These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 749 fasta sequence [AAAGAGATCATTAATAATGGGATCATTTGCTTATTTGTTTAACTATTCTAGAGATTAATTAAATTACCTCTTCGTCATTATAT-TGTTTCTATGATGATTATCTCTTTTTTNTATTGCAGAAACGGATTTTTTACTGCTCCTTTTTGTCTTTGTTTTTAAAGTTTCTTCATACTGGTGGTTTACTCATTATATTCCTACTTTATTGACTTTTAGGAGAGATTACATAACAATGCTTCCTCTTTTCATAATGATGATTATGTTTGATTAGTGGACTGGTATGTGTATGATTTTTACTGAGTATTGTCACTATCTTGATGGGAACTGTTCACCTAAGCTGGTATATCACAAAATACCAGCGACAACTGGAACTTGTACAATTAAATATCTATATATAGTTATTTCTTTCATTGTTTATGAAACAAACATTCACCGTACTGATCGTCCTTTGTTTAAAATTGCGCCGACATGCAGCTGTGAACAATCCAATTGATAATGTATTCTCAAATCGCTTGATATTCACTGTCGTTGTTGTTTTTATAATGAACAGTAATAAATACTTATCGTGATGTATGTGTGATATGTACGAAACTAATGTGCTTCTTTTGTCGATATGTATT-GTCTTATAAATACTGGTTTGACTTGTATAAATTGCCTGACAGAATAACGTCTTGAAGTGTGACTCAGGTTCCTTATTATTTGATGAACTAATTGATGTATGATTATGCTTATCTAATGCTTCCTAGTAACTA] [+] EMBL CD091953 [AAAGAGATCATTAATAATGGGATCATTTGCTTATTTGTTTAACTATTCTAGAGATTAATTAAATTACCTCTTCGTCATTATAT TGTTTCTATGATGATTATCTCTTTTTTTTATTGCAGAAACGGATTTTTTACTGCTCCTTTTTGTCTTTGTTTTTAAAGTTTCTTCATACTGGTGGTTTACTCATTATATTCCTACTTTATTGACTTTTAGGAGAGATTACATAACAATGCTTCCTCTTTTCATAATGATGATTATGTTTGATTAGTGGACTGGTATGTGTATGATTTTTACTGAGTATTGTCACTATCTTGATGGGAACTGTTCACCTAAGCTGGTATATCACAAAATACCAGCGACAACTGGAACTTGTACAATTAAATATCTATATATAGTTATTTCTTTCATTGTTTATGAAACAAACATTCACCGTACTGATCGTCCTTTGTTTAAAATTGCGCCGACATGCAGCTGTGAACAATCCAATTGATAATGTATTCTCAAATCGCTTGATATTCACTGTCGTTGTTGTTTTTATAATGAACAGTAATAAATACTTATCGTGATGTATGTGTGATATGTACGAAACTAATGTGCTTCTTTTGTCGATATGTATTGGNCTTAT AATACTG ] [-] EMBL CD091989 [ CGTCA TATATGGGTTTCTATGATGATTATCTCTTTTTTNTATGCCAGAAACGGATTTTTTACTGCTCCTTTTTGTCTTTGTTTTTAAAGTTTCTTCATACTGGTGGTTTACTCATTATATTCCTACTTTATTGACTTTTAGGAGAGATTACATAACAATGCTTCCTCCTTTCATAATGATGATTATGTTTGATTAGTGGACTGGTATGTGTATGACTTTTACTGAGTATTGTCACTATCTTGATGGGAACTGTTCACCTAAGCTGGTATATCACAAAATACCAGCGACAACTGGAACTTGTACAATTAAATATCTATATATAGTTATTTCTTTCATTGTTTATGAAACAAACATTCACCGTACTGATCGTCCTTTGTTTAAAATTGCGCCGACATGCAGCTGTGAACAATCCAATTGATAATGTATTCTCAAATCGCTTGATATTCACTGTCGTTGTTGTTTTTATAATGAACAGTAATAAATACTTATCGTGATGTATGTGTGATATGTACGAAACTAATGTGCTTCTTTTGTCGATATGTATT GTCTTATAAATACTGGTTTGACTTGTATAAATTGCCTGACAGAATAACGTCTT ] [-] EMBL CD091966 [ TTATCTCTNTTTTNTATTGCAGAAACGGATTTTTTACTGCTCCTTTTTGTCTTTGTTTCTAAAGTTTCTTCATACTGGTGGTTTACTCATTATATTCCTACTTTATTGACTTTTAGGAGAGATTACATAACAATGCTTCCTCTTTTCATAATGATGATTATGTTTGATTAGTGGACTGGTATGTGTATGATTTTTACTGAGTATTGTCACTATCTTGATGGGAACTGTTCACCTAAGCTGGTATATCACAAAATACCAGCGACAACTGGAACTTGTACAATTAAATATCTATATATAGTTATTTCTTTCATTGTTTATGAAACAAACATTCACCGTACTGATCGTCCTTTGTTTAAAATTGCGCCGACATGCAGCTGTGAACAATCCAATTGATAATGTGTTCTCAAATCGCTTGATATTCACTGTCGTTGTTGTTTTTATAATGAACAGTAATAAATACTTATCGTGATGTATGTGTGATATGTACGAAACTAATGTGCTTCTTTTGTCGATATGTATT GTCTTATAAATACTGGTTTGACTTGTATAAATTGCCTGACAGAATAACGTCTT ] [-] EMBL CD195164 [ TCTTGATGGGAACTGTTCACCTAAGCTGGTATATCACAAAATACCAGCGACAACTGGAACTTGTACAATTAAATATCTATATATAGTTATTTCTTTCATTGTTTATGAAACAAACATTCACCGTACTGATCGTCCTTTGTTTAAAATTGCGCCGACATGCAGCTGTGAACAATCCAATTGATAATGTATTCTCAAATCGCTTGATATTCACTGTCGTTGTTGTTTTTATAATGAACAGTAATAAATACTTATCGTGATGTATGTGTGATATGTACGAAACTAATGTGCTTCTTTTGTCGATATGTATT GTCTTATAAATACTGGTTTGACTTGTATAAATTGCCCGACAGAATAACGTCTTGAAGTGTGACTCAGGTTCCTTATTATTTGATGAACTAATTGATGTATGATTATGCTTATCTAATGCTTCCTAGTAACTA] consensusID : consensus_7954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [AGAACCATCATTCATAATGGAATCATTCGCTTATTAGTTTAACTAGTCTACATATTAACTCAATTACCTCTTCTTCATTATATTGTCTCTATGATGATTATCTCTTTTCTTTATCGCATAAACGGATTTTTTACTGCACCTTTTTGACTTTGTTATTAAAGTCTCTTCATACTGGTGGTTAACTCATTATATTCCTACTTTATTGACTTTTAGGAGAGATTACATAACAATGCTGCCTATTTTCATAATGATGATTATGTTTGATTACTGGACTGGTCTGTGTATGATTCTGACTGAGTATTGCCACTATCTCGATGGCAACTGTTCACCTAACCTGGTGTATCTCCAAATACCAGCGACAACTGGAACTTGTGCGATTACATATCTATATATAGATATTTCTTACATTGCTTATGACACAAACATGCACCGTACTGATCGTCCTTTGTTTAAAATTGCGCCGACATGCAGCTGTGAACAATCCAATTGATAATGTATTCTCAAATCGCTTGATATTCACTGAT] [+] EMBL CD091954 [AGAACCATCATTCATAATGGAATCATTCGCTTATTAGTTTAACTAGTCTACATATTAACTCAATTACCTCTTCTTCATTATATTGTCTCTATGATGATTATCTCTTTTCTTTATCGCATAAACGGATTTTTTACTGCACCTTTTTGACTTTGTTATTAAAGTCTCTTCATACTGGTGGTTAACTCATTATATTCCTACTTTATTGACTTTTAGGAGAGATTACATAACAATGCTGCCTATTTTCATAATGATGATTATGTTTGATTACTGGACTGGTCTGTGTATGATTCTGACTGAGTATTGCCACTATCTCGATGGCAACTGTTCACCTAACCTGGTGTATCTCCAAATACCAGCGACAACTGGAACTTGTGCGATTACATATCTATATATAGATATTTCTTACATTGCTTATGACACAAACATGCACCGTACTGATCGTCCTTTGTTTAAAATTGCGCCGACATGCAGCTGTGAACAATCCAATTGATAATGTATTCTCAAATCGCTTGATATTCACTGAT] consensusID : consensus_7954#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence [CTTTGAGTTTTTTTTTTTTTTTTTTAATGATTAGAACATTTTTATTTAGCACGAATTAACAAAAAAAGATGAAAGGGACTTGATTGCACAGTAAAATGGAACTTTCCAAAAACATCCCTAAACCATCTGGTAACAAATAACTACCTGTTACTCATCTTTCGGGGTATGTTAGAGTGATTACTATTAGTTACTAGGAAGCATTAGATAAGCATAATCATACATCAATCAATTAGTTCAT] [+] EMBL AA566155 [CTTTGAGTTTTTTTTTTTTTTTTTTAATGATTAGAACATTTTTATTTAGCACGAATTAACAAAAAAAGATGAAAGGGACTTGATTGCACAGTAAAATGGAACTTTCCAAAAACATCCCTAAACCATCTGGTAACAAATAACTACCTGTTACTCATCTTTCGGGGTATGTTAGAGTGATTACTATTAGTTACTAGGAAGCATTAGATAAGCATAATCATACATCAATCAATTAGTTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7954#0 AAAGAGATCATTAATAATGGGATCATTTGCTTATTTGTTTAACTATTCTAGAGATTAATT 60 consensus_7954#1 AGAACCATCATTCATAATGGAATCATTCGCTTATTAGTTTAACTAGTCTACATATTAACT 60 consensus_7954#2 ------------------------------------------------------------ consensus_7954#0 AAATTACCTCTTCGTCATTATATTGTTTCTATGATGATTATCTCTTTTTTNTATTGCAGA 120 consensus_7954#1 CAATTACCTCTTCTTCATTATATTGTCTCTATGATGATTATCTCTTTTCTTTATCGCATA 120 consensus_7954#2 ------------------------------------------------------------ consensus_7954#0 AACGGATTTTTTACTGCTCCTTTTTGTCTTTGTTTTTAAAGTTTCTTCATACTGGTGGTT 180 consensus_7954#1 AACGGATTTTTTACTGCACCTTTTTGACTTTGTTATTAAAGTCTCTTCATACTGGTGGTT 180 consensus_7954#2 ------------------------------------------------------------ consensus_7954#0 TACTCATTATATTCCTACTTTATTGACTTTTAGGAGAGATTACATAACAATGCTTCCTCT 240 consensus_7954#1 AACTCATTATATTCCTACTTTATTGACTTTTAGGAGAGATTACATAACAATGCTGCCTAT 240 consensus_7954#2 ------------------------------------------------------------ consensus_7954#0 TTTCATAATGATGATTATGTTTGATTAGTGGACTGGTATGTGTATGATTTTTACTGAGTA 300 consensus_7954#1 TTTCATAATGATGATTATGTTTGATTACTGGACTGGTCTGTGTATGATTCTGACTGAGTA 300 consensus_7954#2 -----------------------------------------------CTTTGAGTTTTTT 13 * * * * * consensus_7954#0 TTGTCACTATCT--TGATGGGAAC-TGTTCACCTAAGCTGGTATATCACAAAATACCAGC 357 consensus_7954#1 TTGCCACTATCT--CGATGGCAAC-TGTTCACCTAACCTGGTGTATCTCCAAATACCAGC 357 consensus_7954#2 TTTTTTTTTTTTAATGATTAGAACATTTTTATTTAGCACGAATTAACAAAAAAAGATGAA 73 ** * * * *** *** * ** * ** * ** * *** consensus_7954#0 GACAACTGGAACTTGTACAATTAAAT--ATCTATATATAGTTATTTCTTTCATTGTTTAT 415 consensus_7954#1 GACAACTGGAACTTGTGCGATTACAT--ATCTATATATAGATATTTCTTACATTGCTTAT 415 consensus_7954#2 AGGGACTTGA--TTGCACAGTAAAATGGAACTTTCCAAAAACATCCCTAAACCATCTGGT 131 *** ** *** * * * ** * ** * * * ** ** * * consensus_7954#0 GAAACAAACATTCACCGTACTGATCGTCCTTTGTTTAAAATTGCGCCGACATGCAGCTGT 475 consensus_7954#1 GACACAAACATGCACCGTACTGATCGTCCTTTGTTTAAAATTGCGCCGACATGCAGCTGT 475 consensus_7954#2 AACAAATAACTACCTGTTACTCATCTTTCGGGGTATGTTAGAGTGATTACTATTAGTTAC 191 * * * * * * **** *** * * ** * * * * ** ** * consensus_7954#0 GAACAATCCAATTGATAA-TGTATTCTCAAATCGCTTGAT--ATTCACTGTCGTTGTTGT 532 consensus_7954#1 GAACAATCCAATTGATAA-TGTATTCTCAAATCGCTTGAT--ATTCACTGAT-------- 524 consensus_7954#2 TAGGAAGC-ATTAGATAAGCATAATCATACATCAATCAATTAGTTCAT------------ 238 * ** * * * ***** ** ** * *** * ** **** consensus_7954#0 TTTTATAATGAACAGTAATAAATACTTATCGTGATGTATGTGTGATATGTACGAAACTAA 592 consensus_7954#1 ------------------------------------------------------------ consensus_7954#2 ------------------------------------------------------------ consensus_7954#0 TGTGCTTCTTTTGTCGATATGTATTGTCTTATAAATACTGGTTTGACTTGTATAAATTGC 652 consensus_7954#1 ------------------------------------------------------------ consensus_7954#2 ------------------------------------------------------------ consensus_7954#0 CTGACAGAATAACGTCTTGAAGTGTGACTCAGGTTCCTTATTATTTGATGAACTAATTGA 712 consensus_7954#1 ------------------------------------------------------------ consensus_7954#2 ------------------------------------------------------------ consensus_7954#0 TGTATGATTATGCTTATCTAATGCTTCCTAGTAACTA 749 consensus_7954#1 ------------------------------------- consensus_7954#2 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||