These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7930#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 914 fasta sequence [CCAGAGCGTTGCAAGATAAACAACTAATGAACTCATAATAATTACGTAACTTAAAACATTGATTTTTATTCGTCTGTTAAAATAAGTTAAAAAAGCAACACTTGCTAAAACAAAGTTTGATGATAAACAGTAAAATACAAAACAAGAAAATTAAACTTACCGAATAGAATCTTTATCAATAGCTGGTGATAAATGCTCAAAAACAACTTCTGTAATATCCGATGCATTGAAACGTGGTCTAATACGTCTACATATAAGTGCACGATCCAGAAATACTGTAAGTTGTGACATTTGACATTCAAACATATCATATACTTGTCGAGATCTATCCAAACCACCACCAACTAAAGTTCCGCTTTTGCTAGGACCACCACCAGCACTTCCACTGCTGTTATCACCAACACCTCCATTTGTTCCTCCATCAATAGGATTTTGACCAGTTTTAGGATAAATAGTAGAACCTTTCTGTTGACCCGCTACTGTTCCAGATCCAACTGGAGGACCACTAACATTTCCGCCTGAAGGAACTACCACAGAATTAGTCGATGTTATATTTCTAGCGAAGTGATGTGTGCCACCTGTAGTTATTGTATTTGTTTGATGATGTGATGAATATTGATCACTTAATACATCACCAG-TTTGTGGATTTAAAACT-AACATTTCTTGTTGTTTAATTAAACCAGCTTGATGATGCATAATGTATTGTTCAGGTCGTAGTAGTGGAAGGGAACCAATCACGCTGTTTCGTCAATTAAAAAAAAATAAATAAAAGTTATCTGCTAAATAATGGTACACAAAAATTTTAATGGCTTTTTATGAGTAAGAAACGTGTGTATTCTTGAAATTCCAATGTAAATTAAAGAAAGAATTCAAATGATTCGTAGAAATAGTCATTCATAAAACATCTTGATCTA] [+] EMBL CD185408 [CCAGAGCGTTGCAAGATAAACAACTAATGAACTCATAATAATTACGTAACTTAAAACATTGATTTTTATTCGTCTGTTAAAATAAGTTAAAAAAGCAACACTTGCTAAAACAAAGTTTGATGATAAACAGTAAAATACAAAACAAGAAAATTAAACTTACCGAATAGAATCTTTATCAATAGCTGGTGATAAATGCTCAAAAACAACTTCTGTAATATCCGATGCATTGAAACGTGGTCTAATACGTCTACATATAAGTGCACGATCCAGAAATACTGTAAGTTGTGACATTTGACATTCAAACATATCATATACTTGTCGAGATCTATCCAAACCACCACCAACTAAAGTTCCGCTTTTGCTAGGACCACCACCAGCACTTCCACTGCTGTTATCACCAACACCTCCATTTGTTCCTCCATCAATAGGATTTTGACCAGTTTTAGGATAAATAGTAGAACCTTTCTGTTGACCCGCTACCGTTCCAGATCCAACTGGAGGACCACTAACATTTCCGCCTGAAAGAACTACCACAGAA ] [-] EMBL CD187827 [ ACCAACACCTCCATTTGTTCCTCCATCAATAGGATTTTGACCAGTTTTAGGATAAATAGTAGAACCTTTCTGTTGACCCGCTACTGTTCCAGATCCAACTGGAGGACCACTAACATTTCCGCCTGAAGGAACTACCACAGAATTAGTCGATGTTATATTTCTAGCGAAGTGATGTGTGCCACCTGTAGTTATTGTATTTGTTTGATGATGTGATGAATATTGATCACTTAATACATCACCAG TTTGTGGATTTAAAACT AACATTTCTTGTTGTTTAATTAAACCAGCTTGATGATGCATAATGTATTGTTCAGGTCGTAGTAGTG ] [+] EMBL CD072193 [ ACACCTCCATTTGTTCCTCCATCAATAGGATTTTGACCAGTTTTAGGATAAATAGTAGAACCTTTCTGTTGACCCGCTACTGTTCCAGATCCAACTGGAGGACCACTAACATTTCCGCCTGAAGGAACTACCACAGAATTAGTCGATGTTATATTTCTAGCGAAGTGATGTGTGCCACCTGTAGTTATTGTATTTGTTTGATGATGTGATGAATATTGATCACTTAATACATCACCAGTTTTGTGGATTT AAACTAAACA TTCTTTGTGTTaan ] [-] EMBL CD098014 [ GGACCACTAACATTTCCGCCTGAAGGAACTACCACAGAATTAGTCGATGTTATATTTCTAGCGAAGTGATGTGTGCCACCTGTAGTTATTGTATTTGTTTGATGATGTGATGAATATTGATCACTTAATACATCACCAG TTTGTGGATTTAAAACT AACATTTCTTGTTGTTTAATTAAACCAGCTTGATGATGCATAATGTATTGTTCAGGTCGTAGTGGTTGAAGGGAACCAATCACGCTGTTTCGTCAATTAAAAAAAAATAAATAAAAGTTATCTGCTAAATAATGGTACACAAAAATTTTAATGGCTTTTTATGAGTAAGAAACGTGTGTATTCTTGAAATTCCAATGTAAATTAAAGAAAGAATTCAAATGATTCGTAGAAATAGTCATTCATAAAACATCTTGATCTA] consensusID : consensus_7930#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence [GTGCCACCTGTAGTTATTGTATTTGTTGAATGATGTGATGAATATTGATCACTTAATACATCACCAGTTTGTGGATTTAAAACTAACATTTCTTGTTGTTTAATTAAACCAGCTTGATGATGCATAATGTATTGTTCAGGTCGTAGTGGTTGAAGGGAACCAATCACGTTCTTTTTCTCTAAATCTTCTTTGATTTGATTAAAAGATAATTTTTGTTGATTTTCAACATTTTGAATATTTAAACATTCCATATTTTGTTCAGGGATCAGTTCATTTTTGCCATGTTCATTTTTCAAAATTTCTTGATCCAATTCTT] [-] EMBL CD184622 [GTGCCACCTGTAGTTATTGTATTTGTTGAATGATGTGATGAATATTGATCACTTAATACATCACCAGTTTGTGGATTTAAAACTAACATTTCTTGTTGTTTAATTAAACCAGCTTGATGATGCATAATGTATTGTTCAGGTCGTAGTGGTTGAAGGGAACCAATCACGTTCTTTTTCTCTAAATCTTCTTTGATTTGATTAAAAGATAATTTTTGTTGATTTTCAACATTTTGAATATTTAAACATTCCATATTTTGTTCAGGGATCAGTTCATTTTTGCCATGTTCATTTTTCAAAATTTCTTGATCCAATTCTT] consensusID : consensus_7930#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 136 fasta sequence [TACCGCATAATTAGTCGATGTTATATTTCTAGCGAGCCGATGTGTGCCACCTGTCGTTATTGTATGTGCTTGATGATGTGATTAATATTGATCACTTAATACATCACCACTTTGTGGATTTAAAACATAACATCTT] [+] EMBL CD199896 [TACCGCATAATTAGTCGATGTTATATTTCTAGCGAGCCGATGTGTGCCACCTGTCGTTATTGTATGTGCTTGATGATGTGATTAATATTGATCACTTAATACATCACCACTTTGTGGATTTAAAACATAACATCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7930#0 CCAGAGCGTTGCAAGATAAACAACTAATGAACTCATAATAATTACGTAACTTAAAACATT 60 consensus_7930#2 ------------------------------------------------------------ consensus_7930#1 ------------------------------------------------------------ consensus_7930#0 GATTTTTATTCGTCTGTTAAAATAAGTTAAAAAAGCAACACTTGCTAAAACAAAGTTTGA 120 consensus_7930#2 ------------------------------------------------------------ consensus_7930#1 ------------------------------------------------------------ consensus_7930#0 TGATAAACAGTAAAATACAAAACAAGAAAATTAAACTTACCGAATAGAATCTTTATCAAT 180 consensus_7930#2 ------------------------------------------------------------ consensus_7930#1 ------------------------------------------------------------ consensus_7930#0 AGCTGGTGATAAATGCTCAAAAACAACTTCTGTAATATCCGATGCATTGAAACGTGGTCT 240 consensus_7930#2 ------------------------------------------------------------ consensus_7930#1 ------------------------------------------------------------ consensus_7930#0 AATACGTCTACATATAAGTGCACGATCCAGAAATACTGTAAGTTGTGACATTTGACATTC 300 consensus_7930#2 ------------------------------------------------------------ consensus_7930#1 ------------------------------------------------------------ consensus_7930#0 AAACATATCATATACTTGTCGAGATCTATCCAAACCACCACCAACTAAAGTTCCGCTTTT 360 consensus_7930#2 ------------------------------------------------------------ consensus_7930#1 ------------------------------------------------------------ consensus_7930#0 GCTAGGACCACCACCAGCACTTCCACTGCTGTTATCACCAACACCTCCATTTGTTCCTCC 420 consensus_7930#2 ------------------------------------------------------------ consensus_7930#1 ------------------------------------------------------------ consensus_7930#0 ATCAATAGGATTTTGACCAGTTTTAGGATAAATAGTAGAACCTTTCTGTTGACCCGCTAC 480 consensus_7930#2 ------------------------------------------------------------ consensus_7930#1 ------------------------------------------------------------ consensus_7930#0 TGTTCCAGATCCAACTGGAGGACCACTAACATTTCCGCCTGAAGGAACTACCACAGAATT 540 consensus_7930#2 ------------------------------------------------TACCGCATAATT 12 consensus_7930#1 ------------------------------------------------------------ consensus_7930#0 AGTCGATGTTATATTTCTAGCGAAGTGATGTGTGCCACCTGTAGTTATTGTATTTGTTTG 600 consensus_7930#2 AGTCGATGTTATATTTCTAGCGAGCCGATGTGTGCCACCTGTCGTTATTGTATGTGCTTG 72 consensus_7930#1 -------------------------------GTGCCACCTGTAGTTATTGTATTTGTTGA 29 *********** ********** ** * consensus_7930#0 ATGATGTGATGAATATTGATCACTTAATACATCACCAGTTTGTGGATTTAAAAC-TAACA 659 consensus_7930#2 ATGATGTGATTAATATTGATCACTTAATACATCACCACTTTGTGGATTTAAAACATAACA 132 consensus_7930#1 ATGATGTGATGAATATTGATCACTTAATACATCACCAGTTTGTGGATTTAAAAC-TAACA 88 ********** ************************** **************** ***** consensus_7930#0 TTTCTTGTTGTTTAATTAAACCAGCTTGATGATGCATAATGTATTGTTCAGGTCGTAGTA 719 consensus_7930#2 TCTT-------------------------------------------------------- 136 consensus_7930#1 TTTCTTGTTGTTTAATTAAACCAGCTTGATGATGCATAATGTATTGTTCAGGTCGTAGTG 148 * * consensus_7930#0 GTGGAAGGGAACCAATCACGCTGTTTCGTCAATTAAAAAAAAATAAATAAAAGTTATCTG 779 consensus_7930#2 ------------------------------------------------------------ consensus_7930#1 GTTGAAGGGAACCAATCACGTTCTTT--TTCTCTAAATCTTCTTTGAT--------TTGA 198 consensus_7930#0 CTAAATAATGGTACACAAAAATTTTAATGGCTTTTTATGAGTAAGAAACGTGTGTATTCT 839 consensus_7930#2 ------------------------------------------------------------ consensus_7930#1 TTAAAAGATAATTTTTGTTGATTTTCAACATTTTGAATATTTAAACATTCCATATTTTGT 258 consensus_7930#0 TGAAATTCCAATGTAAATTAAAGAAAG--AATTCAAATGATTCGTAGAAATAGTCATTCA 897 consensus_7930#2 ------------------------------------------------------------ consensus_7930#1 TCAGGGATCAGTTCATTTTTGCCATGTTCATTTTTCAAAATTTCTTGATCCAATTCTT-- 316 consensus_7930#0 TAAAACATCTTGATCTA 914 consensus_7930#2 ----------------- consensus_7930#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||