cluster # 7951

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Schistosoma mansoni
cluster # 7951 cluster # 7951 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7951#0 length = 647 sequences # 2

consensus_7951#1 length = 588 sequences # 4

consensusID : consensus_7951#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 647
fasta sequence

                              [TGCGGACGACCCTAGAGGATCCCCTAATCATACATTATATATTGCGTTATAGACCAAGAAATCATGACAGTCACACAGATAATTATTCATTTTCAGACATGTCTGTACCATGGTTAACAAATTGTGTATCACTAAGTCATTGGGCAACAGTCAAACCAGAACAGAAATCATTGACTTCAAGTTTATTTACGGATTTTAATAAAAAGATAATATCACCAAGTGAACGTGGTTCTAATGGTGATAGTAATACTACTAAAGGCGGAATCTTAATCAAAGATCTGTCCCCAGGTAGCTATGAATTCCAAATCTTAGCCATTTCCCTTGCCGGTCGTGGAGAATGGAGTCCTACTGAAATTTTCAATATTCCATTCTATACAGATTATAATGGCGTAGTAAACCAAAGAAAACTTGCAAATATTTGCACAATCACTGTAGGTGCATTTTCGTTGCTCTGTTTCATTTTCGGGATTATTTGGTACAAAGCACGTCGTTATTATTTAAAGGTTACAGCTTGGACATCAAACAATCCTGATTATTGTACAATTTATGAAGTTGACGATTGGGAAATTACTAAAGACGATGTTGATGTTTTACATTGGAAATATCCAATTGGTCGGGGGAAGTTTTGGT-CTGGATATAAAGGTGTG]

[+] EMBL CD167078             [TGCGGACGACCCTAGAGGATCCCCTAATCATACATTATATATTGCGTTATAGACCAAGAAATCATGACAGTCACACAGATAATTATTCATTTTCAGACATGTCTGTACCATGGTTAACAAATTGTGTATCACTAAGTCATTGGGCAACAGTCAAACCAGAACAGAAATCATTGACTTCAAGTTTATTTACGGATTTTAATAAAAAGATAATATCACCAAGTGAACGTGGTTCTAATGGTGATAGTAATACTACTAAAGGCGGAATCTTAATCAAAGATCTGTCCCCAGGTAGCTATGAATTCCAAATCTTAGCCATTTCCCTTGCCGGTCGTGGAGAATGGAGTCCTACTGAAATTTTCAATATTCCATTCTATACAGATTATAATGGCGTAGTAAACCAAAGAAAACTTGCAAATATTTGCACAATCACTGTAGGTGCATTTTCGTTGCTCTGTTTCATTTTCGGGATTATTTGGTACAAAGCACGTCGTTATTATTTAAAGGTTACAGCTTGGACATCAAACAATCCTGATTATTGTACAATTTATGAAGTTGACGATTGGGAAATTACTAAAGACGATGTTGATGTTTTACATTGGAAATATCCAATTGGTCGGGGGAAGTTTTGGT CTGGATATAAAGGTGTG]
[+] EMBL CD167064             [                                                                                                                                                                                                                                                                                                                                           gaccctanaGATTCC CCTGAAATTTTCAATATTCCATTCTATACAGATTATAATGGCATAGTAAACCAAAGATAACTTGCAAATATTTGCACAATCACTGTAGGTGCATTTTCGTTGCTCTGTTTCATTTTCGGGATTATTTGGTATAAAGCACGTCGTTATTATTTAAAGGTTACAGCTTGGACATCAAACAATCCTGATTATTGTACAATTTATGAAGTTGACGATTGGGAAATTACTAAAGACGATGTTGATGTTTTACATTGGAAATATCCAATTGGTC GTGGTAGTTTTGGTACTGTATATAAAGGTGT ]




>consensus_7951#0
TGCGGACGACCCTAGAGGATCCCCTAATCATACATTATATATTGCGTTATAGACCAAGAA
ATCATGACAGTCACACAGATAATTATTCATTTTCAGACATGTCTGTACCATGGTTAACAA
ATTGTGTATCACTAAGTCATTGGGCAACAGTCAAACCAGAACAGAAATCATTGACTTCAA
GTTTATTTACGGATTTTAATAAAAAGATAATATCACCAAGTGAACGTGGTTCTAATGGTG
ATAGTAATACTACTAAAGGCGGAATCTTAATCAAAGATCTGTCCCCAGGTAGCTATGAAT
TCCAAATCTTAGCCATTTCCCTTGCCGGTCGTGGAGAATGGAGTCCTACTGAAATTTTCA
ATATTCCATTCTATACAGATTATAATGGCGTAGTAAACCAAAGAAAACTTGCAAATATTT
GCACAATCACTGTAGGTGCATTTTCGTTGCTCTGTTTCATTTTCGGGATTATTTGGTACA
AAGCACGTCGTTATTATTTAAAGGTTACAGCTTGGACATCAAACAATCCTGATTATTGTA
CAATTTATGAAGTTGACGATTGGGAAATTACTAAAGACGATGTTGATGTTTTACATTGGA
AATATCCAATTGGTCGGGGGAAGTTTTGGTCTGGATATAAAGGTGTG

consensusID : consensus_7951#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 588
fasta sequence

                              [TTGAAATACAAGCTTGTTTAGAGTACGATTCAATTTCTCATGAAAAACCATTAAAAGCAAAATGTAACTATCCACCACCTTGGTTTAATAAGGAATCTGGAATTATTGTTCATCTTGATCAACTTCAACATCAATGGGCAGCTTGTGAGTATGAACTATGCAGTCCAAGATCTACCGTAATAAATCGTGTAAATCCTCATGTTGAATCTGATAACATTCCTGTATCTTCAATTTATGCATCCTCTAATGGTCCGGGCAGTATACGTATTACATGGTCTAGTCCTATTAAACCGAATGGTTTAATCATACATTATATATTGCGTTATAGACCAAGAAATCATGACAGTCACACAGATAATTATTCATTTTCAGACATGTCTGTACCATGGTTAACAAATTGTGTATCACTAAGTCATTGGGCAACAGTCAAACCAGAACAGAAATCATTGACTTCAAGTTTATTTACGGATTTTAATAAAAAGATAGTATCACGAAGTGAACGTGGTTCTAATGGTGATAGTAATACTACTAAAGGCGGGATCTTAATCAAAGATCTGTCCCCAGGTAGCTATGAATTCCAAATCTTAA]

[+] EMBL CD167036             [TTGAAATACAAGCTTGTTTAGAGTACGATTCAATTTCTCATGAAAAACCATTAAAAGCAAAATGTAACTATCCACCACCTTGGTTTAATAAGGAATCTGGAATTATTGTTCATCTTGATCAACTTCAACATCAATGGGCAGCTTGTGAGTATGAACTATGCAGTCCAAGATCTACCGTAATAAATCGTGTAAATCCTCATGTTGAATCTGATAACATTCCTGTATCTTCAATTTATGCATCCTCTAATGGTCCGGGCAGTATACGTATTACATGGTCTAGTCCTATTAAACCGAATGGTTTAATCATACATTATATATTGCGTTATAGACCAAGAAATCATGACAGTCGCACAGATAATTATTCATTTTCAGACATGTCTGTACCATGGTTAACAAATTGCGTATCACTAAGTCATTGGGCAACAGTCAAACCAGAACAGAAATCATTGACTTCAAGTTTATTTACGGATTTTAATAAAAAGATAGTATCACGAAGTGAACGTGGTTCTAATGGTGGTAGTAATACTACTAAAGGCGGGATCTTAATCAAAGATCTGTCCCCAGGTAGCTATGAATTCCAAATCTTAA]
[-] EMBL CD065037             [ TGAAATACAAGCTTGTTTAGAGTACGATTCAATTTCTCATGAAAAACCATTAAAAGCAAAATGTAACTATCCACCACCTTGGTTTAATAAGAAATCTGGAATTATTGTTCATCTTGATCAACTTCAACATCAATGGGCAGCCTGTGAGTATGAACTATGCAGTCCAAGATCTACCGTAATAAATCGTGTAAATCCTCATGTTGAATCTGATAACATTCCTGTATCTTCAATTTATGCATCCTCTAATGGTCCGGGCAGTATACGTATTACATGGTCTAGTCCTATTAAACCGAATGGTTTAATCATACATTATATATTGCGTTATAGACCAAGAAATCATGACAGTCACACAGATAATTATTCATTTTCAGACATGTCTGTACCATGGTTAACAAATTGTGTATCACTAAGTCATTGGGCAACAGTCAAACCAGAACAGAAATCATTGACTTCAAGTTTATTTACGGATTTTAATAAAAAGATAGTATCACGAAGTGAACGTGGTTCTAATGGTGATAGTAATACTACTAAAGGCGGGATCTTAATCAAAG                                    ]
[-] EMBL CD189488             [                                                                                                                                                                                                                                                                          ATTACATGGTCTAGTCCTATTAAACCGAATGGTTTAATCATACATTATATATTGCGTTATAGACCAAGAAATCATGACAGTCACACAGATAATTATTCATTTTCAGACATGTCTGTACCATGGTTAACAAATTGTGTATCACTAAGTCATTGGGCAACAGTCAAACCAGAACAGAAATCATTGACTTCAAGTTTATTTACGGATTTTAATAAAAAGATAGTATCGCGAAGTGAACGTGGTTCTAATGGTGATAGTAATACTACTAAAGGCGGGATCTTAATCAAA                                     ]
[-] EMBL CD065014             [                                                                                                                                                                                                                                                                                                                                                                                          CTGTACCATGGTTAACAAAGTGTGTATCAGTAAGTCATTGGGCAACAGTCAAACCAGAACAGAAATCATTGACTTCAAGTTTATTTACGGATTTTAATAAAAAGATAGTATCACGAAGTGAACGTGGTTCTAATGGTGATAGTAATACTAGTAAAGGCGGGATCTTAATCAAAGATAAGTC                             ]




>consensus_7951#1
TTGAAATACAAGCTTGTTTAGAGTACGATTCAATTTCTCATGAAAAACCATTAAAAGCAA
AATGTAACTATCCACCACCTTGGTTTAATAAGGAATCTGGAATTATTGTTCATCTTGATC
AACTTCAACATCAATGGGCAGCTTGTGAGTATGAACTATGCAGTCCAAGATCTACCGTAA
TAAATCGTGTAAATCCTCATGTTGAATCTGATAACATTCCTGTATCTTCAATTTATGCAT
CCTCTAATGGTCCGGGCAGTATACGTATTACATGGTCTAGTCCTATTAAACCGAATGGTT
TAATCATACATTATATATTGCGTTATAGACCAAGAAATCATGACAGTCACACAGATAATT
ATTCATTTTCAGACATGTCTGTACCATGGTTAACAAATTGTGTATCACTAAGTCATTGGG
CAACAGTCAAACCAGAACAGAAATCATTGACTTCAAGTTTATTTACGGATTTTAATAAAA
AGATAGTATCACGAAGTGAACGTGGTTCTAATGGTGATAGTAATACTACTAAAGGCGGGA
TCTTAATCAAAGATCTGTCCCCAGGTAGCTATGAATTCCAAATCTTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7951#0      ------------------------------------------------------------
consensus_7951#1      TTGAAATACAAGCTTGTTTAGAGTACGATTCAATTTCTCATGAAAAACCATTAAAAGCAA 60
                                                                                  

consensus_7951#0      ------------------------------------------------------------
consensus_7951#1      AATGTAACTATCCACCACCTTGGTTTAATAAGGAATCTGGAATTATTGTTCATCTTGATC 120
                                                                                  

consensus_7951#0      ------------------------------------------------------------
consensus_7951#1      AACTTCAACATCAATGGGCAGCTTGTGAGTATGAACTATGCAGTCCAAGATCTACCGTAA 180
                                                                                  

consensus_7951#0      ------------------------------------------------------------
consensus_7951#1      TAAATCGTGTAAATCCTCATGTTGAATCTGATAACATTCCTGTATCTTCAATTTATGCAT 240
                                                                                  

consensus_7951#0      ------------------------------------TGCGGACGACCCTAGAGGATCCCC 24
consensus_7951#1      CCTCTAATGGTCCGGGCAGTATACGTATTACATGGTCTAGTCCTATTAAACCGAATGGTT 300
                                                             *  * *    *  * **    

consensus_7951#0      TAATCATACATTATATATTGCGTTATAGACCAAGAAATCATGACAGTCACACAGATAATT 84
consensus_7951#1      TAATCATACATTATATATTGCGTTATAGACCAAGAAATCATGACAGTCACACAGATAATT 360
                      ************************************************************

consensus_7951#0      ATTCATTTTCAGACATGTCTGTACCATGGTTAACAAATTGTGTATCACTAAGTCATTGGG 144
consensus_7951#1      ATTCATTTTCAGACATGTCTGTACCATGGTTAACAAATTGTGTATCACTAAGTCATTGGG 420
                      ************************************************************

consensus_7951#0      CAACAGTCAAACCAGAACAGAAATCATTGACTTCAAGTTTATTTACGGATTTTAATAAAA 204
consensus_7951#1      CAACAGTCAAACCAGAACAGAAATCATTGACTTCAAGTTTATTTACGGATTTTAATAAAA 480
                      ************************************************************

consensus_7951#0      AGATAATATCACCAAGTGAACGTGGTTCTAATGGTGATAGTAATACTACTAAAGGCGGAA 264
consensus_7951#1      AGATAGTATCACGAAGTGAACGTGGTTCTAATGGTGATAGTAATACTACTAAAGGCGGGA 540
                      ***** ****** ********************************************* *

consensus_7951#0      TCTTAATCAAAGATCTGTCCCCAGGTAGCTATGAATTCCAAATCTTAGCCATTTCCCTTG 324
consensus_7951#1      TCTTAATCAAAGATCTGTCCCCAGGTAGCTATGAATTCCAAATCTTAA------------ 588
                      ***********************************************             

consensus_7951#0      CCGGTCGTGGAGAATGGAGTCCTACTGAAATTTTCAATATTCCATTCTATACAGATTATA 384
consensus_7951#1      ------------------------------------------------------------
                                                                                  

consensus_7951#0      ATGGCGTAGTAAACCAAAGAAAACTTGCAAATATTTGCACAATCACTGTAGGTGCATTTT 444
consensus_7951#1      ------------------------------------------------------------
                                                                                  

consensus_7951#0      CGTTGCTCTGTTTCATTTTCGGGATTATTTGGTACAAAGCACGTCGTTATTATTTAAAGG 504
consensus_7951#1      ------------------------------------------------------------
                                                                                  

consensus_7951#0      TTACAGCTTGGACATCAAACAATCCTGATTATTGTACAATTTATGAAGTTGACGATTGGG 564
consensus_7951#1      ------------------------------------------------------------
                                                                                  

consensus_7951#0      AAATTACTAAAGACGATGTTGATGTTTTACATTGGAAATATCCAATTGGTCGGGGGAAGT 624
consensus_7951#1      ------------------------------------------------------------
                                                                                  

consensus_7951#0      TTTGGTCTGGATATAAAGGTGTG 647
consensus_7951#1      -----------------------