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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7939#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1057 fasta sequence
[ACGCTTATATATTTGTTCTGTACAATTAATACATAAATAGAATGATTCTAATATCGCTGTGATTACAAAAGTGAAATCTCAATATTACTTATTCATCGTAATCTTTTACTTGTCTATAACATATACGGATATATTGCAACTCTCGATAATATATGGTCAGGAGCCCTTTCACTCCAAGATACGTCAATCCACCCAGGAAAACTCTGTGTGTAGCAAACTGCACCCGTTTAAATAACAAGTGTCCGAAAACGGTTGATATTGTTGGAAGAGCTAATGCACTACAAAATAAACGAGGTATATCAGAGAGTTCTGGGCGTAGTTCTATATCAACATCATTAACAGGCCAGGTTGGGAGATCTTTGCGTCTGAACAGCTGAATAAATGGTAAACGACTTATATGGTTTCTCCATAAGATAAGCAGTCTGCTTTCCCATTGAACTGCTTTAGCCAAAACAAGACACAAAGGAATAGTCGGGAGACCTAGCAGTAGAAGAGGAGGATCTGTTAGCCGCATAGCCTGTAAACCTTGACGATGTCCATAAACCTGCATTACTGTAACAGCTCCGTACGTTACAGCAGACCAGTAAAATGAGCCGAAAATTATTCCACCAGTAAGAACAAATGATAAAGAGCGAGTAATTTGGTCAACAGACTGAAGAAAATTATAGAAAAATCCGCAATCGGGATAAACTATTATGTATGGTGTATTACATATCTGACATGAAATAGAATTCGATTCTCCTCTGCTATGTTGTTGTTCACTAATCCACCTTTGAAGACACGTTTGATGAACCCATTTCAGTGCGCCACGACAGCGACAGGGTCTGCTCCATAAGTTGGCTGAGTTACCGTCTACTTCAGAACTCAAACAAATCCAGCAGGTTTTGTCTTCTTTTGGAATAAAAGGTGAGACATTGACACTTTGTTCCAACATATCTCAGAGAACTTTGTTTTCCCTTTATTTCAATAGTTACAATTGGAATTTACTTCCAGATTATTAAGTAATAAAAAAGATGTACAACAATTACGAAAAAGACAAGCACAAAAGTAAGACGAC]
[+] EMBL CD076106 [ACGCTTATATATTTGTTCTGTACAATTAATACATAAATAGAATGATTCTAATATCGCTGTGATTACAAAAGTGAAATCTCAATATTACTTATTCATCGTAATCTTTTACTTGTCTATAACATATACGGATATATTGCAACTCTCGATAATATATGGTCAGGAGCCCTTTCACTCCAAGATACGTCAATCCACCCAGGAAAACTCTGTGTGTAGCAAACTGCACCCGTTTAAATAACAAGTGTCCGAAAACGGTTGATATTGTTGGAAGAGCTAATGCACTACAAAATAAACGAGGTATATCAGAGAGTTCTGGGCGTAGTTCTATATCAACATCATTAACAGGCCAGGTTGGGAGATCTTTGCGTCTGAACAGCTGAATAAATGGTAAACGACTTATATGGTTTCTCCATAAGATAAGCAGTCTGCTTTCCCATTGAACTGCTTTAGCCAAAACAAGACACAAAGGAATAGTCGGGAGACCTAGCAGTAGAAGAGGAGGATCTGTTAGCCGCATAGCCTGTAAACCTTGACGATGTCCATAAACCTGCATTACTGTAACAGCTCCGTACGTTACAGCAGACCAGTAAAATGAGCCGAAAATTATTCCACCAGTAAGAACAAATGATAAAGAGCGAGTAATT ]
[-] EMBL CD187213 [ GGGAGATCTTTGCGTCTGAACAGCTGAATAAATGGTAAACGACTTATATGGTTTCTCCATAAGATAAGCAGTCTGCTTTCCCATTGAACTGCTTTAGCCAAAACAAGACACAAAGGAATAGTCGGGAGACCTAGCAGTAGAAGAGGAGGATCTGTTAGCCGCATAGCCTGTAAACCTTGACGATGTCCATAAACCTGCATTACTGTAACAGCTCCGTACGTTACAGCAGACCAGTAAAATGAGCCGAAAATTATTCCACCAGTAAGAACAAATGATAAAGAGCGAGTAATTTGGTCAACAGACTGAAGAAAATTATAGAAAAATCCGCAATCGGGATAAACTATTATGTATGGTGTATTACATATCTGACATGAAATAGAATTCGATTCTCCTCTGCTATGTTGTTGTTCACTAATCCACCTTTGAAGACACGTTTGATG ]
[-] EMBL CD182362 [ CCGCATAGCCTGTAAACCTTGACGATGTCCATAAACCTGCATTACTGTAACAGCTCCGTACGTTACAGCAGACCAGTAAAATGAGCCGAAAATTATTCCCCCAGTAAGAACAAATGATAAAGAGCGAGTAATTTGGTCCACAGACTGAAGAAAATTATAGAAAAATCCGCAATCGGGATAAACTATTATGTATGGTGTATTACATATCTGACATGAAATAG ]
[-] EMBL CD083509 [ TAGCCTGTAAACCTGGACGAGGTCCATAAACCTGCATTACTGTAACAGCTCCGTACGTTACAGCAGACCAGTAAAATGAGCCGAAAATTATTCCACCAGTAAGAACAAATGATAAAGAGCGAGTAATTTGGTCAACAGACTGAAGAAAATNATAGAAAAATCCGCAATCGGGATAAACTATTATGTATGGTGTATTACATATCTGACATGAAATAGAATTCGATTCTCCTCTGCTATGTTGTTGTTCACTAATCCACCTTTGAAGACACGTTTGATGAACCCATTTCAGTGCGCCACGACAGCGACAGGGTCTGCTCCATAAGTTGGCTGAGTTACCGTCTACTTCAGAACTCAAACAAATCCAGCAGGTTTTGTCTTCTTTTGGAATAAAAGGTGAGACATTGACACTTTGTTCCAACATATCTCAGAGAACTTTGTTTTCCCTTTATTTCAATAGTTACAATTGGAATTTA ]
[-] EMBL BG930525 [ TGCTATGTTGTTGTTCACTAATCCACCTTTGAAGACACGTTTGATGAACCCATTTCAGTGCGCCACGACAGCGACAGGGTCTGCTCCATAAGTTGGCTGAGTTACCGTCTACTTCAGAACTCAAACAAATCCAGCAGGTTTTGTCTTCTTTTGGAATAAAAGGTGAGACATTGACACTTTGTTCCAACATATCTCAGAGAACTTTGTTTTCCCTTTATTTCAATAGTTACAATTGGAATTTACTTCCAGATTATTAAGTAATAAAAAAGATGTACAACAATTACGAAAAAGACAAGCACAAAAGTAAGACGAC]
consensusID : consensus_7939#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence
[CGCTTATATATTTGTTCTGTACAATTAATACATAAATAGAATGATTCTAATATCGCTGTGATTACAAAAGTGAAATCTCAATATTACTTATTCATCGTAATCTTTTACTTGTCTATAACATATACGGATATATTGCAACTCTCGATAATATATGGGCAGGCGCCCTTTCACTCCAAGATACGTCAATCCCCCCAGGGGGACCTTTGTTTTTAGCAAACTCCACCCTTTTAAAAAACAAGTTCCCGAGAACGGTTTTTTTTTTTGGGAGGACTTATTGCACTACAAATTAACGGGGTTTTTCAGAGGTTCTGGGCGTAGTCTATATCACATCATTACCGGCCAGGTT]
[+] EMBL SMAA69935 [CGCTTATATATTTGTTCTGTACAATTAATACATAAATAGAATGATTCTAATATCGCTGTGATTACAAAAGTGAAATCTCAATATTACTTATTCATCGTAATCTTTTACTTGTCTATAACATATACGGATATATTGCAACTCTCGATAATATATGGGCAGGCGCCCTTTCACTCCAAGATACGTCAATCCCCCCAGGGGGACCTTTGTTTTTAGCAAACTCCACCCTTTTAAAAAACAAGTTCCCGAGAACGGTTTTTTTTTTTGGGAGGACTTATTGCACTACAAATTAACGGGGTTTTTCAGAGGTTCTGGGCGTAGTCTATATCACATCATTACCGGCCAGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7939#0 ACGCTTATATATTTGTTCTGTACAATTAATACATAAATAGAATGATTCTAATATCGCTGT 60
consensus_7939#1 -CGCTTATATATTTGTTCTGTACAATTAATACATAAATAGAATGATTCTAATATCGCTGT 59
***********************************************************
consensus_7939#0 GATTACAAAAGTGAAATCTCAATATTACTTATTCATCGTAATCTTTTACTTGTCTATAAC 120
consensus_7939#1 GATTACAAAAGTGAAATCTCAATATTACTTATTCATCGTAATCTTTTACTTGTCTATAAC 119
************************************************************
consensus_7939#0 ATATACGGATATATTGCAACTCTCGATAATATATGGTCAGGAGCCCTTTCACTCCAAGAT 180
consensus_7939#1 ATATACGGATATATTGCAACTCTCGATAATATATGGGCAGGCGCCCTTTCACTCCAAGAT 179
************************************ **** ******************
consensus_7939#0 ACGTCAATCCACCCAGGAAAAC-TCTGTGTGTAGCAAACTGCACCCGTTTAAATAACAAG 239
consensus_7939#1 ACGTCAATCCCCCCAGGGGGACCTTTGTTTTTAGCAAACTCCACCCTTTTAAAAAACAAG 239
********** ****** ** * *** * ********* ***** ****** ******
consensus_7939#0 TGTCCGAAAACGGTTGATATTGTTGGAAGAGCTAAT-GCACTACAAAATAAACGAGGTAT 298
consensus_7939#1 TTCCCGAGAACGGTTTTTTTTTTTGGGAGGACTTATTGCACTACAAATTAA-CGGGGTTT 298
* **** ******* * ** **** ** ** ** ********** *** ** *** *
consensus_7939#0 ATCAGAGAGTTCTGGGCGTAGTTCTATATCAACATCATTAACAGGCCAGGTTGGGAGATC 358
consensus_7939#1 TTCAGAG-GTTCTGGGCGTAGT-CTATATCA-CATCATTACC-GGCCAGGTT-------- 346
****** ************** ******** ******** * *********
consensus_7939#0 TTTGCGTCTGAACAGCTGAATAAATGGTAAACGACTTATATGGTTTCTCCATAAGATAAG 418
consensus_7939#1 ------------------------------------------------------------
consensus_7939#0 CAGTCTGCTTTCCCATTGAACTGCTTTAGCCAAAACAAGACACAAAGGAATAGTCGGGAG 478
consensus_7939#1 ------------------------------------------------------------
consensus_7939#0 ACCTAGCAGTAGAAGAGGAGGATCTGTTAGCCGCATAGCCTGTAAACCTTGACGATGTCC 538
consensus_7939#1 ------------------------------------------------------------
consensus_7939#0 ATAAACCTGCATTACTGTAACAGCTCCGTACGTTACAGCAGACCAGTAAAATGAGCCGAA 598
consensus_7939#1 ------------------------------------------------------------
consensus_7939#0 AATTATTCCACCAGTAAGAACAAATGATAAAGAGCGAGTAATTTGGTCAACAGACTGAAG 658
consensus_7939#1 ------------------------------------------------------------
consensus_7939#0 AAAATTATAGAAAAATCCGCAATCGGGATAAACTATTATGTATGGTGTATTACATATCTG 718
consensus_7939#1 ------------------------------------------------------------
consensus_7939#0 ACATGAAATAGAATTCGATTCTCCTCTGCTATGTTGTTGTTCACTAATCCACCTTTGAAG 778
consensus_7939#1 ------------------------------------------------------------
consensus_7939#0 ACACGTTTGATGAACCCATTTCAGTGCGCCACGACAGCGACAGGGTCTGCTCCATAAGTT 838
consensus_7939#1 ------------------------------------------------------------
consensus_7939#0 GGCTGAGTTACCGTCTACTTCAGAACTCAAACAAATCCAGCAGGTTTTGTCTTCTTTTGG 898
consensus_7939#1 ------------------------------------------------------------
consensus_7939#0 AATAAAAGGTGAGACATTGACACTTTGTTCCAACATATCTCAGAGAACTTTGTTTTCCCT 958
consensus_7939#1 ------------------------------------------------------------
consensus_7939#0 TTATTTCAATAGTTACAATTGGAATTTACTTCCAGATTATTAAGTAATAAAAAAGATGTA 1018
consensus_7939#1 ------------------------------------------------------------
consensus_7939#0 CAACAATTACGAAAAAGACAAGCACAAAAGTAAGACGAC 1057
consensus_7939#1 ---------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||