGATCATTACGTTTTGACTGCATTTTACAATATTAAGCTTGTAAATAAAAAGTATT]
[+] EMBL CD082996 [CCGAGCCAATAATTCGGCACGAGGCTTGTTTAGGCTTATAGGTTAACGNGCCTCCCAAAGTTCTTTCAGAACTCCTATTATGTTTAAAGTTCCTAATCGGTCCTGAATATTACCTACATTAATACGAAATAAATGCAAAAGCCCTTTGCTGTAACACATAGTGATCTTCAGGATATTCTGCAAGAATTTATTGATGAGTTAGTAGACTCATGTTTGATGGATGGAATTTTAACAATGCATCGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCGGATAATCTTGGCAATGGTTCTTCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCCAGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGAGAAACAGTTCAAGAAGAGCCAACAAACGCATAGCAGAACAACAACGTTTAGAAGATGATGATACCGAAACTGAGGAGAATTTCTTGGAGTCATCTTCGGGTGACATGATTTCGTACAAGAACTCAGNCACTTCATCTGACCAATTGGAATGCANATATTCTAACGGAACAGTNTATCATCATCGATC ]
[+] EMBL CD084047 [ agggAAGCGG CCTGAATATTACCTACATTAATACGAAATAAATGCAAAAGCCCTTTGCTGTAACACATAGTGATCTTCAGGATATTCTGCAAGAATTTATTGATGAGTTAGTAGACTCATGTTTGATGGATGGAATTTTAACAATGCATCGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCGGATAATCTTGGCAATGGTTCTTCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCCAGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGAGAAACAGTTCAAGAAGAGCCAACAAACGCATAGCAGAACAACAACGTTTAGAAGATGATGATACCGAAACTGAGGAGAATTTCTTGGAG ]
[-] EMBL CD116838 [ GATGGAATTTTAACAATGCATCGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCGGATAATCTTGGCAATGGTTCTCCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCCAGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGAGAAACAGTTCAAGAAGAGCCAACAAACGCATAGCAGAACAACAACGTTTAGAAGATGATGATACCGAAACTGAGGAGAATTTCTTGGAGTCATCTTCGGGTGACATGATTTCGTACAAGAACTCAGCAACTTCATCTGACCAATTGGAATGCAAATATTCTAACGGAACAGTTAATCATCATCGATCACCCTTAAAACTGACAATCTCTTTGGTACCAGGTTCTGGGAAGCTTGATCACTCTTCCAAACATTCAAACA ]
[-] EMBL CD076579 [ TCAGGCTCTGGCAGAGACCCTAGCAAAACTGCCAGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGAGAAACAGTTCAAGAAGAGCCAACAAACGCATAGCAGAACAACAACGTTTAGAAGATGATGATACCGAAACTGAGGAGAATTTCTTGGAGTCATCTTCGGGTGACATGATTTCGTACAAGAACTCAGCAACTTCATCTGACCAATTGGAATGCAAATATTCTAACGGAACAGTTAATCATCATCGATCACCCTTAAAACTGACAATCTCTTTGGTACCAGGTTCTGGGAAGCTAGATCACTCTTCCAAACATTCAAACAGACAACTTGACCCAACGGCTGGTGGTAATGAATATAGCTGTCTGGATGAAAACAATTCATTAAAAACTACCCAGAGTTCACATCTTAAATCAAACTTACCGACTGTAGTGAGTGAATCCAGCACTTGATAGGAAGTGAGAACGACTCTCTGTCTATTAGATGAAATTTATGTGAAGCACCAAGATCATTACGTTTTGACTGCATTTTACAATATTAAGCTTGTAAATAAAAAGTATT]
[-] EMBL CD145647 [ ACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGAGAAACAGTTCAAGAAGAGCCAACAAACGCATAGCAGAACAACAACGTTTAGAAGATGATGATACCGAAACTGAGGAGAATTTCTTGGAGTCATCTTCGGGTGACATGATTTCGTACAAGAACTCAGCAACTTCATATGACCAATTGGAATGCAAATATTCTAACGGAACAGTTAATCATCATCGATCACCCTTAAAACTGTCAATCTCTTTGGTACCAGGTTCTGGGAAGATAGATCACTCTTCCTAACATTCTAACAGACAAC ]
consensusID : consensus_7923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence
[TTTTTTATTTACCAAGTAGCGGTCCTGAATATTACCTACATTAATACGAAATAAATGCAAAAGCCCTTTGCTGTAACACATAGTGATCTTCAGGATATTCTGCAAGAATTTATTGATGAGTTAGTAGACTCATGTTTGATGTATGGAATTTTAACAATGCATCGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCGGATAATCTTGGCAATGGTTCTTCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCCAGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGA]
[+] EMBL CD190579 [TTTTTTATTTACCAAGTAGCGGTCCTGAATATTACCTACATTAATACGAAATAAATGCAAAAGCCCTTTGCTGTAACACATAGTGATCTTCAGGATATTCTGCAAGAATTTATTGATGAGTTAGTAGACTCATGTTTGATGTATGGAATTTTAACAATGCATCGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCGGATAATCTTGGCAATGGTTCTTCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCCAGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7923#0 CCGAGCCAATAATTCGGCACGAGGCTTGTTTAGGCTTATAGGTTAACGNGCCTCCCAAAG 60
consensus_7923#1 ------------------------------------------------------------
consensus_7923#0 TTCTTTCAGAACTCCTATTATGTTTAAAGTTCCTAATCGGTCCTGAATATTACCTACATT 120
consensus_7923#1 -------------TTTTTTATTTACCAAGT-----AGCGGTCCTGAATATTACCTACATT 42
* **** * **** * ***********************
consensus_7923#0 AATACGAAATAAATGCAAAAGCCCTTTGCTGTAACACATAGTGATCTTCAGGATATTCTG 180
consensus_7923#1 AATACGAAATAAATGCAAAAGCCCTTTGCTGTAACACATAGTGATCTTCAGGATATTCTG 102
************************************************************
consensus_7923#0 CAAGAATTTATTGATGAGTTAGTAGACTCATGTTTGATGGATGGAATTTTAACAATGCAT 240
consensus_7923#1 CAAGAATTTATTGATGAGTTAGTAGACTCATGTTTGATGTATGGAATTTTAACAATGCAT 162
*************************************** ********************
consensus_7923#0 CGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCG 300
consensus_7923#1 CGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCG 222
************************************************************
consensus_7923#0 GATAATCTTGGCAATGGTTCTTCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCC 360
consensus_7923#1 GATAATCTTGGCAATGGTTCTTCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCC 282
************************************************************
consensus_7923#0 AGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCAT 420
consensus_7923#1 AGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCAT 342
************************************************************
consensus_7923#0 TTATCTAATTGTATGGGATTAGGGAGAAACAGTTCAAGAAGAGCCAACAAACGCATAGCA 480
consensus_7923#1 TTATCTAATTGTATGGGATTAGGGA----------------------------------- 367
*************************
consensus_7923#0 GAACAACAACGTTTAGAAGATGATGATACCGAAACTGAGGAGAATTTCTTGGAGTCATCT 540
consensus_7923#1 ------------------------------------------------------------
consensus_7923#0 TCGGGTGACATGATTTCGTACAAGAACTCAGCAACTTCATCTGACCAATTGGAATGCAAA 600
consensus_7923#1 ------------------------------------------------------------
consensus_7923#0 TATTCTAACGGAACAGTTAATCATCATCGATCACCCTTAAAACTGACAATCTCTTTGGTA 660
consensus_7923#1 ------------------------------------------------------------
consensus_7923#0 CCAGGTTCTGGGAAGCTAGATCACTCTTCCAAACATTCAAACAGACAACTTGACCCAACG 720
consensus_7923#1 ------------------------------------------------------------
consensus_7923#0 GCTGGTGGTAATGAATATAGCTGTCTGGATGAAAACAATTCATTAAAAACTACCCAGAGT 780
consensus_7923#1 ------------------------------------------------------------
consensus_7923#0 TCACATCTTAAATCAAACTTACCGACTGTAGTGAGTGAATCCAGCACTTGATAGGAAGTG 840
consensus_7923#1 ------------------------------------------------------------
consensus_7923#0 AGAACGACTCTCTGTCTATTAGATGAAATTTATGTGAAGCACCAAGATCATTACGTTTTG 900
consensus_7923#1 ------------------------------------------------------------
consensus_7923#0 ACTGCATTTTACAATATTAAGCTTGTAAATAAAAAGTATT 940
consensus_7923#1 ----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||