cluster # 7931

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Schistosoma mansoni
cluster # 7931 cluster # 7931 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7931#0 length = 652 sequences # 5

consensus_7931#1 length = 616 sequences # 1

consensusID : consensus_7931#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 652
fasta sequence

                              [ACTGCCGAAAATGTAGATTACTTGGGCCTAAGACATTATCGATTTTACATCCGATGTCCTTTATGCTGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAAAGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGTCAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTAGACCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAAAAGGAACCAGTAGAAATTGGGAAATCTTACCTAAAGCGACAACTTCAAGGTGTTTTACGGGTGCAAAGAGGCCAGTATCAGAAACTAAAATTCCAAAGCTTGATGGTGATTCTGAAGCATCAGCCAT]

[+] EMBL CD154411             [ACTGCCGAAAATGTAGATTACTTGGGCCTAAGACATTATCGATTTTACATCCGATGTCCTTTATGCTGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAAAGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGTCAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCA                                                                                                                                                                                                                                     ]
[+] EMBL CD096476             [                                                                  TGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAAAGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGTCAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTAGACCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAAAAGGAACCAGTAGAAATTGGGAAATCTTACCTAAAGCGACAACTTCAAGGTGTTTTACGGGTGCAAAGAGGCCAGTATCAGAAACTAAAATTCCAAAGCTTGATGGTGATTCTGAAGCATCAGCCAT]
[+] EMBL CD096437             [                                                                  TGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAAAGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGTCAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAGATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTAGACCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAAAAGGAACCAGTAGAAATTGGGAAATCTTACCTAAAGCGACAACTTCAAG                                                                              ]
[+] EMBL CD192559             [                                                                                                                                                                                                                            AATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTA                                                                                                                                                                              ]
[+] EMBL CD192560             [                                                                                                                                                                                                                            AATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTA                                                                                                                                                                              ]




>consensus_7931#0
ACTGCCGAAAATGTAGATTACTTGGGCCTAAGACATTATCGATTTTACATCCGATGTCCT
TTATGCTGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAA
AGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGT
CAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACT
GATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAAT
CAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAG
GAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCT
TCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTAGA
CCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAAAAGGAACCAGTAGAA
ATTGGGAAATCTTACCTAAAGCGACAACTTCAAGGTGTTTTACGGGTGCAAAGAGGCCAG
TATCAGAAACTAAAATTCCAAAGCTTGATGGTGATTCTGAAGCATCAGCCAT

consensusID : consensus_7931#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence

                              [TGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAAAGTGGCGACTATGTTCTAGAAAGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGTCAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTAGACCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAAAAGGAGCCAGTAGAAATTGGGAAATCTTACCTANAGCGACAACTTCAAGGTGTTTTACGGGTGCANAAGAGGCCAGTATCAGAAACTAAAATTCCAAAGCTTGATGGTGATTCTGAAGCATCAGCCATGAATAACA]

[+] EMBL CD096391             [TGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAAAGTGGCGACTATGTTCTAGAAAGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGTCAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTAGACCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAAAAGGAGCCAGTAGAAATTGGGAAATCTTACCTANAGCGACAACTTCAAGGTGTTTTACGGGTGCANAAGAGGCCAGTATCAGAAACTAAAATTCCAAAGCTTGATGGTGATTCTGAAGCATCAGCCATGAATAACA]




>consensus_7931#1
TGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAAAGTGGC
GACTATGTTCTAGAAAGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAA
CTAGAAGCTAAACGTCAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTA
TTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGAC
TTGAAACAGTTAAATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAA
ATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATA
AAGGAGTTACTCGCTTCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGT
GAAAATTCCTCTAGACCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAA
AAGGAGCCAGTAGAAATTGGGAAATCTTACCTANAGCGACAACTTCAAGGTGTTTTACGG
GTGCANAAGAGGCCAGTATCAGAAACTAAAATTCCAAAGCTTGATGGTGATTCTGAAGCA
TCAGCCATGAATAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7931#0      ACTGCCGAAAATGTAGATTACTTGGGCCTAAGACATTATCGATTTTACATCCGATGTCCT 60
consensus_7931#1      -------------------------------------------TGTGCTGAGATTATTTG 17
                                                                 * * *      * *   

consensus_7931#0      TTATGCTGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAA 120
consensus_7931#1      GCGTACTGATTTAGAA--AGTGGCGACTATGTTCTAGAAAGTGGCGACTATGTTCTAGAA 75
                         * ***   *   *  * * *      ** * **************************

consensus_7931#0      AGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGT 180
consensus_7931#1      AGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGT 135
                      ************************************************************

consensus_7931#0      CAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACT 240
consensus_7931#1      CAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACT 195
                      ************************************************************

consensus_7931#0      GATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAAT 300
consensus_7931#1      GATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAAT 255
                      ************************************************************

consensus_7931#0      CAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAG 360
consensus_7931#1      CAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAG 315
                      ************************************************************

consensus_7931#0      GAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCT 420
consensus_7931#1      GAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCT 375
                      ************************************************************

consensus_7931#0      TCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTAGA 480
consensus_7931#1      TCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTAGA 435
                      ************************************************************

consensus_7931#0      CCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAAAAGGAACCAGTAGAA 540
consensus_7931#1      CCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAAAAGGAGCCAGTAGAA 495
                      ************************************************** *********

consensus_7931#0      ATTGGGAAATCTTACCTAAAGCGACAACTTCAAGGTGTTTTACGGGTGCAAA-GAGGCCA 599
consensus_7931#1      ATTGGGAAATCTTACCTANAGCGACAACTTCAAGGTGTTTTACGGGTGCANAAGAGGCCA 555
                      ****************** ******************************* * *******

consensus_7931#0      GTATCAGAAACTAAAATTCCAAAGCTTGATGGTGATTCTGAAGCATCAGCCAT------- 652
consensus_7931#1      GTATCAGAAACTAAAATTCCAAAGCTTGATGGTGATTCTGAAGCATCAGCCATGAATAAC 615
                      *****************************************************       

consensus_7931#0      -
consensus_7931#1      A 616