cluster # 7926

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Schistosoma mansoni
cluster # 7926 cluster # 7926 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7926#0 length = 882 sequences # 3

consensus_7926#1 length = 562 sequences # 2
consensus_7926#2 length = 356 sequences # 1

consensusID : consensus_7926#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 882
fasta sequence

                              [ACAAGATTCGACTTTCAGGCCATGCTGTTGGGAATGGATTGACAAATTACCGATTCAATGATAATTCTCTTTTGTATTTTATCAATTATCATGGTTTGATTGATGAAATTTCATGGAATGATCTA-ATTAATAAATGTTGCA-AAGATAAATGTTCAACCGT-TTGTATGTTCACTGATAGTGAATCACTGGAATGTCAACGGAT-TGTTAGTCA-ACTATATGAAACTGCTATGAAGGGATTAAATGAATATAATTTATATTCTGAATGTGCTGGTGGTGTTCAAATGTCATCTTTCAATTCTAATCATTCATTAATGTCTATCACTGAATTGTCTTCCATTTTGGCATCGTCTAAGCAATTTATTCATCATGATTTCGGTAATCTGTTTCGTGATAATATCTATATGAAATATCGCCGTTATGCTAATTCTTTACTACGTCATAATCGGACTAGTCGTTTAACTATGCCATGTGAAGACAGTACATTGATTTATAGTTATTTAAATTCACCAATAGTACGTCGATTTATCAATGTGAGACTTGATTTACCGAAAGAATGGGATGTTTGCAGTGAAACAGTTAACACCAATTATGTTCGAATTTATCGTGATCTTACAGAGCAGTATATGCAGTTACTGAAATCGAAGATTTTTGTTTTAATATGCAATGGTGACATTGATATGGCATGTAATTATTTTGGCGATGAATGGTTTGTGGATAATTTAAATCTGACGACCATATCTCCGCGTTCACCTTGGTTATATGTTGAGAAAGATGGTACCAAACAGATCGGCGGATATTGGAAATTGTTATCAGCCAATGTATCGAGTTTGGTGTATACGACTGTTCGAGGTGCAGGACATATGGTGCCACGAGATAAACCTG]

[+] EMBL CD083585             [ACAAGATTCGACTTTCAGGCCATGCTGTTGGGAATGGATTGACAAATTACCGATTCAATGATAATTCTCTTTTGTATTTTATCAATTATCATGGTTTGATTGATGAAATTTCATGGAATGATCTA ATTAATAAATGTTGCA AAGATAAATGTTCAACCGT TTGTATGTTCACTGATAGTGAATCACTGGAATGTCAACGGAT TGTTAGTCA ACTATATGAAACTGCTATGAAGGGATTAAATGAATATAATTTATATTCTGAATGTGCTGGTGGTGTTCAAATGTCATCTTTCAATTCTAATCATTCATTAATGTCTATCACTGAATTGTCTTCCATTTTGGCATCGTCTAAGCAATTTATTCATCATGATTTCGGTAATCTGTTTCGTGATAATATCTATATGAAATATCGCCGTTATGCTAATTCTTTACTACGTCATAATCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD163312             [                                                                                                                         TCTACATTAATAAATGTTGCATAAGATAAATG TCAACCGTGATGTATGTTCACTGATAGTGAATCACTGGAATGTCAACGGATCTGTTAGTCACACTATATGAAACTGCTATGAAGGGATTAGATGAATATAATTTATATTCTGAATGTGCTGGTGGTGTTCAAATGTCATCTTTCAATTCTAATCATTCATTAATGTCTATCACTGAATTGTCTTCCATTTTGGCATCGTCTAAGCAATTTATTCATCATGATTTCGGTAATCTGTTTCGTGATAATATCTATATGAAATATCGCCGTTATGCTAATTCTTTACTACGTCATAATCGGACTAGTCGTTTAACTATGCCATGTGAAGACAGTACATTGATTTATAGTTATTTAAATTCACCAATAGTACGTCGATTTATCAATGTGAGACTTGATTTACCGAAAGAATGGGATGTTTGCAGTGAAACAGTT                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD126896             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATTGATTTATAGTTATTTAAATTCACCAATAGTACGTCGATTTATCAATGTGAGACTTGATTTACCGAAAGAATGGGATGTTTGCAGTGAAACAGTTAACACCAATTATGTTCGAATTTATCGTGATCTTACAGAGCAGTATATGCAGTTACTGAAATCGAAGATTTTTGTTTTAATATGCAATGGTGACATTGATATGGCATGTAATTATTTTGGCGATGAATGGTTTGTGGATAATTTAAATCTGACGACCATATCTCCGCGTTCACCTTGGTTATATGTTGAGAAAGATGGTACCAAACAGATCGGCGGATATTGGAAATTGTTATCAGCCAATGTATCGAGTTTGGTGTATACGACTGTTCGAGGTGCAGGACATATGGTGCCACGAGATAAACCTG]




>consensus_7926#0
ACAAGATTCGACTTTCAGGCCATGCTGTTGGGAATGGATTGACAAATTACCGATTCAATG
ATAATTCTCTTTTGTATTTTATCAATTATCATGGTTTGATTGATGAAATTTCATGGAATG
ATCTAATTAATAAATGTTGCAAAGATAAATGTTCAACCGTTTGTATGTTCACTGATAGTG
AATCACTGGAATGTCAACGGATTGTTAGTCAACTATATGAAACTGCTATGAAGGGATTAA
ATGAATATAATTTATATTCTGAATGTGCTGGTGGTGTTCAAATGTCATCTTTCAATTCTA
ATCATTCATTAATGTCTATCACTGAATTGTCTTCCATTTTGGCATCGTCTAAGCAATTTA
TTCATCATGATTTCGGTAATCTGTTTCGTGATAATATCTATATGAAATATCGCCGTTATG
CTAATTCTTTACTACGTCATAATCGGACTAGTCGTTTAACTATGCCATGTGAAGACAGTA
CATTGATTTATAGTTATTTAAATTCACCAATAGTACGTCGATTTATCAATGTGAGACTTG
ATTTACCGAAAGAATGGGATGTTTGCAGTGAAACAGTTAACACCAATTATGTTCGAATTT
ATCGTGATCTTACAGAGCAGTATATGCAGTTACTGAAATCGAAGATTTTTGTTTTAATAT
GCAATGGTGACATTGATATGGCATGTAATTATTTTGGCGATGAATGGTTTGTGGATAATT
TAAATCTGACGACCATATCTCCGCGTTCACCTTGGTTATATGTTGAGAAAGATGGTACCA
AACAGATCGGCGGATATTGGAAATTGTTATCAGCCAATGTATCGAGTTTGGTGTATACGA
CTGTTCGAGGTGCAGGACATATGGTGCCACGAGATAAACCTG

consensusID : consensus_7926#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 562
fasta sequence

                              [AGGAGACATCGAAGATTTTTGTTTTAATATACAATGGTTTCATTCATCGCCAAAATACTTACATGCCATATCAATGTCACCATTGTATGGCATGTAATTATTTTGGCGATGAATGGTTTGTGGATAATTTAAATCTGACGACCATATCTCCGCGTTCACCTTGGTTATATGTTGAGAAAGATGGTACCAAACAGATCGGCGGATATTGGAAATTGTTATCAGCCAATGTATCGAGTTTGGTGTATACGACTGTTCGAGGTGCAGGACATATGGTGCCACGAGATAAACCTGCTGCAACATTTCACATGATTAGTAGGCTCATTCACTTCGAACCTTTTTAATATGTAGTGGATTCTCATAGGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCTGATTTTTTTGTCATAAGGCACTACTGTTTTTGCTCCTTACCATTGTAGTATTTGTAGTTCTGGAAAAATTGAAAATTATCGTGCTTTGTATTTTAATGCCCAAATCTTAAAATATTGTGCCACTTTGATTTTATTTGTCTGTTTTATATAATCGAT]

[+] EMBL CD082095             [AGGAGACATCGAAGATTTTTGTTTTAATATACAATGGTTTCATTCATCGCCAAAATACTTACATGCCATATCAATGTCACCATTGTATGGCATGTAATTATTTTGGCGATGAATGGTTTGTGGATAATTTAAATCTGACGACCATATCTCCGCGTTCACCTTGGTTATATGTTGAGAAAGATGGTACCAAACAGATCGGCGGATATTGGAAATTGTTATCAGCCAATGTATCGAGTTTGGTGTATACGACTGTTCGAGGTGCAGGACATATGGTGCCACGAGATAAACCTGCTGCAACATTTCACATGATTAGTAGGCTCATTCACTTCGAACCTTTTTAATATGTAGTGGATTCTCATAGGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCTGATTTTTTTGTCATAAGGCACTACTGTTTTTGCTCCTTACCATTGTAGTATTTGTAGTTCTGGAAAAATTGAAAATTATCGTGCTTTGTATTTTAATGCCCAAATCTTAAAATATTGTGCCACTTTGATTTTATTTGTCTGTTTTATATAATCGA ]
[-] EMBL CD075710             [    GAAATCGAAGATTTTTGTTTTAATATACAATGGTGACATTCATCGCCAAAATAATTACATGCCATATCAATGTCACCATTGTATGGCATGTAATTATTTTGGCGATGAATGGTTTGTGGATAATTTAAATCTGACGACCATATCTCCGCGTTCACCTTGGTTATATGTTGAGAAAGATGGTACCAAACAGATCGGCGGATATTGGAAATTGTTATCAGCCAATGTATCGAGTTTGGTGTATACGACTGTTCGAGGTGCAGGACATATGGTGCCACGAGATAAACCTGCTGCAACATTTCACATGATTAGTAGGCTCATTCACTTCGAACCTTTTTAATATGTAGTGGATTCTCATAGGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCTGATTTTTTTGTCATAAGGCACTACTGTTTTTGCTCCTTACCATTGTAGTATTTGTAGTTCTGGAAAAATTGAAAATTATCGTGCTTTGTATTTTAATGCCCAAATCTTAAAATATTGTGCCACTTTGATTTTATTTGTCTGTTTTATATAATCGAT]




>consensus_7926#1
AGGAGACATCGAAGATTTTTGTTTTAATATACAATGGTTTCATTCATCGCCAAAATACTT
ACATGCCATATCAATGTCACCATTGTATGGCATGTAATTATTTTGGCGATGAATGGTTTG
TGGATAATTTAAATCTGACGACCATATCTCCGCGTTCACCTTGGTTATATGTTGAGAAAG
ATGGTACCAAACAGATCGGCGGATATTGGAAATTGTTATCAGCCAATGTATCGAGTTTGG
TGTATACGACTGTTCGAGGTGCAGGACATATGGTGCCACGAGATAAACCTGCTGCAACAT
TTCACATGATTAGTAGGCTCATTCACTTCGAACCTTTTTAATATGTAGTGGATTCTCATA
GGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCTGATTTTTTTGTCAT
AAGGCACTACTGTTTTTGCTCCTTACCATTGTAGTATTTGTAGTTCTGGAAAAATTGAAA
ATTATCGTGCTTTGTATTTTAATGCCCAAATCTTAAAATATTGTGCCACTTTGATTTTAT
TTGTCTGTTTTATATAATCGAT

consensusID : consensus_7926#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence

                              [TCAGTGATTGGAGACATTTGTGCTACGTGATTGAGAATCATTCATATTGTCGCAGATGGAACTACTCTTTATCTCCCTCTCTATTTTGTGTTGCAGTATTCCTTCTTACATACATTTTCATTGTCCTTTCGAATAATATTCTCAATGTTTAGTTTCTGATTATCATTACTGCTACATTATTTTAGTCCATTGCGATTCAAATTTTTATATTCATCTCTCCCTGCTAGTGTTATATTACCTGCTGCAACATTTCACATGATTAGTAGGCTCATTCACTTCGAACCTTTTTAATATGTAGTGGATTCTCATAGGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCT]

[+] EMBL CD166946             [TCAGTGATTGGAGACATTTGTGCTACGTGATTGAGAATCATTCATATTGTCGCAGATGGAACTACTCTTTATCTCCCTCTCTATTTTGTGTTGCAGTATTCCTTCTTACATACATTTTCATTGTCCTTTCGAATAATATTCTCAATGTTTAGTTTCTGATTATCATTACTGCTACATTATTTTAGTCCATTGCGATTCAAATTTTTATATTCATCTCTCCCTGCTAGTGTTATATTACCTGCTGCAACATTTCACATGATTAGTAGGCTCATTCACTTCGAACCTTTTTAATATGTAGTGGATTCTCATAGGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCT]




>consensus_7926#2
TCAGTGATTGGAGACATTTGTGCTACGTGATTGAGAATCATTCATATTGTCGCAGATGGA
ACTACTCTTTATCTCCCTCTCTATTTTGTGTTGCAGTATTCCTTCTTACATACATTTTCA
TTGTCCTTTCGAATAATATTCTCAATGTTTAGTTTCTGATTATCATTACTGCTACATTAT
TTTAGTCCATTGCGATTCAAATTTTTATATTCATCTCTCCCTGCTAGTGTTATATTACCT
GCTGCAACATTTCACATGATTAGTAGGCTCATTCACTTCGAACCTTTTTAATATGTAGTG
GATTCTCATAGGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7926#0      ACAAGATTCGACTTTCAGGCCATGCTGTTGGGAATGGATTGACAAATTACCGATTCAATG 60
consensus_7926#1      ------------------------------------------------------------
consensus_7926#2      ------------------------------------------------------------
                                                                                  

consensus_7926#0      ATAATTCTCTTTTGTATTTTATCAATTATCATGGTTTGATTGATGAAATTTCATGGAATG 120
consensus_7926#1      ------------------------------------------------------------
consensus_7926#2      ------------------------------------------------------------
                                                                                  

consensus_7926#0      ATCTAATTAATAAATGTTGCAAAGATAAATGTTCAACCGTTTGTATGTTCACTGATAGTG 180
consensus_7926#1      ------------------------------------------------------------
consensus_7926#2      ------------------------------------------------------------
                                                                                  

consensus_7926#0      AATCACTGGAATGTCAACGGATTGTTAGTCAACTATATGAAACTGCTATGAAGGGATTAA 240
consensus_7926#1      --------------------------AGGAGAC-ATCGAAGATTTTTGTTTTAATATACA 33
consensus_7926#2      ---------------------------------------------------------TCA 3
                                                                                 *

consensus_7926#0      ATGAATATAATTTATATTCTGAATGTGCTGGTGGTGTTCAAATGTCATCTTTCAATTCTA 300
consensus_7926#1      ATGG-TTTCATTCATCGCCAAAATACTTACATGCCATATCAATGTCACCATTGTATGGCA 92
consensus_7926#2      GTGATTGGAG---ACATTTGTGCTACGTGATTGAGAATCATTCATATTGTCGCAGATGGA 60
                       **  *       *         *       **           *              *

consensus_7926#0      ATCATTCATTAATGTCTATCACTGAATTGTCTTCCATTTTGGCATCGTCTAAGCAATTTA 360
consensus_7926#1      TGTAATTATTT-TGGCGATGAATGGTTTGTGGATAATTTAAATCTGAC---GACCATATC 148
consensus_7926#2      ACTACTCTTTA-TCTCCCTCTCTATTTTGTGTTGCAGTATTCCTTCTT---ACATACATT 116
                         * *  **  *  *  *   *   ****     * *      *          *  * 

consensus_7926#0      TTCATCATGATTTCGGTAATCTGTTTCGTGATAATATCTATATGAAATATCGCCGTTATG 420
consensus_7926#1      TCCGCGTTCACCTTGGTTATATGTTGAGAAAGATGGTACCAAACAGAT-CGGCGGATATT 207
consensus_7926#2      TTCATTGTCCTTTCGAATAATATTCTCAATGTTTAGTTTCTGATTATCATTACTGCTACA 176
                      * *    *    * *   *    *            *               * * **  

consensus_7926#0      CTAATTCTTTACTACGTCATA-ATCGGACTAGTCGTTTA--ACTATGCCATGTGAAGACA 477
consensus_7926#1      GGAAATTGTTATCAGCCAATGTATCGAGTTTGGTGTATACGACTGTTCGAGGTGCAGGAC 267
consensus_7926#2      TTA---TTTTAGTCCATTGCGATTCAAATTT-TTATATTCATCTCTCCC---TGCTAGTG 229
                        *     ***            **    *     * *    ** * *    **      

consensus_7926#0      GTACATTGATTTATAGTTATTTAAATTCACCAATAGTACGTCGATTTATCAATGTGAGAC 537
consensus_7926#1      ATATGGTGCCACG-----AGATAAACCTGCTG-CAACATTTCACATGATTAGT---AGGC 318
consensus_7926#2      TTATATT-----------------ACCTGCTG-CAACATTTCACATGATTAGT---AGGC 268
                       **   *                 *    *    *  *  **   * ** * *   ** *

consensus_7926#0      TTGATTTACCGAAAGAATGGGATGTTTGCAGTGAAACAGTTAACACCAATTATGTTCGAA 597
consensus_7926#1      TC-ATTCACT-------TCGAACCTTT------------TTAATATGTAGTGGATTC--- 355
consensus_7926#2      TC-ATTCACT-------TCGAACCTTT------------TTAATATGTAGTGGATTC--- 305
                      *  *** **        * * *  ***            **** *   * *   ***   

consensus_7926#0      TTTATCGTGATCTTACAGAGCAGTATATGCAGTTACTGAAATCGAAGATTTTTGTTTTAA 657
consensus_7926#1      -TCATAGGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCTGATTTTTT 414
consensus_7926#2      -TCATAGGAAACTTGAACAGCTGACTATCTCCCTACTTGTATTTTTGATTCT-------- 356
                       * ** *  * ***  * *** *  ***     ****   **    **** *        

consensus_7926#0      TATGCAATGGTGACATTGATATGGCATGTAATTATTTTGGCGATGAATGGTTTGTGGATA 717
consensus_7926#1      TGTCATAAGGCACTACTGTTTTTGCTCCTTACCATTGTAGT-ATTTGTAGTTCTGGAAAA 473
consensus_7926#2      ------------------------------------------------------------
                                                                                  

consensus_7926#0      ATTTAAATCTGACGACCATATCTCCGCGTTCACCTTGGTTATATGTTGAGAAAGATGGTA 777
consensus_7926#1      ATTGAAA----ATTATCGTG-CTTTGTATTT-TAATGCCCAAATCTTA--AAATATTGTG 525
consensus_7926#2      ------------------------------------------------------------
                                                                                  

consensus_7926#0      CCAAACAGATCGGCGGATATTGGAAATTGTTAT-CAGCCAATGTATCGAGTTTGGTGTAT 836
consensus_7926#1      CCACTTTGATTT-----TATTTGTCTGTTTTATATAATCGAT------------------ 562
consensus_7926#2      ------------------------------------------------------------
                                                                                  

consensus_7926#0      ACGACTGTTCGAGGTGCAGGACATATGGTGCCACGAGATAAACCTG 882
consensus_7926#1      ----------------------------------------------
consensus_7926#2      ----------------------------------------------