These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 744 fasta sequence [TAAACTTGAAAAATTCAAGCCAGTATGTTTGGATTGTTATTATGATAACAAAAGTTTGAATGACTCTGAAGAACAACTTTGTTCATTCGCTTCTTCAAGTCGTGCATTTCTTGTAGCATCAAAATTAAAACCTAATAAAACTTGTCATGAAGTTCGCTCACGCAATGATCCGAAGACTGATGAGCTTATTAAGAGGTTTGAGGACCTTAAGAAGAATCAAGTCAAAGT---AGATGTCTCTCTTTTAGAATATCGATTCCGACAGCTCAAAGGACTGACTGAAGAAAAACCTGCTTCTTCTGAGAACTCTTCATTACCAAAGGCCGATCAAGTTTCTAAAATTGTGGAACGGTACATGGAAGAAGCACAGATTGATGCAAAATGTGGTGTTGATTTTGGTCTGGACGATGATCCCACTGTAATGGAAAATTCTCCTTCGTGCTATATGTGTGAAGGAGTTGCTGAGTTGTCGTGCAGAGAATGCGACGATAATTTTTGCAAACGGTGTTTCAATAAGACACACAATAAACGAGAGAGATTTGAACATCAAACTGGAATTTGCAAATAAACTCCAATACAATTGTT-CGTCATTGTTTTCTTTTAAGATGAAATACATTACTATTATTATCCATTACTTCCCGTCATGTAGATACTTGATTTGACTTCAGACTCTGTTACTTGTCTTTCTCCTGCTCTCCGCTTACTGTTG-TTGACTTTTGTACATTTGTATTTAT-TTCTAATAATTAT] [+] EMBL CD078953 [TAAACTTGAAAAATTCAAGCCAGTATGTTTGGATTGTTATTATGATAACAAAAGTTTGAATGACTCTGAAGAACAACTTTGTTCATTCGCTTCTTCAAGTCGTGCATTTCTTGTAGCATCAAAATTAAAACCTAATAAAACTTGTCATGAAGTTCGCTCACGCAATGATCCGAAGACTGATGAGCTTATTAAGAGGTTTGAGGACCTTAAGAAGAATCAAGTCAAAGT AGATGTCTCTCTTTTAGAATATCGATTCCGACAGCTCAAAGGACTGACTGAAGAAAAACCTGCTTCTTCTGAGAACTCTTCATTACCAAAGGCCGATCAAGTTTCTAAAATTGTGGAACGGTACATGGAAGAAGCACAGATTGATGCAAAATGTGGTGTTGATTTTGGTCTGGACGATGATCCCACTGTAATGGAAAATTCTCCTTCGTGCTATATGTGTGAAGGAGTTGCTGAGTTGTCGTGCAGAGAATGCGACGATAATTTTTGCAAACGGTGTTTCAATAAGACACACAATATACGAGAGAGATTTGAACATCATACTGGAATTTGCANATAAACTTCAATACAATTGTT CGTCATTGTTTTCTTTTAAGATGAAATACATTACTATTATTATCCAT ] [+] EMBL CD078791 [ TGAAGAACAACTTTGTTCATTCGCTTCTTCAAGTCGTGCATTTCTTGTAGCATCAAAATTAAAACCTAATAAAACTTGTCATGAAGTTCGCTCACGCAATGATCCGAAGACTGATGAGCTTATTAAGAGGTTTGAGGACCTTAAGAAGAATCAAGTCAAAGTAGAAGATGTCTCTCTTTTAGAATATCGATTCCGACAGCTCAAAGGACTGACTGAAGAAAAACCTGCTTCTTCTGAGAACTCTTCATTACCAAAGGCCGATCAAGTTTCTAAAATTGTGGAACGGTACATGGAAGAAGCACAGATTGATGCAAAATGTGGTGTTGATTTTGGTCTGGACGATGATCCCACTGTAATGGAAAATTCTCCTTCGTGCTATATGTGTGAAGGAGTTGCTGAGTTGTCGTGCAGAGAATGCGACGATAATTTTTGCAAACGGTGTTTCAATAAGACACACAATAAACGAGAGAGATTTGAACATCAAACTGGAATTTGCAAATAAACTCCAATACAATTGTT CGTCATTGTTTTCTTTTAAGATGAAATACATTACTATTATTATCCATTACTTCCCGTCATGTAGATACTTGATTTGACTTCAGACTCTGNTACTTGTCTTTCTCCTGCTCTCCGCTTACTGGTG NTGACTTTTGTACATTTGTATTTAT TTCTAATAAaat ] [-] EMBL CD073407 [ TTCGCTCACGCAATGATCCGAAGACTGATGAGCTTATTAAGAGGTTTGAGGACCTTAAGAAGAATCAAGTCAAAGT AGATGTCTCTCTTTTAGAATATCGATTCCGACAGCTCAAAGGACTGACTGAAGAAAAACCTGCTTCTTCTGAGAACTCTTCATTACCAAAGGCCGATCAAGTTTCTAAAATTGTGGAACGGTACATGGAAGAAGCACAGATTGATGCAAAATGTGGTGTTGATTTTGGTCTGGACGATGATCCCACTGTAATGGAAAATTCTCCTTCGTGCTATATGTGTGAAGGAGTTGCTGAGTTGTCGTGCAGAGAATGCGACGATAATTTTTGCAAACGGTGTTTCAATAAGACACACAATAAACGAGAGAGATTTGAACATCAAACTGGAATTTGCAAATAAACTTCAATACAATTGTT CGTCATTGTTTTCTTTTAAGATGAAATACATTACTATTATTATCCATTACTTCCCGTCATGTAGATACTTGATTTGACTTCAGACTCTGTTACTTGTCTTTCTCCTGCTCTCCGCTTACTGTTG TTGACTTTTGTACATTTGTATTTAT TTCTAATAGTTAT] [-] EMBL CD073252 [ GAAGACTGATGAGCTTATTAAGAGGTTTGAGGACCTTAAGAAGAATCAAGTCAAAGTAGAAGATGTCTCTCTTTTAGAATATCGATTCCGACAGCTCAAAGGACTGACTGAAGAAAAACCTGCTTCTTTTGAGAACTCTTCATTACCAAAGGCCGATCAAGTTTCTAAAATTGTGGAACGGTACATGGAAGAAGCACAGATTGATGCAAAATGTGGTGTTGATTTTGGTCTGGACGATGATCCCACTGTAATGGAAAATTCTCCTTCGTGCTATATGTGTGAAGGAGTTGCTGAGTTGTCGTGCAGAGAATGCGACGATAATTTTTGCAAACGGTGTTTCAATAAGACACACAATAAACGAGAGAGATTTGAACATCAAACTGGAATTTGCAAATAAACTCCAATACAATTGTT CGTCATTGTTTTCTTTTAAGATGAAATACATTACTATTATTATCCATTACTTCCCGTCATGTAGATACTTGATTTGACTTCAGACTCTGTTACTTGTCTTTCTCCTGCTCTCCGCTTACTGTTG TTGACTTTTGTACATTTGTATTTAT TTCTAATAATTAT] [-] EMBL SMAA69930 [ GATAATTTTTGCAAACGGTGTTTCAATAAGACACACAATAAACGAGAGAGATTTGAACATCAAACTGGAATTTGCAAATAAACTCCAATACAATTGTTCCGTCATTGTTTTCTTTTAAAATGAAATACATTACTATTATTATCCATTACTTCCCGTCATGTAGATACTTGATTTGACTTCAGACGCTGTTACTTGTCTTTCTCCTGCTCTCCGCTTACTGTTGTTTGACTTTTGTACATTTGTATTTATNTTCTAATAATTAT] consensusID : consensus_7933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [CACCTGCTTAATTTACGCTTTAAAAAACTCTTGTGAAGACGGTGAACTACCTTTATTCCTCAAGATGCTTTGTGAACTATGTAGAGTTGAGTTTTCATCGTCGAATAAAAAGGTATTCAAAGATTAATTCAAATAGTCAGCAGAAATCCTGTAAAATGTGTGGCTCAGTACAATGTTCGAGATGTTTGAAGTTTAAACTTGAAAAATTTCAAGCCAGTATGTTTGGATTGTTATTATGATAACAAAAGTTTGAATGACTCTGAAGAACAACTTTGTTCATTCGCTTCTTCAAGGTATTCCGGCTTTTGGTTAATGTACCAGTCGTGCATTTCTTGTAGCATCAAAATTAAAACCTAATAAAACTTGTCATGAAGTTCGCTCACGCAATGGTATGAAAATTCC] [+] EMBL CD197215 [CACCTGCTTAATTTACGCTTTAAAAAACTCTTGTGAAGACGGTGAACTACCTTTATTCCTCAAGATGCTTTGTGAACTATGTAGAGTTGAGTTTTCATCGTCGAATAAAAAGGTATTCAAAGATTAATTCAAATAGTCAGCAGAAATCCTGTAAAATGTGTGGCTCAGTACAATGTTCGAGATGTTTGAAGTTTAAACTTGAAAAATTTCAAGCCAGTATGTTTGGATTGTTATTATGATAACAAAAGTTTGAATGACTCTGAAGAACAACTTTGTTCATTCGCTTCTTCAAGGTATTCCGGCTTTTGGTTAATGTACCAGTCGTGCATTTCTTGTAGCATCAAAATTAAAACCTAATAAAACTTGTCATGAAGTTCGCTCACGCAATGGTATGAAAATTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7933#0 TAAACTTGAAAAATTCAAGCCAGTATGTTTGGATTGTTATTATGATAACAAAAGTTTGAA 60 consensus_7933#1 --CACCTGCTTAATTTACGC-------TTTAAAAAACTCTTGTGAAGACGG----TGAAC 47 ** ** **** * ** *** * * ** *** ** * * consensus_7933#0 TGACTCTGAAGAACAACTTTGTTCATTCGCTTCTTCAAGTCGTGCATTTCTTGTAGCATC 120 consensus_7933#1 TACCTTTATTCCTCAAGATGCTTTGTGAACTATGTAGAGTTGAGTTTTCATCGTCGAATA 107 * ** * *** * ** * ** * *** * * ** * ** * ** consensus_7933#0 AAAA-----TTAAAACCTAATAAAACTTGTCATGAAGTTCGCTCACGCAATGATCCGAAG 175 consensus_7933#1 AAAAGGTATTCAAAGATTAATTCAAATAGTCAGCAGA---AATCCTGTAA-AATGTGTGG 163 **** * *** **** ** * **** * ** * ** ** * * consensus_7933#0 ACTGATGAGCTTATTAAGAGGTTTGAGGACCTTAAGAAGAATCAAGTCAAAGTAGATGTC 235 consensus_7933#1 CTCAGTACAATGTTCGAGATGTTTGAAG--TTTAAACTTGAAAAATTTCAAGCCAGTATG 221 * * * *** ****** * **** * ** * *** * * consensus_7933#0 TCTCTTTTAGAATATCGATTCCGACAGCTCAAAGGACTGACTGAAGAAAAACCTGCTTCT 295 consensus_7933#1 TTTGGATTGTTATTATGATAACAAAAGTTTGAATGACT--CTGAAGAACAACTTTGTTCA 279 * * ** ** *** * * ** * ** **** ******** *** * *** consensus_7933#0 TCTGAGAACTCTTCATTACCAAAGGCCGA--TCAAGTTTCTAAAATTGTGGAACGGTACA 353 consensus_7933#1 TTCG------CTTCTTCAAGGTATTCCGGCTTTTGGTTAATGTACCAGTCGTGCATTTCT 333 * * **** * * * *** * *** * * ** * * * * consensus_7933#0 TGGAAGAAGCACAGATTGATGCAAAATGTGGTGTTGATTTTGGTCTGGACGATGATCCCA 413 consensus_7933#1 TGTA-GCATCA-AAATTAAAACCTAATA-------AAACTTGTCATGAAGTTCGCTCACG 384 ** * * * ** * *** * * *** * *** ** * * ** * consensus_7933#0 CTGTAATG-GAAAATTCTCCTTCGTGCTATATGTGTGAAGGAGTTGCTGAGTTGTCGTGC 472 consensus_7933#1 CAATGGTATGAAAATTCC------------------------------------------ 402 * * * ******** consensus_7933#0 AGAGAATGCGACGATAATTTTTGCAAACGGTGTTTCAATAAGACACACAATAAACGAGAG 532 consensus_7933#1 ------------------------------------------------------------ consensus_7933#0 AGATTTGAACATCAAACTGGAATTTGCAAATAAACTCCAATACAATTGTTCGTCATTGTT 592 consensus_7933#1 ------------------------------------------------------------ consensus_7933#0 TTCTTTTAAGATGAAATACATTACTATTATTATCCATTACTTCCCGTCATGTAGATACTT 652 consensus_7933#1 ------------------------------------------------------------ consensus_7933#0 GATTTGACTTCAGACTCTGTTACTTGTCTTTCTCCTGCTCTCCGCTTACTGTTGTTGACT 712 consensus_7933#1 ------------------------------------------------------------ consensus_7933#0 TTTGTACATTTGTATTTATTTCTAATAATTAT 744 consensus_7933#1 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||