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Schistosoma mansoni
cluster # 7937 cluster # 7937       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7937#0 length = 885 sequences # 2  
consensus_7937#1 length = 791 sequences # 4  

consensusID : consensus_7937#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 885
fasta sequence
                              [GGCAGGACTGATTCTAGATCTTTAGTCCACTTGCAATTATTAGTCTTTCGGAAGATGCACTCTACTTCAGATGAAGAATATATCCCTCCAGTCAAAGCTTCTAAATTGGAAGAAGACTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGCTGATTATTTAGGAACTCGAAACAATCCAAGGTTTGCTAATTAGTGCCAATAGTGGCAAAGTTTTAGATTTCCGACTGTTCACCGCTTTCCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGTGGGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAANAATCGCGTCTTGACTGGAAAGCATATGTAGAGAAAGAATCTCTGGAAGATGACCTCAAGCCCACNNACAAGGAAAGAAGGTATCTGGAANGGGCAGCATCTCACAGAGCAGTGACGTGATATCATATGACGACATTGAAAGTCACATCGAGTCGAAACTGATACACTTGCACATATTCGTATACGGATGTGCAGTATTATCAGATNACTCATGTTATGCAGCGCCAACTCAGGATTATGAGCAAAGTGGGGTATTACGCATAA]

[+] EMBL CD082164             [   AGGACTGATTCTAGATCTTTAGTCCACTTGCAATTATTAGTCTTTCGGAAGATGCACTCTACTTCAGATGAAGAATATATCCCTCCAGTCAAAGCTTCTAAATTGGAAGAAGACTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGCTGATTATTTAGGAACTCGAAACAATCCAAGGTTTGCTAATTAGTGCCAATAGTGGCAAAGTTTTAGATTTCCGACTGTTCACCGCTTTCCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGTGGGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAANAATCGCGTCTTGACTGGAAAGCATATGTAGAGAAAGAATCTCTGGAAGATGACCTCAAGCCCACNNACAAGGAAAGAAGGTATCTGGAANGGGCAGCATCTCACAGAGCAGTGACGTGATATCATATGACGACATTGAAAGTCACATCGAGTCGAAACTGATACACTTGCACATATTCGTATACGGATGTGCAGTATTATCAGATNACTCATGTTATGCAGCGCCAACTCAGGATTATGAGCAAAGTGGGGTATTACGCATAA]
[+] EMBL CD078792             [ggcaatttTGATTCTAGATCTTTAGTCCACTTGCAATTATGAGTCTTTCGGAAGATG ACTCTACTTCAGATGAAGAATATATCCCTCCAGTCAAAGCTTCTAAATTGGAAGAAGACTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGCTGATTATTTAGGAACTCGAAACAATCCAAGGTTTGCTAATTAGTGCCAATAGTGGCAAAGTTTTAGATTTCCGACTGTTCACCGCTTTCCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGTGGGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACANATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAg                                                                                                                                                                                                                                                   ]


>consensus_7937#0 GGCAGGACTGATTCTAGATCTTTAGTCCACTTGCAATTATTAGTCTTTCGGAAGATGCAC TCTACTTCAGATGAAGAATATATCCCTCCAGTCAAAGCTTCTAAATTGGAAGAAGACTCT GAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTC ACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGCTGATTATTTAGGAACTCGAAACAA TCCAAGGTTTGCTAATTAGTGCCAATAGTGGCAAAGTTTTAGATTTCCGACTGTTCACCG CTTTCCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGTGGGACGAGTTTCTAAAA TCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAG TTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGC TTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCG CATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTA CCCAGGTTGTCTACCTTAGAANAATCGCGTCTTGACTGGAAAGCATATGTAGAGAAAGAA TCTCTGGAAGATGACCTCAAGCCCACNNACAAGGAAAGAAGGTATCTGGAANGGGCAGCA TCTCACAGAGCAGTGACGTGATATCATATGACGACATTGAAAGTCACATCGAGTCGAAAC TGATACACTTGCACATATTCGTATACGGATGTGCAGTATTATCAGATNACTCATGTTATG CAGCGCCAACTCAGGATTATGAGCAAAGTGGGGTATTACGCATAA



consensusID : consensus_7937#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 791
fasta sequence
                              [CTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGGAACTCGAAACAATCCAAGATTTCCGACTGTTCACCGCTTTTCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGGGGGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCAATATGTAGAGAAAGAATCTCTGGAAGATG-ACCTCAAAGCCCACAACAAAGGGAAAGAAGGGTATCTGGAAAGGCAAGCATTCTTCAACAGAGCAAGTGAACGTGAATATCAATATGAACGACAATTGAAAAAGTCAACATCGAGTCGGAAAACCTGAATACGACTATGCACATAATTCGTTTATCAACGGAATGTTGCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGCAGTCCCACACTTCAGTGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAATAAAAAAGTCCC]

[+] EMBL CD191729             [CTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGGAACTCGAAACAATCCAAGATTTCCGACTGTTCACCGCTTTTCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGGGGGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCAATATGTAGAGAAAGAATCTCTGGAAGATGAACCTC AAGCC                                                                                                                                                                                                                                                                               ]
[-] EMBL CD073253             [                                                                                                                                                                                     GACGAGTTTTTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCAATATGTAGAGAAAGAATCTCTGGAAGATG ACCTCAAAGCCCACAACAAAGGGAAAGAAGGGTATCTGGAAAGGCAAGCATTCTTCAACAGAGCAAGTGAACGTGAATATCAATATGAACGACAATTGAAAAAGTCAACATCGAGTCGGAAAACCTGAATACGACTATGCACATAATTCGTTTATCAACGGAATGTTGCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGCAGTCCCACACTTCAGTGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAATAAAAAAGT   ]
[-] EMBL CD075780             [                                                                                                                                                                                                                                                    AAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCAATATGTAGAGAAAGAATCTCTGGAAGATG ACCTCAAAGCCCACAACAAAGGGAAAGAAGGGTATCTGGAAAGGCAAGCATTCTTCAACAGAGCAAGTGAACGTGAATATCAATATGAACGACAATTGAAAAAGTCAACATCGAGTCGGAAAACCTGAATACGACTATGCACATAATTCGTTTATCAACGGAATGTTGCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGCAGTCCCACACTTCAGTGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAATAAAAAAGTCCC]
[-] EMBL AI976976             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tCTGGAAGCAATATGTAGAGAAAAAATCTTTGGAATATG ACCTCAAAGCCCTCATCAAAGGGAAAGAAGGGTATTTGGAAAGGCAAGCATTTTTCAACAGAGCAAGTGAACGTGAATATCAATATGACCGACAATTGAAAAAGTCAACATCGAGTGGGAAAACCTGAATACGACTATGCACATAATTCGTTTATCAACGGAATGTTGCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGCAGTCCCACACTTCAGTGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAATAAAAAAGTC  ]


>consensus_7937#1 CTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGG TTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGGAACTCGAAACAATCCAAGAT TTCCGACTGTTCACCGCTTTTCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGGG GGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGT TGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTC GAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCT CAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATC TACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCA ATATGTAGAGAAAGAATCTCTGGAAGATGACCTCAAAGCCCACAACAAAGGGAAAGAAGG GTATCTGGAAAGGCAAGCATTCTTCAACAGAGCAAGTGAACGTGAATATCAATATGAACG ACAATTGAAAAAGTCAACATCGAGTCGGAAAACCTGAATACGACTATGCACATAATTCGT TTATCAACGGAATGTTGCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGC AGTCCCACACTTCAGTGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAAT AAAAAAGTCCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7937#0      GGCAGGACTGATTCTAGATCTTTAGTCCACTTGCAATTATTAGTCTTTCGGAAGATGCAC 60
consensus_7937#1      ------------------------------------------------------------
                                                                                  

consensus_7937#0      TCTACTTCAGATGAAGAATATATCCCTCCAGTCAAAGCTTCTAAATTGGAAGAAGACTCT 120
consensus_7937#1      --------------------------------------------------------CTCT 4
                                                                              ****

consensus_7937#0      GAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTC 180
consensus_7937#1      GAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTC 64
                      ************************************************************

consensus_7937#0      ACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGCTGATTATTTAGGAACTCGAAACAA 240
consensus_7937#1      ACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAG------------GAACTCGAAACAA 112
                      ***********************************            *************

consensus_7937#0      TCCAAGGTTTGCTAATTAGTGCCAATAGTGGCAAAGTTTTAGATTTCCGACTGTTCACCG 300
consensus_7937#1      TCCAAG------------------------------------ATTTCCGACTGTTCACCG 136
                      ******                                    ******************

consensus_7937#0      CTTTCCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGTGGGACGAGTTTCTAAAA 360
consensus_7937#1      CTTTTCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGGGGGACGAGTTTCTAAAA 196
                      **** ************************************* *****************

consensus_7937#0      TCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAG 420
consensus_7937#1      TCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAG 256
                      ************************************************************

consensus_7937#0      TTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGC 480
consensus_7937#1      TTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGC 316
                      ************************************************************

consensus_7937#0      TTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCG 540
consensus_7937#1      TTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCG 376
                      ************************************************************

consensus_7937#0      CATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTA 600
consensus_7937#1      CATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTA 436
                      ************************************************************

consensus_7937#0      CCCAGGTTGTCTACCTTAGAANAATCGCGTCTTGACTGGAAAGCATATGTAGAGAAAGAA 660
consensus_7937#1      CCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCAATATGTAGAGAAAGAA 496
                      ********************* *******************   ****************

consensus_7937#0      TCTCTGGAAGATGACCTCAA-GCCCACNN-ACAAGGAAAGAAGG-TATCTGGAANGGGCA 717
consensus_7937#1      TCTCTGGAAGATGACCTCAAAGCCCACAACAAAGGGAAAGAAGGGTATCTGGAAAGGCAA 556
                      ******************** ******   * * ********** ********* **  *

consensus_7937#0      GCATCTC---ACAGAGCA-GTGA-CGTGA-TATCA-TATGA-CGACATT---GAAAGTCA 766
consensus_7937#1      GCATTCTTCAACAGAGCAAGTGAACGTGAATATCAATATGAACGACAATTGAAAAAGTCA 616
                      ****      ******** **** ***** ***** ***** ***** *    *******

consensus_7937#0      -CATCGAGTCGAAA---CTGA-TAC-ACT-TGCACATA-TTCGTATACGGATG------T 812
consensus_7937#1      ACATCGAGTCGGAAAACCTGAATACGACTATGCACATAATTCGTTTATCAACGGAATGTT 676
                       ********** **   **** *** *** ******** ***** **   * *      *

consensus_7937#0      GCAGTA--TTATCAGATN----ACTCATGT---TATGCAGCGCCAACTCAGGATTATGAG 863
consensus_7937#1      GCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGCAGTCCCACACT-TCAG 735
                      *****   ******        *****  *   *****     **   *   * * * **

consensus_7937#0      CAAAGTGGGGTATTACGCATAA---------------------------------- 885
consensus_7937#1      TGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAATAAAAAAGTCCC 791
                         * *    *  * *  ***                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)