These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7950#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1316 fasta sequence [CCCTCGGGCCAANAATTCGGCACGAGGCAAATCAATCTTGAGTTGTTAGGACTAGAAAAGATTTGTACAATTTTGTCGAATTTTCCCGATATTAATTTGGATAAATGTAGAACGGATGCTTTAAAATTAGCATTGGCTACACCTCGAAGCCTAACAGCTTGGTCGATTCCCAATAGACAGTATTTAAATCAGAAATGTATGGAAAATAAGGAATTAAAAGTTGAACACGTGAATTTCAAACGAAACGAATCATCAGCTTCTGATTTCTATGAACGTTTAACATCACAGAATGCATGGCCAGATCATTTAGAATGTGATTTCACAGAATCATTAGAATACTCTGATATCGATGTTGCATCAAATGTTTGTGAAAAGCTAAATATATCGTCGAATGCTTTTAAATTAGTCCCATTGCTCAGTGTTAAAGATGCCGTGGTGCATATCAAACGTCCGGATTGTCTAGTTTTAGATGTTCGTAATATCAAAGAATATAATAAATTTCATTTACCTAACAGTATTCATTGTGAGGTTTTCAGATCGGTAATGCTAGATTCTTCATTAATAGGAATTAAAGAAAACAATGATATATCTTCAACTACCACTGACTATAACAATACTTTCGCTCCAGAAAACTGGGAAGTGATTGATTATCCAAGTGGTAATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTGTGGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACTAAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAACGACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTTTGTATACTTTTCAGTAGCAACGACAGTATATCAAACTTCATAAACTCATGTTCTCAATAGTTTCTTGTTTTATCATCTCTTCCTCTCAAGATTGTTATTTGCATACCTCTTCATTCCTTTGGTTTCTGTTTAGTATCAGGATACAGTTTTAAGTTCTGTCTGTTAAATGACGTCAATATTTTCTTCTTTTTCAATATCTTATCAAAATATTTTTGATTTTGTAATATGTGATTGAACGACTGTTGCTAATAACCAGTGATTTGTAGTTTTCTGAATTTCCTTTATATCTTAACCGTCATTTATATGTATCTAATACTTTTCAGCATCACAAACTTGTTTTATTTATATTTTGTAAATTCTAATCAAAAGTGGCT--GGGTTGTCTGGTGAGAAATCAATAAAAATGTTTATAGCGCCT] [+] EMBL CD080345 [CCCTCGGGCCAANAATTCGGCACGAGGCAAATCAATCTTGAGTTGTTAGGACTAGAAAAGATTTGTACAATTTTGTCGAATTTTCCCGATATTAATTTGGATAAATGTAGAACGGATGCTTTAAAATTAGCATTGGCTACACCTCGAAGCCTAACAGCTTGGTCGATTCCCAATAGACAGTATTTAAATCAGAAATGTATGGAAAATAAGGAATTAAAAGTTGAACACGTGAATTTCAAACGAAACGAATCATCAGCTTCTGATTTCTATGAACGTTTAACATCACAGAATGCATGGCCAGATCATTTAGAATGTGATTTCACAGAATCATTAGAATACTCTGATATCGATGTTGCATCAAATGTTTGTGAAAAGCTAAATATATCGTCGAATGCTTTTAAATTAGTCCCATTGCTCAGTGTTAAAGATGCCGTGGTGCATATCAAACGTCCGGATTGTCTAGTTTTAGATGTTCGTAATATCAAAGAATATAATAAATTTCATTTACCTAACAGTATTCATTGTGAGGTTTTCAGATCGGTAATGCTAGATTCTTCATTAATAGGAATTAAAGAAAACAATGATATATCTTCAACTACCACTGACTATAACAATACTTTCGCTCCAGAAAACTGGGAAGTGATTGATTATCCAAGTGGTAATCGTAATCGACCACANATCATACCGGAGTTTTTAGCCTTTCT ] [-] EMBL CD074444 [ AAGTGATTGATTATCCAAGTGGTAATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTGTGGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACTAAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAACGACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTTTGTATACTTTTCAGTAGCAACGACAGTATATCAAACTTCATAAACTCATGTTCTCAATAGTTTCTTGTTTTATCATCTCTTCCTCTCAAGATTGTTATTTGCATACCTCTTCATTCCTTTGGTTTCTGTTTAGTATCAGGATACAGTTTTAAGTTCTGTCTGTTAAATGACGTCAATATTTTCTTCTTTTTCAATATCTTATCAAAATATTTTTGATTTTGTAATATGTGATTGAACGACTGTTGCTAATAACCAGTGATTTGTAGTTTTCTGAATTTCCTTTATATCTTAACCGTCATTTATATGTATCTAATACTTTTCAGCATCACAAACTTGTTTTATTTATATTTTGTAAATTCTAATCAAAAGTGGCT GGGTTGTCTGGTGAGAAATCAATAAAAATGTTTA ] [-] EMBL CD074262 [ AAGTGATTGATTATCCAAGTGGTAATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTGTGGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACTAAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAACGACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTTTGTATACTTTTCAGTAGCAACGACAGTATATCAAACTTCATAAACTCATGTTCTCAATAGTTTCTTGTTTTATCATCTCTTCCTCTCAAGATTGTTATTTGCATACCTCTTCATTCCTTTGGTTTCTGTTTAGTATCAGGATACAGTTTTAAGTTCTGTCTGTTAAATGACGTCAATATTTTCTTCTTTTTCAATATCTTATCAAAATATTTTTGATTTTGTAATATGTGATTGAACGACTGTTGCTAATAACCAGTGATTTGTAGTTTTCTGAATTTCCTTTATATCTTAACCGTCATTTATATGTATCTAATACTTTTCAGCATCACAAACTTGTTTTATTTATATTTTGTAAATTCTAATCAAAAGTGGCT GGGTTGTCTGGTGAGAAATCAATAAAAATGTTTA ] [+] EMBL CD076694 [ ctccAGTATTAAATCAAGTCAAGGAGTCACTAAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAACGACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTTTGTATACTTTTCAGTAGCAACGACAGTATATCAAACTTCATAAACTCATGTTCTCAATAGTTTCTTGTTTTATCATCTCTTCCTCTCAAGATTGTTATTTGCATACCTCTTCATTCCTTTGGTTTCTGTTTAGTATCAGGATACAGTTTTAAGTTCTGTCTGTTAAATGACGTCAATATTTTCTTCTTTTTCAATATCTTATCAAAATATTTTTGATTTTGTAATATGTGATTGAACGACTGTTGCTAATAACCAGTGATTTGTAGTTTTCTGAATTTCCTTTATATCTTAACCGTCATTTATATGTATCTAATACTTTTCAGCATCACAAACTTGTTTTATTTATATTTTGTAAATTCTAATCAAAAGTGGCTTGGGGTTGTCTGGTGAGAAATCAATAAAAATGTTTATAG ] [-] EMBL CD083119 [ AATCAAGTCAAGGAGTCACTAAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAACGACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTTTGTATACTTTTCAGTAGCAACGACAGTATATCAAACTTCATAAACTCATGTTCTCAATAGTTTCTTGTTTTATCATCTCTTCCTCTCAAGATTGTTATTTGCATACCTCTTCATTCCTTTGGTTTCTGTTTAGTATCAGGATACAGTTTTAAGTTCTGTCTGTTAAATGACGTCAATATTTTCTTCTTTTTCAATATCTTATCAAAATATTTTTGATTTTGTAATATGTGATTGAACGACTGTTGCTAATAACCAGTGATTTGTAGTTTTCTGAATTTCCTTTATATCTTAACCGTCATTTATATGTATCTAATACTTTTCAGCATCACAAACTTGTTTTATTTATATTTTGTAAATTCTAATCAAAAGTGGCT GGGTTGTCTGGTGAGAAATCAATAAAAATGTTTATAGCGCCT] consensusID : consensus_7950#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [TCGTCACGAGGAATCGTTTCGCTCCAGAAAACTGGGAAGTGATTGATTATCCAAGTGGTAATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTGTGGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACTAAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAACGACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTTTGTATACTT] [+] EMBL CD077768 [TCGTCACGAGGAATCGTTTCGCTCCAGAAAACTGGGAAGTGATTGATTATCCAAGTGGTAATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTGTGGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACTAAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAACGACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTTTGTATACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7950#0 CCCTCGGGCCAANAATTCGGCACGAGGCAAATCAATCTTGAGTTGTTAGGACTAGAAAAG 60 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 ATTTGTACAATTTTGTCGAATTTTCCCGATATTAATTTGGATAAATGTAGAACGGATGCT 120 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 TTAAAATTAGCATTGGCTACACCTCGAAGCCTAACAGCTTGGTCGATTCCCAATAGACAG 180 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 TATTTAAATCAGAAATGTATGGAAAATAAGGAATTAAAAGTTGAACACGTGAATTTCAAA 240 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 CGAAACGAATCATCAGCTTCTGATTTCTATGAACGTTTAACATCACAGAATGCATGGCCA 300 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 GATCATTTAGAATGTGATTTCACAGAATCATTAGAATACTCTGATATCGATGTTGCATCA 360 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 AATGTTTGTGAAAAGCTAAATATATCGTCGAATGCTTTTAAATTAGTCCCATTGCTCAGT 420 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 GTTAAAGATGCCGTGGTGCATATCAAACGTCCGGATTGTCTAGTTTTAGATGTTCGTAAT 480 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 ATCAAAGAATATAATAAATTTCATTTACCTAACAGTATTCATTGTGAGGTTTTCAGATCG 540 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 GTAATGCTAGATTCTTCATTAATAGGAATTAAAGAAAACAATGATATATCTTCAACTACC 600 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 ACTGACTATAACAATACTTTCGCTCCAGAAAACTGGGAAGTGATTGATTATCCAAGTGGT 660 consensus_7950#1 -TCGTCACGAGGAATCGTTTCGCTCCAGAAAACTGGGAAGTGATTGATTATCCAAGTGGT 59 * * * *** ******************************************* consensus_7950#0 AATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTG 720 consensus_7950#1 AATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTG 119 ************************************************************ consensus_7950#0 TGGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACT 780 consensus_7950#1 TGGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACT 179 ************************************************************ consensus_7950#0 AAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAAC 840 consensus_7950#1 AAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAAC 239 ************************************************************ consensus_7950#0 GACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTT 900 consensus_7950#1 GACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTT 299 ************************************************************ consensus_7950#0 TGTATACTTTTCAGTAGCAACGACAGTATATCAAACTTCATAAACTCATGTTCTCAATAG 960 consensus_7950#1 TGTATACTT--------------------------------------------------- 308 ********* consensus_7950#0 TTTCTTGTTTTATCATCTCTTCCTCTCAAGATTGTTATTTGCATACCTCTTCATTCCTTT 1020 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 GGTTTCTGTTTAGTATCAGGATACAGTTTTAAGTTCTGTCTGTTAAATGACGTCAATATT 1080 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 TTCTTCTTTTTCAATATCTTATCAAAATATTTTTGATTTTGTAATATGTGATTGAACGAC 1140 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 TGTTGCTAATAACCAGTGATTTGTAGTTTTCTGAATTTCCTTTATATCTTAACCGTCATT 1200 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 TATATGTATCTAATACTTTTCAGCATCACAAACTTGTTTTATTTATATTTTGTAAATTCT 1260 consensus_7950#1 ------------------------------------------------------------ consensus_7950#0 AATCAAAAGTGGCTGGGTTGTCTGGTGAGAAATCAATAAAAATGTTTATAGCGCCT 1316 consensus_7950#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||