These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 885 fasta sequence [GGCAGGACTGATTCTAGATCTTTAGTCCACTTGCAATTATTAGTCTTTCGGAAGATGCACTCTACTTCAGATGAAGAATATATCCCTCCAGTCAAAGCTTCTAAATTGGAAGAAGACTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGCTGATTATTTAGGAACTCGAAACAATCCAAGGTTTGCTAATTAGTGCCAATAGTGGCAAAGTTTTAGATTTCCGACTGTTCACCGCTTTCCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGTGGGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAANAATCGCGTCTTGACTGGAAAGCATATGTAGAGAAAGAATCTCTGGAAGATGACCTCAAGCCCACNNACAAGGAAAGAAGGTATCTGGAANGGGCAGCATCTCACAGAGCAGTGACGTGATATCATATGACGACATTGAAAGTCACATCGAGTCGAAACTGATACACTTGCACATATTCGTATACGGATGTGCAGTATTATCAGATNACTCATGTTATGCAGCGCCAACTCAGGATTATGAGCAAAGTGGGGTATTACGCATAA] [+] EMBL CD082164 [ AGGACTGATTCTAGATCTTTAGTCCACTTGCAATTATTAGTCTTTCGGAAGATGCACTCTACTTCAGATGAAGAATATATCCCTCCAGTCAAAGCTTCTAAATTGGAAGAAGACTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGCTGATTATTTAGGAACTCGAAACAATCCAAGGTTTGCTAATTAGTGCCAATAGTGGCAAAGTTTTAGATTTCCGACTGTTCACCGCTTTCCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGTGGGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAANAATCGCGTCTTGACTGGAAAGCATATGTAGAGAAAGAATCTCTGGAAGATGACCTCAAGCCCACNNACAAGGAAAGAAGGTATCTGGAANGGGCAGCATCTCACAGAGCAGTGACGTGATATCATATGACGACATTGAAAGTCACATCGAGTCGAAACTGATACACTTGCACATATTCGTATACGGATGTGCAGTATTATCAGATNACTCATGTTATGCAGCGCCAACTCAGGATTATGAGCAAAGTGGGGTATTACGCATAA] [+] EMBL CD078792 [ggcaatttTGATTCTAGATCTTTAGTCCACTTGCAATTATGAGTCTTTCGGAAGATG ACTCTACTTCAGATGAAGAATATATCCCTCCAGTCAAAGCTTCTAAATTGGAAGAAGACTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGCTGATTATTTAGGAACTCGAAACAATCCAAGGTTTGCTAATTAGTGCCAATAGTGGCAAAGTTTTAGATTTCCGACTGTTCACCGCTTTCCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGTGGGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACANATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAg ] consensusID : consensus_7937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 791 fasta sequence [CTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGGAACTCGAAACAATCCAAGATTTCCGACTGTTCACCGCTTTTCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGGGGGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCAATATGTAGAGAAAGAATCTCTGGAAGATG-ACCTCAAAGCCCACAACAAAGGGAAAGAAGGGTATCTGGAAAGGCAAGCATTCTTCAACAGAGCAAGTGAACGTGAATATCAATATGAACGACAATTGAAAAAGTCAACATCGAGTCGGAAAACCTGAATACGACTATGCACATAATTCGTTTATCAACGGAATGTTGCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGCAGTCCCACACTTCAGTGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAATAAAAAAGTCCC] [+] EMBL CD191729 [CTCTGAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTCACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGGAACTCGAAACAATCCAAGATTTCCGACTGTTCACCGCTTTTCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGGGGGACGAGTTTCTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCAATATGTAGAGAAAGAATCTCTGGAAGATGAACCTC AAGCC ] [-] EMBL CD073253 [ GACGAGTTTTTAAAATCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCAATATGTAGAGAAAGAATCTCTGGAAGATG ACCTCAAAGCCCACAACAAAGGGAAAGAAGGGTATCTGGAAAGGCAAGCATTCTTCAACAGAGCAAGTGAACGTGAATATCAATATGAACGACAATTGAAAAAGTCAACATCGAGTCGGAAAACCTGAATACGACTATGCACATAATTCGTTTATCAACGGAATGTTGCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGCAGTCCCACACTTCAGTGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAATAAAAAAGT ] [-] EMBL CD075780 [ AAAAAGTATCAGTTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGCTTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCGCATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTACCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCAATATGTAGAGAAAGAATCTCTGGAAGATG ACCTCAAAGCCCACAACAAAGGGAAAGAAGGGTATCTGGAAAGGCAAGCATTCTTCAACAGAGCAAGTGAACGTGAATATCAATATGAACGACAATTGAAAAAGTCAACATCGAGTCGGAAAACCTGAATACGACTATGCACATAATTCGTTTATCAACGGAATGTTGCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGCAGTCCCACACTTCAGTGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAATAAAAAAGTCCC] [-] EMBL AI976976 [ tCTGGAAGCAATATGTAGAGAAAAAATCTTTGGAATATG ACCTCAAAGCCCTCATCAAAGGGAAAGAAGGGTATTTGGAAAGGCAAGCATTTTTCAACAGAGCAAGTGAACGTGAATATCAATATGACCGACAATTGAAAAAGTCAACATCGAGTGGGAAAACCTGAATACGACTATGCACATAATTCGTTTATCAACGGAATGTTGCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGCAGTCCCACACTTCAGTGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAATAAAAAAGTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7937#0 GGCAGGACTGATTCTAGATCTTTAGTCCACTTGCAATTATTAGTCTTTCGGAAGATGCAC 60 consensus_7937#1 ------------------------------------------------------------ consensus_7937#0 TCTACTTCAGATGAAGAATATATCCCTCCAGTCAAAGCTTCTAAATTGGAAGAAGACTCT 120 consensus_7937#1 --------------------------------------------------------CTCT 4 **** consensus_7937#0 GAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTC 180 consensus_7937#1 GAAAGCGAATACAGCGATGAGTCAGAATCAGGAAACTCAGATTGTATTAGTGATGGTTTC 64 ************************************************************ consensus_7937#0 ACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAGCTGATTATTTAGGAACTCGAAACAA 240 consensus_7937#1 ACTAGTCAGGCAAATGAAAAACGTCCTGCTAAAAG------------GAACTCGAAACAA 112 *********************************** ************* consensus_7937#0 TCCAAGGTTTGCTAATTAGTGCCAATAGTGGCAAAGTTTTAGATTTCCGACTGTTCACCG 300 consensus_7937#1 TCCAAG------------------------------------ATTTCCGACTGTTCACCG 136 ****** ****************** consensus_7937#0 CTTTCCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGTGGGACGAGTTTCTAAAA 360 consensus_7937#1 CTTTTCGCTGCCGAAGATGTAAAAGCCTACGAAGATAAAGTGGGGGACGAGTTTCTAAAA 196 **** ************************************* ***************** consensus_7937#0 TCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAG 420 consensus_7937#1 TCCGGTAGTACCGAGAAATCTAATAGCATTGAAAAAGTAAATGTTGTAAAAAAGTATCAG 256 ************************************************************ consensus_7937#0 TTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGC 480 consensus_7937#1 TTTGCTGGAGAGGAAGTTGAAGTCATCCAAACAGTTTCAAACTCGAATCGAACGAAAGGC 316 ************************************************************ consensus_7937#0 TTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCG 540 consensus_7937#1 TTAAGTGTCTTACAGAATAAGACTTCAAGCGAGACAAATCCTCTCAGACCAAAAGCACCG 376 ************************************************************ consensus_7937#0 CATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTA 600 consensus_7937#1 CATTTGGGACTTGGTTTATCTAACGCTCTACAAAACTTGAAATCTACGATAAACAGCCTA 436 ************************************************************ consensus_7937#0 CCCAGGTTGTCTACCTTAGAANAATCGCGTCTTGACTGGAAAGCATATGTAGAGAAAGAA 660 consensus_7937#1 CCCAGGTTGTCTACCTTAGAAAAATCGCGTCTTGACTGGAAGCAATATGTAGAGAAAGAA 496 ********************* ******************* **************** consensus_7937#0 TCTCTGGAAGATGACCTCAA-GCCCACNN-ACAAGGAAAGAAGG-TATCTGGAANGGGCA 717 consensus_7937#1 TCTCTGGAAGATGACCTCAAAGCCCACAACAAAGGGAAAGAAGGGTATCTGGAAAGGCAA 556 ******************** ****** * * ********** ********* ** * consensus_7937#0 GCATCTC---ACAGAGCA-GTGA-CGTGA-TATCA-TATGA-CGACATT---GAAAGTCA 766 consensus_7937#1 GCATTCTTCAACAGAGCAAGTGAACGTGAATATCAATATGAACGACAATTGAAAAAGTCA 616 **** ******** **** ***** ***** ***** ***** * ******* consensus_7937#0 -CATCGAGTCGAAA---CTGA-TAC-ACT-TGCACATA-TTCGTATACGGATG------T 812 consensus_7937#1 ACATCGAGTCGGAAAACCTGAATACGACTATGCACATAATTCGTTTATCAACGGAATGTT 676 ********** ** **** *** *** ******** ***** ** * * * consensus_7937#0 GCAGTA--TTATCAGATN----ACTCATGT---TATGCAGCGCCAACTCAGGATTATGAG 863 consensus_7937#1 GCAGTTATTTATCAAGAATGGTACTCAAATGTTTATGCCCACGCAGTCCCACACT-TCAG 735 ***** ****** ***** * ***** ** * * * * ** consensus_7937#0 CAAAGTGGGGTATTACGCATAA---------------------------------- 885 consensus_7937#1 TGTATTTATATGATGCAAATAGTTGTGGTTAATTATACTGGCAATAAAAAAGTCCC 791 * * * * * *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||