These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 940 fasta sequence [CCGAGCCAATAATTCGGCACGAGGCTTGTTTAGGCTTATAGGTTAACGNGCCTCCCAAAGTTCTTTCAGAACTCCTATTATGTTTAAAGTTCCTAATCGGTCCTGAATATTACCTACATTAATACGAAATAAATGCAAAAGCCCTTTGCTGTAACACATAGTGATCTTCAGGATATTCTGCAAGAATTTATTGATGAGTTAGTAGACTCATGTTTGATGGATGGAATTTTAACAATGCATCGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCGGATAATCTTGGCAATGGTTCTTCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCCAGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGAGAAACAGTTCAAGAAGAGCCAACAAACGCATAGCAGAACAACAACGTTTAGAAGATGATGATACCGAAACTGAGGAGAATTTCTTGGAGTCATCTTCGGGTGACATGATTTCGTACAAGAACTCAGCAACTTCATCTGACCAATTGGAATGCAAATATTCTAACGGAACAGTTAATCATCATCGATCACCCTTAAAACTGACAATCTCTTTGGTACCAGGTTCTGGGAAGCTAGATCACTCTTCCAAACATTCAAACAGACAACTTGACCCAACGGCTGGTGGTAATGAATATAGCTGTCTGGATGAAAACAATTCATTAAAAACTACCCAGAGTTCACATCTTAAATCAAACTTACCGACTGTAGTGAGTGAATCCAGCACTTGATAGGAAGTGAGAACGACTCTCTGTCTATTAGATGAAATTTATGTGAAGCACCAAGATCATTACGTTTTGACTGCATTTTACAATATTAAGCTTGTAAATAAAAAGTATT] [+] EMBL CD082996 [CCGAGCCAATAATTCGGCACGAGGCTTGTTTAGGCTTATAGGTTAACGNGCCTCCCAAAGTTCTTTCAGAACTCCTATTATGTTTAAAGTTCCTAATCGGTCCTGAATATTACCTACATTAATACGAAATAAATGCAAAAGCCCTTTGCTGTAACACATAGTGATCTTCAGGATATTCTGCAAGAATTTATTGATGAGTTAGTAGACTCATGTTTGATGGATGGAATTTTAACAATGCATCGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCGGATAATCTTGGCAATGGTTCTTCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCCAGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGAGAAACAGTTCAAGAAGAGCCAACAAACGCATAGCAGAACAACAACGTTTAGAAGATGATGATACCGAAACTGAGGAGAATTTCTTGGAGTCATCTTCGGGTGACATGATTTCGTACAAGAACTCAGNCACTTCATCTGACCAATTGGAATGCANATATTCTAACGGAACAGTNTATCATCATCGATC ] [+] EMBL CD084047 [ agggAAGCGG CCTGAATATTACCTACATTAATACGAAATAAATGCAAAAGCCCTTTGCTGTAACACATAGTGATCTTCAGGATATTCTGCAAGAATTTATTGATGAGTTAGTAGACTCATGTTTGATGGATGGAATTTTAACAATGCATCGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCGGATAATCTTGGCAATGGTTCTTCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCCAGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGAGAAACAGTTCAAGAAGAGCCAACAAACGCATAGCAGAACAACAACGTTTAGAAGATGATGATACCGAAACTGAGGAGAATTTCTTGGAG ] [-] EMBL CD116838 [ GATGGAATTTTAACAATGCATCGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCGGATAATCTTGGCAATGGTTCTCCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCCAGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGAGAAACAGTTCAAGAAGAGCCAACAAACGCATAGCAGAACAACAACGTTTAGAAGATGATGATACCGAAACTGAGGAGAATTTCTTGGAGTCATCTTCGGGTGACATGATTTCGTACAAGAACTCAGCAACTTCATCTGACCAATTGGAATGCAAATATTCTAACGGAACAGTTAATCATCATCGATCACCCTTAAAACTGACAATCTCTTTGGTACCAGGTTCTGGGAAGCTTGATCACTCTTCCAAACATTCAAACA ] [-] EMBL CD076579 [ TCAGGCTCTGGCAGAGACCCTAGCAAAACTGCCAGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGAGAAACAGTTCAAGAAGAGCCAACAAACGCATAGCAGAACAACAACGTTTAGAAGATGATGATACCGAAACTGAGGAGAATTTCTTGGAGTCATCTTCGGGTGACATGATTTCGTACAAGAACTCAGCAACTTCATCTGACCAATTGGAATGCAAATATTCTAACGGAACAGTTAATCATCATCGATCACCCTTAAAACTGACAATCTCTTTGGTACCAGGTTCTGGGAAGCTAGATCACTCTTCCAAACATTCAAACAGACAACTTGACCCAACGGCTGGTGGTAATGAATATAGCTGTCTGGATGAAAACAATTCATTAAAAACTACCCAGAGTTCACATCTTAAATCAAACTTACCGACTGTAGTGAGTGAATCCAGCACTTGATAGGAAGTGAGAACGACTCTCTGTCTATTAGATGAAATTTATGTGAAGCACCAAGATCATTACGTTTTGACTGCATTTTACAATATTAAGCTTGTAAATAAAAAGTATT] [-] EMBL CD145647 [ ACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGAGAAACAGTTCAAGAAGAGCCAACAAACGCATAGCAGAACAACAACGTTTAGAAGATGATGATACCGAAACTGAGGAGAATTTCTTGGAGTCATCTTCGGGTGACATGATTTCGTACAAGAACTCAGCAACTTCATATGACCAATTGGAATGCAAATATTCTAACGGAACAGTTAATCATCATCGATCACCCTTAAAACTGTCAATCTCTTTGGTACCAGGTTCTGGGAAGATAGATCACTCTTCCTAACATTCTAACAGACAAC ] consensusID : consensus_7923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [TTTTTTATTTACCAAGTAGCGGTCCTGAATATTACCTACATTAATACGAAATAAATGCAAAAGCCCTTTGCTGTAACACATAGTGATCTTCAGGATATTCTGCAAGAATTTATTGATGAGTTAGTAGACTCATGTTTGATGTATGGAATTTTAACAATGCATCGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCGGATAATCTTGGCAATGGTTCTTCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCCAGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGA] [+] EMBL CD190579 [TTTTTTATTTACCAAGTAGCGGTCCTGAATATTACCTACATTAATACGAAATAAATGCAAAAGCCCTTTGCTGTAACACATAGTGATCTTCAGGATATTCTGCAAGAATTTATTGATGAGTTAGTAGACTCATGTTTGATGTATGGAATTTTAACAATGCATCGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCGGATAATCTTGGCAATGGTTCTTCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCCAGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCATTTATCTAATTGTATGGGATTAGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7923#0 CCGAGCCAATAATTCGGCACGAGGCTTGTTTAGGCTTATAGGTTAACGNGCCTCCCAAAG 60 consensus_7923#1 ------------------------------------------------------------ consensus_7923#0 TTCTTTCAGAACTCCTATTATGTTTAAAGTTCCTAATCGGTCCTGAATATTACCTACATT 120 consensus_7923#1 -------------TTTTTTATTTACCAAGT-----AGCGGTCCTGAATATTACCTACATT 42 * **** * **** * *********************** consensus_7923#0 AATACGAAATAAATGCAAAAGCCCTTTGCTGTAACACATAGTGATCTTCAGGATATTCTG 180 consensus_7923#1 AATACGAAATAAATGCAAAAGCCCTTTGCTGTAACACATAGTGATCTTCAGGATATTCTG 102 ************************************************************ consensus_7923#0 CAAGAATTTATTGATGAGTTAGTAGACTCATGTTTGATGGATGGAATTTTAACAATGCAT 240 consensus_7923#1 CAAGAATTTATTGATGAGTTAGTAGACTCATGTTTGATGTATGGAATTTTAACAATGCAT 162 *************************************** ******************** consensus_7923#0 CGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCG 300 consensus_7923#1 CGTGCAATAAAGTTAGGATATTTCCATATAATTGCTCCTGAACAAAATCCAAACCTGTCG 222 ************************************************************ consensus_7923#0 GATAATCTTGGCAATGGTTCTTCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCC 360 consensus_7923#1 GATAATCTTGGCAATGGTTCTTCGAATTCAGGCTCTGGCAGAGACCCTAGCAAAACTGCC 282 ************************************************************ consensus_7923#0 AGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCAT 420 consensus_7923#1 AGTTGCTGTCGATGTGGAAAATGTAATTGTAAGGTTGCTGCTACACGCTATGCTGTTCAT 342 ************************************************************ consensus_7923#0 TTATCTAATTGTATGGGATTAGGGAGAAACAGTTCAAGAAGAGCCAACAAACGCATAGCA 480 consensus_7923#1 TTATCTAATTGTATGGGATTAGGGA----------------------------------- 367 ************************* consensus_7923#0 GAACAACAACGTTTAGAAGATGATGATACCGAAACTGAGGAGAATTTCTTGGAGTCATCT 540 consensus_7923#1 ------------------------------------------------------------ consensus_7923#0 TCGGGTGACATGATTTCGTACAAGAACTCAGCAACTTCATCTGACCAATTGGAATGCAAA 600 consensus_7923#1 ------------------------------------------------------------ consensus_7923#0 TATTCTAACGGAACAGTTAATCATCATCGATCACCCTTAAAACTGACAATCTCTTTGGTA 660 consensus_7923#1 ------------------------------------------------------------ consensus_7923#0 CCAGGTTCTGGGAAGCTAGATCACTCTTCCAAACATTCAAACAGACAACTTGACCCAACG 720 consensus_7923#1 ------------------------------------------------------------ consensus_7923#0 GCTGGTGGTAATGAATATAGCTGTCTGGATGAAAACAATTCATTAAAAACTACCCAGAGT 780 consensus_7923#1 ------------------------------------------------------------ consensus_7923#0 TCACATCTTAAATCAAACTTACCGACTGTAGTGAGTGAATCCAGCACTTGATAGGAAGTG 840 consensus_7923#1 ------------------------------------------------------------ consensus_7923#0 AGAACGACTCTCTGTCTATTAGATGAAATTTATGTGAAGCACCAAGATCATTACGTTTTG 900 consensus_7923#1 ------------------------------------------------------------ consensus_7923#0 ACTGCATTTTACAATATTAAGCTTGTAAATAAAAAGTATT 940 consensus_7923#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||