cluster # 7944

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Schistosoma mansoni
cluster # 7944 cluster # 7944 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7944#0 length = 894 sequences # 3
consensus_7944#1 length = 514 sequences # 1

consensus_7944#2 length = 428 sequences # 1
consensus_7944#3 length = 99 sequences # 1

consensusID : consensus_7944#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 894
fasta sequence

                              [GGGCCATATTCGGCACGAGGCAACAAACCAATAAAGAATTTCAAGCTGAACGACTTTTAGAAGAGTCAAGACTTCCAGTTTTCTTTGAAAGATTTACTGAGATACTATCACTGAAATTTTGGGAAGTCTTAGTCAGCCATCCATTTTATGTGATTACTGTCCGACAGATTGCAGCTTTGATTGGTAAAGAAACTCAGTATACATTTTTTCCTATGGCTGTTCGAGCTGTTTACCGTGAAAATGGTATTTTAGGATTTTTCCAGGGTTTTATACCACGTTTAATTGGTGAAATTATTTTAACATCTGCTTATTATTGTTCTTGTCGTCTGGTCAGATTATTAATATTTGGATTAGGTAGAAGATCTACTGAAAATATGAACATCTTACGTGTGTTATTATATTATACATTACATAATTATACTTATCCATTTGAATTAACTGGATGTATTATGGCTGTACATGGTGCAAATTTAATTGGTGCTACTGAATCAAATTCTTTTCATAATTGGTATGAATGTCAACGTTATCTTAGTCAAAATCAACAAACCATACGTGGTTGGCGTCCATTTCTACGAAGTCATGTTCAACAAATCCATTTACCAAAATTAAAAAGCTAGTTATGCTAACAAGGTATGGCAACTTGGACCGATGTATAAATGTGCCTGATCCTACGTTGTAGCTGACTGACTGAGTTTAATGAATTTATATTTATACATAAATAATCTGTATAAAAACAAACAACCATCTTACGCTTAGGTCACATTGGCATTTGTTCTTCACTCTTCTAGTCAATGTAATTCTGTATAGTTTCCATATACATTTTGTTGTTGTTGTTTTTAAATGAGTAAAGCTTGTAGCTGTGATTAAATTAAATTTTACGTCCACCCACCCTCC]

[+] EMBL CD081675             [GGGCCATATTCGGCACGAGGCAACAAACCAATAAAGAATTTCAAGCTGAACGACTTTTAGAAGAGTCAAGACTTCCAGTTTTCTTTGAAAGATTTACTGAGATACTATCACTGAAATTTTGGGAAGTCTTAGTCAGCCATCCATTTTATGTGATTACTGTCCGACAGATTGCAGCTTTGATTGGTAAAGAAACTCAGTATACATTTTTTCCTATGGCTGTTCGAGCTGTTTACCGTGAAAATGGTATTTTAGGATTTTTCCAGGGTTTTATACCACGTTTAATTGGTGAAATTATTTTAACATCTGCTTATTATTGTTCTTGTCGTCTGGTCAGATTATTAATATTTGGATTAGGTAGAAGATCTACTGAAAATATGAACATCTTACGTGTGTTATTATATTATACATTACATAATTATACTTATCCATTTGAATTAACTGGATGTATTATGGCTGTACATGGTGCAAATTTAATTGGTGCTACTGAATCAAATTCTTTTCATAATTGGTATGAATGTCAACGTTATCTTAGTCAAAATCAACAAACCATACGTGGTTGGCGTCCATTTCTACGAAGTCATGTTCAACAAATCCATTTACCAAAATTAAAAAGCTAGTTATGCTAACAAGGTATGGCAACTTGGACCGATGTATAAATGTGCCTGATCCTACGTTGTAGCTGACTGACTGAGTTTAATGAATTTATATTTATACATAAATAATCTGTATAAAAACAAACAACCATCTTACGCTTAGGTCACATTGGCATTTGTTCTTCACTCTTCTAGTCAATGTAATTCTGTATAGTTTCCATATACATTTTGTTGTTGTTGTTTTTAAATGAGTAAAGCTTGTAGCTGTGATTAAATTAAATTNTACGTCCACCCACCCTCC]
[-] EMBL CD076395             [                                                                                                                                                                                                                                                                                                                                                                                                            TATATTATACATTACATAATTATACTTATCCATTTGAATTAACTGGATGTATTATGGCTGTACATGGTGCAAATTTAATTGGTGCTACTGAATCAAATTCTTTTCATAATTGGTATGAATGTCAACGTTATCTTAGTCAAAATCAACAAACCATACGTGGTTGGCGTCCATTTCTACGAAGTCATGTTCAACAAATCCATTTACCAAAATTAAAAAGCTAGTTATGCTAACAAGGTATGGCAACTTGGACCGATGTATAAATGTGCCTGATCCTACGTTGTAGCTGACTGACTGAGTTTAATGAATTTATATTTATACATAAATAATCTGTATAAAAACAAACAACCTTCTTACGCTTAGGTCACATTGGCATTTGTTCTTCACTCTTCTAGTCAATGTAATTCTGTATAGTTTCCATATACATTTTGTTGTTGTTGTTTTTAAATGAGTAAAGCTTGTAGCTGTGATTAAATTAAATTTTACGTC            ]
[+] EMBL CD131698             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TATGAATGTCAACGTTATCTTAGTCAAAATCAACAAACCATACGTGGTTGGCGTCCATTTCTACGAAGTCATGTTCAACAAATCCATTTACCAAAATTAAAAAGCTAGTTATGCTAACAAGGTATGGCAACTTGGACCGATGTATAAATGTGCCTGATCCTACGTTGTAGCTGACTGACTGAGTTTAATGAATTTATATTTATACATAAATAATCTGTATAAAAACAAACAACCATCTTACGCTTAGGTCACATTGGCATTTGTTCTTCACTCTTCTAGTCAATGTAATTCTGTATAGTTTCCATATACATTTTGTTGTTGTTGTTTTTAAATGAGTAAAGCTTGTAGCTGTGATTAAATTAAATTTT                 ]




>consensus_7944#0
GGGCCATATTCGGCACGAGGCAACAAACCAATAAAGAATTTCAAGCTGAACGACTTTTAG
AAGAGTCAAGACTTCCAGTTTTCTTTGAAAGATTTACTGAGATACTATCACTGAAATTTT
GGGAAGTCTTAGTCAGCCATCCATTTTATGTGATTACTGTCCGACAGATTGCAGCTTTGA
TTGGTAAAGAAACTCAGTATACATTTTTTCCTATGGCTGTTCGAGCTGTTTACCGTGAAA
ATGGTATTTTAGGATTTTTCCAGGGTTTTATACCACGTTTAATTGGTGAAATTATTTTAA
CATCTGCTTATTATTGTTCTTGTCGTCTGGTCAGATTATTAATATTTGGATTAGGTAGAA
GATCTACTGAAAATATGAACATCTTACGTGTGTTATTATATTATACATTACATAATTATA
CTTATCCATTTGAATTAACTGGATGTATTATGGCTGTACATGGTGCAAATTTAATTGGTG
CTACTGAATCAAATTCTTTTCATAATTGGTATGAATGTCAACGTTATCTTAGTCAAAATC
AACAAACCATACGTGGTTGGCGTCCATTTCTACGAAGTCATGTTCAACAAATCCATTTAC
CAAAATTAAAAAGCTAGTTATGCTAACAAGGTATGGCAACTTGGACCGATGTATAAATGT
GCCTGATCCTACGTTGTAGCTGACTGACTGAGTTTAATGAATTTATATTTATACATAAAT
AATCTGTATAAAAACAAACAACCATCTTACGCTTAGGTCACATTGGCATTTGTTCTTCAC
TCTTCTAGTCAATGTAATTCTGTATAGTTTCCATATACATTTTGTTGTTGTTGTTTTTAA
ATGAGTAAAGCTTGTAGCTGTGATTAAATTAAATTTTACGTCCACCCACCCTCC

consensusID : consensus_7944#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [GGAAGTGGATCGGACACAAATTAAGGAAATCACGAGGCAATCCCTAACTTGGAATGGTGAAGAGAAGAGGAAAAGAGGAAGGCCAAAGAACACATTACTCTGGGAACTGGAAGCAGATATGAAAAGGATGAATTTTAACTAGAACGAACTTGAAAGGATTGCCCAGGACATTGTTGGATAGAGAATACTGGTGTGTGGCCTATGCTTAAGTAAGATCTGTGATACGTTTCTCTTATCAAAAGATGAAAATATTTTACAACCGGAAAATATTGATAAACTTGGGATAAGATGTTAAAGAATTAATGCTATTTATTTAAACATCACTTTGTAAATTGAAATATTGTTGAAAAAAATATTCTAAACTTTCTTAGATTAGTTAAAAATTTCTCTTTTATGTAAATTCAATATTCCTATCAAAGGAAAATTCAAACATAAAATGCTATCCATAACTAGAATTCCTATCTTTTGCTTTTCAAGATTTTCTCTCACTAATGAACTCCAAGCCCTCAAATGC]

[+] EMBL CD067022             [GGAAGTGGATCGGACACAAATTAAGGAAATCACGAGGCAATCCCTAACTTGGAATGGTGAAGAGAAGAGGAAAAGAGGAAGGCCAAAGAACACATTACTCTGGGAACTGGAAGCAGATATGAAAAGGATGAATTTTAACTAGAACGAACTTGAAAGGATTGCCCAGGACATTGTTGGATAGAGAATACTGGTGTGTGGCCTATGCTTAAGTAAGATCTGTGATACGTTTCTCTTATCAAAAGATGAAAATATTTTACAACCGGAAAATATTGATAAACTTGGGATAAGATGTTAAAGAATTAATGCTATTTATTTAAACATCACTTTGTAAATTGAAATATTGTTGAAAAAAATATTCTAAACTTTCTTAGATTAGTTAAAAATTTCTCTTTTATGTAAATTCAATATTCCTATCAAAGGAAAATTCAAACATAAAATGCTATCCATAACTAGAATTCCTATCTTTTGCTTTTCAAGATTTTCTCTCACTAATGAACTCCAAGCCCTCAAATGC]




>consensus_7944#1
GGAAGTGGATCGGACACAAATTAAGGAAATCACGAGGCAATCCCTAACTTGGAATGGTGA
AGAGAAGAGGAAAAGAGGAAGGCCAAAGAACACATTACTCTGGGAACTGGAAGCAGATAT
GAAAAGGATGAATTTTAACTAGAACGAACTTGAAAGGATTGCCCAGGACATTGTTGGATA
GAGAATACTGGTGTGTGGCCTATGCTTAAGTAAGATCTGTGATACGTTTCTCTTATCAAA
AGATGAAAATATTTTACAACCGGAAAATATTGATAAACTTGGGATAAGATGTTAAAGAAT
TAATGCTATTTATTTAAACATCACTTTGTAAATTGAAATATTGTTGAAAAAAATATTCTA
AACTTTCTTAGATTAGTTAAAAATTTCTCTTTTATGTAAATTCAATATTCCTATCAAAGG
AAAATTCAAACATAAAATGCTATCCATAACTAGAATTCCTATCTTTTGCTTTTCAAGATT
TTCTCTCACTAATGAACTCCAAGCCCTCAAATGC

consensusID : consensus_7944#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [TTTTTTTTTTTTTTTTTTCTCGTAATGACTCTTTTTTTTCAAATACATTTACAAGTGAATTAATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGTGTGGTTTTGTACCTATTTCCATATTTTTTATACTTTCCTTTTCNCCTCTTTCCTTTCGTTCCTTTCGTTCCTTTGGTTCCTTTCGTTCCTTTCTTGGATGATTTTG]

[+] EMBL AI394933             [TTTTTTTTTTTTTTTTTTCTCGTAATGACTCTTTTTTTTCAAATACATTTACAAGTGAATTAATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGTGTGGTTTTGTACCTATTTCCATATTTTTTATACTTTCCTTTTCNCCTCTTTCCTTTCGTTCCTTTCGTTCCTTTGGTTCCTTTCGTTCCTTTCTTGGATGATTTTG]




>consensus_7944#2
TTTTTTTTTTTTTTTTTTCTCGTAATGACTCTTTTTTTTCAAATACATTTACAAGTGAAT
TAATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACC
ATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAA
TATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATA
TCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGG
TTCTTCTGGATGTGGTGTTGGTGTGGTTTTGTACCTATTTCCATATTTTTTATACTTTCC
TTTTCNCCTCTTTCCTTTCGTTCCTTTCGTTCCTTTGGTTCCTTTCGTTCCTTTCTTGGA
TGATTTTG

consensusID : consensus_7944#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 99
fasta sequence

                              [CTATCAATCTGTCAATCCTCACAGTGTCCGGGCCATGGAATAATGAAATAGGACTTCGGTTCTATTTTGTTGGTTTTCGGATCCCGATGAGTCATGGGT]

[+] EMBL CD062576             [CTATCAATCTGTCAATCCTCACAGTGTCCGGGCCATGGAATAATGAAATAGGACTTCGGTTCTATTTTGTTGGTTTTCGGATCCCGATGAGTCATGGGT]




>consensus_7944#3
CTATCAATCTGTCAATCCTCACAGTGTCCGGGCCATGGAATAATGAAATAGGACTTCGGT
TCTATTTTGTTGGTTTTCGGATCCCGATGAGTCATGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7944#1      -----------GGAAGTGGATCGGACACAAATTAAGGAAATCACGAGGCAATCCCTAACT 49
consensus_7944#2      ----------------------------------------------TTTTTTTTTTTTTT 14
consensus_7944#3      ------------------------------------------------------------
consensus_7944#0      GGGCCATATTCGGCACGAGGCAACAAACCAATAAAGAATTTCAAGCTGAACGACTTTTAG 60
                                                                                  

consensus_7944#1      TGGAATGGTGAAGAGAAGAGGAAAAGAGGAAGGCCAAAGAACACATTACTCTGGGAACTG 109
consensus_7944#2      TTTTCTCGTAATGACTCTTTTTTTTCAAATACATTTACAAGTGAATTAATAAATAAATAA 74
consensus_7944#3      ----------------------------------CTATCAATCTGTCAATCCTCACAGTG 26
consensus_7944#0      AAGAGTCAAGACTTCCAGTTTTCTTT-GAAAGATTTACTGAGATACTATCACTGAAATTT 119
                                                          *          *        *   

consensus_7944#1      GAAGCAGATATGAAAAGGATGAATTTTAACTAGAACGAACTTGAAAGGATTGCCCAGGAC 169
consensus_7944#2      TTTGTATTTATTAAATG--TAATGTATAAATAGGGTTATGTTATTACCATTATTATTATT 132
consensus_7944#3      TCCG-GGCCATGGAATA-ATGAAATAGGACTTCGGTTCTATTTTGTTGGTTTTC--GGAT 82
consensus_7944#0      TGGGAAGTCTTAGTCAGCCATCCATTTTATGTGATTACTGTCCGACAGATTGCAGCTTTG 179
                         *      *             *   *           *        **         

consensus_7944#1      ATTGTTGGATAG--AGAATACTGGTGTGTGGCCTATGCTTA--AGTAAGATCTGTGATAC 225
consensus_7944#2      ATTATTATTATA--ACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATC 190
consensus_7944#3      CCCGATGAGTCA--TGGGT----------------------------------------- 99
consensus_7944#0      ATTGGTAAAGAAACTCAGTATACAT-TTTTTCCTATGGCTGTTCGAGCTGTTTACCGTGA 238
                           *            *                                         

consensus_7944#1      GTTTCTCTTATCAAAAGATGAAAATATTTTACAACCGGAAAATATTGATAAACTTGGGAT 285
consensus_7944#2      ATTTTTCATGTTG--------------TTTGCATTTGTATTTTATTCACCTATGTTTACC 236
consensus_7944#3      ------------------------------------------------------------
consensus_7944#0      AAATGGTATTTTAGGATTTTTCCAGGGTTTTATACCACGTTTAATTGGTGAAATTATTTT 298
                                                                                  

consensus_7944#1      AAGATGTTAAAGAATTAATGCTATTTATTTAAACATCACTTTGTAAATTGAAATATTGTT 345
consensus_7944#2      AATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTC-TTCGCCATGTTGTGGTATAGTT 295
consensus_7944#3      ------------------------------------------------------------
consensus_7944#0      AACAT--CTGCTTATTATTGTTCTTGTCGTCTGGTCAGATTATTAATATTTGGATTAGGT 356
                                                                                  

consensus_7944#1      GAAAAAAATATTCTAAACTTTCTTAGATTAGTTAAAAATTTCTCTTTTATGTAAATTCAA 405
consensus_7944#2      TGTGGTTCTTCTGGATGTGGTGTTGGTGTGGTTTTGTACCTAT-TTCCATATTTTTTATA 354
consensus_7944#3      ------------------------------------------------------------
consensus_7944#0      AGAAGATCTACTGAAAATATGAACATCTTACGTGTGTTATTATATTATACATTACATAAT 416
                                                                                  

consensus_7944#1      TATTCCTATCAAAGGAAAATTCAAACATAAAATGCTATCCATAACTAGAATTCCTATCTT 465
consensus_7944#2      CTTTCCTTTTCNC------CTCTTTCCTTTCGTTCCTTTCGTTCCTTTGGTTCCTTTCGT 408
consensus_7944#3      ------------------------------------------------------------
consensus_7944#0      TATACTTATCCATTTGAA-TTAACTGGATGTATTATGGCTGTACATGGTGCAAATTTAAT 475
                                                                                  

consensus_7944#1      TTGCTTTTCAAGATTTTCTCTCACTAATGAACTCCAAGCCCTCAAATGC----------- 514
consensus_7944#2      TC-CTTTCTTGGATGATTTTG--------------------------------------- 428
consensus_7944#3      ------------------------------------------------------------
consensus_7944#0      TGGTGCTACTGAATCAAATTCTTTTCATAATTGGTATGAATGTCAACGTTATCTTAGTCA 535
                                                                                  

consensus_7944#1      ------------------------------------------------------------
consensus_7944#2      ------------------------------------------------------------
consensus_7944#3      ------------------------------------------------------------
consensus_7944#0      AAATCAACAAACCATACGTGGTTGGCGTCCATTTCTACGAAGTCATGTTCAACAAATCCA 595
                                                                                  

consensus_7944#1      ------------------------------------------------------------
consensus_7944#2      ------------------------------------------------------------
consensus_7944#3      ------------------------------------------------------------
consensus_7944#0      TTTACCAAAATTAAAAAGCTAGTTATGCTAACAAGGTATGGCAACTTGGACCGATGTATA 655
                                                                                  

consensus_7944#1      ------------------------------------------------------------
consensus_7944#2      ------------------------------------------------------------
consensus_7944#3      ------------------------------------------------------------
consensus_7944#0      AATGTGCCTGATCCTACGTTGTAGCTGACTGACTGAGTTTAATGAATTTATATTTATACA 715
                                                                                  

consensus_7944#1      ------------------------------------------------------------
consensus_7944#2      ------------------------------------------------------------
consensus_7944#3      ------------------------------------------------------------
consensus_7944#0      TAAATAATCTGTATAAAAACAAACAACCATCTTACGCTTAGGTCACATTGGCATTTGTTC 775
                                                                                  

consensus_7944#1      ------------------------------------------------------------
consensus_7944#2      ------------------------------------------------------------
consensus_7944#3      ------------------------------------------------------------
consensus_7944#0      TTCACTCTTCTAGTCAATGTAATTCTGTATAGTTTCCATATACATTTTGTTGTTGTTGTT 835
                                                                                  

consensus_7944#1      -----------------------------------------------------------
consensus_7944#2      -----------------------------------------------------------
consensus_7944#3      -----------------------------------------------------------
consensus_7944#0      TTTAAATGAGTAAAGCTTGTAGCTGTGATTAAATTAAATTTTACGTCCACCCACCCTCC 894