These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 652 fasta sequence [ACTGCCGAAAATGTAGATTACTTGGGCCTAAGACATTATCGATTTTACATCCGATGTCCTTTATGCTGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAAAGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGTCAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTAGACCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAAAAGGAACCAGTAGAAATTGGGAAATCTTACCTAAAGCGACAACTTCAAGGTGTTTTACGGGTGCAAAGAGGCCAGTATCAGAAACTAAAATTCCAAAGCTTGATGGTGATTCTGAAGCATCAGCCAT] [+] EMBL CD154411 [ACTGCCGAAAATGTAGATTACTTGGGCCTAAGACATTATCGATTTTACATCCGATGTCCTTTATGCTGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAAAGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGTCAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCA ] [+] EMBL CD096476 [ TGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAAAGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGTCAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTAGACCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAAAAGGAACCAGTAGAAATTGGGAAATCTTACCTAAAGCGACAACTTCAAGGTGTTTTACGGGTGCAAAGAGGCCAGTATCAGAAACTAAAATTCCAAAGCTTGATGGTGATTCTGAAGCATCAGCCAT] [+] EMBL CD096437 [ TGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAAAGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGTCAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAGATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTAGACCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAAAAGGAACCAGTAGAAATTGGGAAATCTTACCTAAAGCGACAACTTCAAG ] [+] EMBL CD192559 [ AATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTA ] [+] EMBL CD192560 [ AATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTA ] consensusID : consensus_7931#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [TGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAAAGTGGCGACTATGTTCTAGAAAGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGTCAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTAGACCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAAAAGGAGCCAGTAGAAATTGGGAAATCTTACCTANAGCGACAACTTCAAGGTGTTTTACGGGTGCANAAGAGGCCAGTATCAGAAACTAAAATTCCAAAGCTTGATGGTGATTCTGAAGCATCAGCCATGAATAACA] [+] EMBL CD096391 [TGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAAAGTGGCGACTATGTTCTAGAAAGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGTCAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACTGATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAATCAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAGGAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCTTCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTAGACCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAAAAGGAGCCAGTAGAAATTGGGAAATCTTACCTANAGCGACAACTTCAAGGTGTTTTACGGGTGCANAAGAGGCCAGTATCAGAAACTAAAATTCCAAAGCTTGATGGTGATTCTGAAGCATCAGCCATGAATAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7931#0 ACTGCCGAAAATGTAGATTACTTGGGCCTAAGACATTATCGATTTTACATCCGATGTCCT 60 consensus_7931#1 -------------------------------------------TGTGCTGAGATTATTTG 17 * * * * * consensus_7931#0 TTATGCTGTGCTGAGATTATTTGGCGTACTGATTTAGAAAGTGGCGACTATGTTCTAGAA 120 consensus_7931#1 GCGTACTGATTTAGAA--AGTGGCGACTATGTTCTAGAAAGTGGCGACTATGTTCTAGAA 75 * *** * * * * * ** * ************************** consensus_7931#0 AGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGT 180 consensus_7931#1 AGTGGGGCTAAAAGAAACTTCGAAGCATTAAAAACAGCGGAAGAACTAGAAGCTAAACGT 135 ************************************************************ consensus_7931#0 CAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACT 240 consensus_7931#1 CAAGCTGAAGAGGAAGAAGAACTTGCTAATAATCCAATGAAATTATTGGAAAAAAGAACT 195 ************************************************************ consensus_7931#0 GATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAAT 300 consensus_7931#1 GATCAAAGCAAACAAGAAATGGAAATGGTCGAAGTAATTGAAGACTTGAAACAGTTAAAT 255 ************************************************************ consensus_7931#0 CAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAG 360 consensus_7931#1 CAACGTCAAGCCACCATGGAAGCAGATCATGTTCTTTTGAGGCAAATGTGGCGAGAAGAG 315 ************************************************************ consensus_7931#0 GAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCT 420 consensus_7931#1 GAAGCCCTCAAGGAGGCTGAAAAAGAAGAAGATGATGCACTAATAAAGGAGTTACTCGCT 375 ************************************************************ consensus_7931#0 TCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTAGA 480 consensus_7931#1 TCAAAATCCGAGCAAGTCCATTCATTACCATTGGAGTTTGGAGGTGAAAATTCCTCTAGA 435 ************************************************************ consensus_7931#0 CCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAAAAGGAACCAGTAGAA 540 consensus_7931#1 CCAATCAAGATGCCAGCTTTGAAAGATTTGATGAAAGCCAATAAAAAGGAGCCAGTAGAA 495 ************************************************** ********* consensus_7931#0 ATTGGGAAATCTTACCTAAAGCGACAACTTCAAGGTGTTTTACGGGTGCAAA-GAGGCCA 599 consensus_7931#1 ATTGGGAAATCTTACCTANAGCGACAACTTCAAGGTGTTTTACGGGTGCANAAGAGGCCA 555 ****************** ******************************* * ******* consensus_7931#0 GTATCAGAAACTAAAATTCCAAAGCTTGATGGTGATTCTGAAGCATCAGCCAT------- 652 consensus_7931#1 GTATCAGAAACTAAAATTCCAAAGCTTGATGGTGATTCTGAAGCATCAGCCATGAATAAC 615 ***************************************************** consensus_7931#0 - consensus_7931#1 A 616 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||