These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 469 fasta sequence [ACTGTTAGATATAATTGTAGACGCTGACGATTTTATGTATCGAAAATACAACCTCAAGAAAGACAACATTGTACTAGCTGGAGAAAAACATATGACTATTTACGACGAAATTCAAAAGAAAAAAAAATTGAATTATATTGCTGGAGGAGCTACATTGAACACAGTTAAAATGATTCAGTGGATAATTCAGAAACCATTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGGGAAATATATTAAGAATGATTGTTCGGCGTTGGACTTAGTGACTGAATTCCAAATCGCGGAGGAACCGCTTATGACCGGAAAGGTAGCAGTCCTAGTCAGCGAAAAATTACGTAGCATGGTTACCTACCTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTGGAGTCTTGTGGAAAAAGCACAAGTGTATTATATTGCAGGTTTCGTAATA] [+] EMBL CD186461 [ACTGTTAGATATAATTGTAGACGCTGACGATTTTATGTATCGAAAATACAACCTCAAGAAAGACAACATTGTACTAGCTGGAGAAAAACATATGACTATTTACGACGAAATTCAAAAGAAAAAAAAATTGAATTATATTGCTGGAGGAGCTACATTGAACACAGTTAAAATGATTCAGTGGATAATTCGGAAACCATTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGGGAAATATATTA ] [+] EMBL CD136730 [ accttcatATTGTACTAGCTGAAGAAAAACATATGACTATTTACGACGAAATTCAAAAGAAAAAAAAATTGAATTATATTGCTGGAGGAGCTACATTGAACACAGTTAAAATGATTCAGTGGATAATTCAGAAACCATTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGGGAAATATATTAAGAATGATTGTTCGGCGTTGGACTTAGTGACTGAATTCCAAATCGCGGAGGAACCGCTTATGACCGGAAAGGTAGCAGTCCTAGTCAGCGAAAAATTACGTAGCATGGTTACCTACCTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTGGAGTCTTGTGGAAAAAGCACAAGTGTATTATATTGCAGGTTTCGTAAT ] [-] EMBL CD158060 [ CGNCGAAATTCAAAAGAAAAAAAAA TGAATTATATTGCTGGAGGAGCTACATTGAACACAGTTAAAATGATTCAGTGGATAATTCAGAAACCGTTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGGGAAATATATTAAGAATGATTGTTCGGCGTTGGACTTAGTGACTGAATTCCAAATCGCGGAGGAACCGCTTATGACCGGAAAGGTTGCAGTCCTAGTCAGCGAAAAATTACGTAGCATGGTTACCTACCTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTGGAGTCTTGTGGAAAAAGCACAAGTGTATTACATTGCAGGTTTCGTAATA] [-] EMBL BG932742 [ GGAACCGCTTATGACCGGAAAGGTAGCAGTCCTAGTCAGCGAAAAATTACGTAGCATGGTTACCTACCTAGGAGCTGCGTGTGATCTTTCTTTAGC ] consensusID : consensus_7938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 404 fasta sequence [GGAGCCACATTGAACACAGTCAAAATGATTCAGTGGATAATTCAGAAACCATTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGGGAAATATATTAAGAATGATTGTCGTGGGTTGGATGTACCGACAGATTTCCAGATCACAACGAAACCGTTGAAAACCGGAAAAGTAGCGGTCCTTATAAGCGAAAAACTACGTAGCATGGTTACCTACTTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTGGAGTCTTGTGGAAAAAGCACAAGTGTATTATATTGCAGGTTTCGTAATACATACCTGTTATGAAGGTATGCTGAAAGTAGCCAAACATTCTCTGGAACATGAGGAGTTGTTCTGCTTCAATCTCAGTGC] [+] EMBL CD111353 [GGAGCCACATTGAACACAGTCAAAATGATTCAGTGGATAATTCAGAAACCATTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGGGAAATATATTAAGAATGATTGTCGTGGGTTGGATGTACCGACAGATTTCCAGATCACAACGAAACCGTTGAAAACCGGAAAAGTAGCGGTCCTTATAAGCGAAAAACTACGTAGCATGGTTACCTACTTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTGGAGTCTTGTGGAAAAAGCACAAGTGTATTATATTGCAGGTTTCGTAATACATACCTGTTATGAAGGTATGCTGAAAGTAGCCAAACATTCTCTGGAACATGAGGAGTTGTTCTGCTTCAATCTCAGTGC] [+] EMBL CD111111 [ GTCGTGGCTTGGATGTACCCACAGATTTCCAGATCACAACGAAACCGTTGAAAACCGGAAAAGTAGCGGTCCTTATAAGCGAAAAACTACGTAGCATGGTTACCTACTTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTGGAGTCTTGTGGAAAAAGCACAAGTGTATTATATTGCAGGTTTCGTAATAAATACCTGTTATGAAGGTATGCTGAAAATAGCCAAACATTCTCTGGAAAATGAGAAGTTGTTCTGCTTCAATCTCAGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7938#0 ACTGTTAGATATAATTGTAGACGCTGACGATTTTATGTATCGAAAATACAACCTCAAGAA 60 consensus_7938#1 ------------------------------------------------------------ consensus_7938#0 AGACAACATTGTACTAGCTGGAGAAAAACATATGACTATTTACGACGAAATTCAAAAGAA 120 consensus_7938#1 ------------------------------------------------------------ consensus_7938#0 AAAAAAATTGAATTATATTGCTGGAGGAGCTACATTGAACACAGTTAAAATGATTCAGTG 180 consensus_7938#1 -------------------------GGAGCCACATTGAACACAGTCAAAATGATTCAGTG 35 ***** ************** ************** consensus_7938#0 GATAATTCAGAAACCATTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGG 240 consensus_7938#1 GATAATTCAGAAACCATTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGG 95 ************************************************************ consensus_7938#0 GAAATATATTAAGAATGATTGTTCGGCGTTGGACTTAGTGACTGAATTCCAAATCGCGGA 300 consensus_7938#1 GAAATATATTAAGAATGATTGTCGTGGGTTGGATGTACCGACAGATTTCCAGATCACAAC 155 ********************** * ****** ** *** ** ***** *** * consensus_7938#0 GGAACCGCTTATGACCGGAAAGGTAGCAGTCCTAGTCAGCGAAAAATTACGTAGCATGGT 360 consensus_7938#1 GAAACCGTTGAAAACCGGAAAAGTAGCGGTCCTTATAAGCGAAAAACTACGTAGCATGGT 215 * ***** * * ******** ***** ***** * ********* ************* consensus_7938#0 TACCTACCTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTG 420 consensus_7938#1 TACCTACTTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTG 275 ******* **************************************************** consensus_7938#0 GAGTCTTGTGGAAAAAGCACAAGTGTATTATATTGCAGGTTTCGTAATA----------- 469 consensus_7938#1 GAGTCTTGTGGAAAAAGCACAAGTGTATTATATTGCAGGTTTCGTAATACATACCTGTTA 335 ************************************************* consensus_7938#0 ------------------------------------------------------------ consensus_7938#1 TGAAGGTATGCTGAAAGTAGCCAAACATTCTCTGGAACATGAGGAGTTGTTCTGCTTCAA 395 consensus_7938#0 --------- consensus_7938#1 TCTCAGTGC 404 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||