These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7957#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1128 fasta sequence [CGGGCCAANAATTCGGCACGAGGACTATCATCAGGTCATGTTTAAATTTCTCTTCGATAAGCAGATCATTAAGCAGAATAGCATTCTAATGTATTTTAAGTAATATTTCTCTAAGTGCTGAATTTAATCTTCAGACTAATTCTGCCAGCATATGGGACTTGGAACCTATTACTACATTCCTAGTGCCAGTACATTACCAACTATGGCACTGGATACATCTAAATGAAAGTATTATTCCAAGCAGCGAAAGTCGATTAAGTTCTTTACCGACTACCAAATCAAGTGATCCACC-TTTTTTACGATTGGCATGGATTCGATTTCATGTGTTAAACGTTGATCAAGTCGAATTTATTAGTACATCCTCAAGTAAAGCAGTGACTTTTGGACATTTTTCCAATGAAGTAGCTGAATGTGTAATCAAAGCGCTTCGACCTTACCTTGGTCATCTTCTAAACAATAATCGTACACAAATCACACTGCGCATTCTGTTACAACCACCAGATCAGGTTGGCTATCGGATGGGTGCTTCGTGTCAGGAAGTATACACACTTCACAATCAACTAGATTCATCGAATGATCTTGAAAATACAAGTTGTGAGAATTGTGAAGAAACGTATGCTGACGCACTAGACGATATATTGTTGCCTGTTTTATCTTCATGGACTAGTTGCTTAAAAATTGTCGATCCAAATATGAAAGAATTCGAACAACGCCGCTCACCGGGTACTTCTAATTCTTGTTATCATCCAAATGAAGTAATTCAGATGGAATTTGATTTTTGCATTTTAAACTGAGGTTATGTCAGCTAGGAAAGTATGTTAGATATAACATTTGTATCAAACAATCTGTTCCCAATTATTCGCATCTTTCCTTCTTATTGTTCGTTCCGCTTTTTTGTTATTTTGTTTAATTGATCCCTCAATTAGGTGACCTCGAGTTAGTAGCATATTTTTCGACCAGAATTTATTTGCTACTCTTTTAAGCCAGTGTTTCCTATTTTCTCTGTTTATTTACGAAGTCATTTACATGTTGACCTCCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTTCTTATTTTTGTTGTTAACTAATTTCGATTTGAATTTCCATGAAATAGTT] [+] EMBL CD083140 [CGGGCCAANAATTCGGCACGAGGACTATCATCAGGTCATGTTTAAATTTCTCTTCGATAAGCAGATCATTAAGCAGAATAGCATTCTAATGTATTTTAAGTAATATTTCTCTAAGTGCTGAATTTAATCTTCAGACTAATTCTGCCAGCATATGGGACTTGGAACCTATTACTACATTCCTAGTGCCAGTACATTACCAACTATGGCACTGGATACATCTAAATGAAAGTATTATTCCAAGCAGCGAAAGTCGATTAAGTTCTTTACCGACTACCAAATCAAGTGATCCACC TTTTTTACGATTGGCATGGATTCGATTTCATGTGTTAAACGTTGATCAAGTCGAATTTATTAGTACATCCTCAAGTAAAGCAGTGACTTTTGGACATTTTTCCAATGAAGTAGCTGAATGTGTAATCAAAGCGCTTCGACCTTACCTTGGTCATCTTCTAAACAATAATCGTACACAAATCACACTGCGCATTCTGTTACAACCACCAGATCAGGTTGGCTATCGGATGGGTGCTTCGTGTCAGGAAGTATACACACTTCACAATCAACTAGATTCATCGAATGATCTTGAAAATACAAGTTGTGAGAATTGTGAAGAAACGTATGCTGACGCACTAGACGATATATTGTTGCCTGTTTTATCTT ] [+] EMBL CD083093 [ AACCTATTACT CATTCCTAGTGCCAGTACATTACCAACTATGGCACTGGATACATCTAAATGAAAGTATTATTCCAAGCAGCGAAAGTCGATTAAGTTCTTTACCGACTACCAAATCAAGTGATCCACCTTTTTTTACGATTGGCATGGATTCGATTTCATGTGTTAAACGTTGATCAAGTCGAATTTATTAGTACATCCTCAAGTAAAGCAGTGACTTTTGGACATTTTTCCAATGAAGTAGCTGAATGTGTAATCAAAGCGCTTCGACCTTACCTTGGTCATCTTCTAAACAATAATCGTACACAAATCACACTGCGCATTCTGTTACAACCACCAGATCAGGTTGGCTATCGGATGGGTGCTTCGTGTCAGGAAGTATACACACTTCACAATCAACTAGATTCATCGAATGATCTTGAAAATACAAGTTGTGAGAATTGTGAAGAAACGTATGCTGACGCACTAGACGATATATTGTTGCCTGTTTTATCTTCATGGACTAGTTGCTTAAAAATTGTCGATCCAAATATGAAAGAATTCGAACAACGCCGCTCACCGGGTACTTCTAATTCTT ] [+] EMBL AW017169 [ TCCAAGCAGCGAAAGTCGATTAAGTTCTTTACCGACTACCAAATCAAGTGATCCACC TTTTTTACGATTGGCATGGATTCGATTTCATGTGTTAAACGTTGATCAAGTCGAATTTATTAGTACATCCTCAAGTAAAGCAGTGACTTTTGGACATTTTTCCAATGAAGTAGCTGAATGTGTAATCAAAGCGCTTCGACCTTACCTTGGTCATCTTCTAAACAATAATCGTACACAAATCACACTGCGCATTCTGTTACAACCACCAGATCAGGTTGGCTATCGGATGGGTGCTTCGTGTCAGGAAGTATACACACTTCACAATCAACTAGATTCATCGAATGATCTTGAAAATACAAGTTGTGAGAATTGTGAAGAAACGTATGCTGACGCACTAGACGATATATTGTTGCCTGTTTTATCTTCATGGACTAGTTGCTTAAAAATTGTCGATCCAAATATGAAAGAATTCGAACAACGCCGCTCACCGGGTACTTCTAATTCTTGGTATCATCCAAATGAAGTAATTCAGATGGAATTTGATTNTTGCATTTTAAACTGAGGTTATGTCAGCTAGGAAAGTATGTTAGATATAACATTTGTATCAAACAATCTGTTCCCAATTATTCGC ] [-] EMBL CD076667 [ ACTAGATTCATCGAATGATCTTGAAAATACAAGTTGTGAGAATTGTGAAGAAACGTATGCTGACGCACTAGACGATATATTGTTGCCTGTTTTATCTTCATGGACTAGTTGCTTAAAAATTGTCGATCCAAATATGAAAGAATTCGAACAACGCCGCTCACCGGGTACTTCTAATTCTTGTTATCATCCAAATGAAGTAATTCAGATGGAATTTGATTTTTGCATTTTAAACTGAGGTTATGTCAGCTAGGAAAGTATGTTAGATATAACATTTGTATCAAACAATCTGTTCCCAATTATTCGCATCTTTCCTTCTTATTGTTCGTTCCGCTTTTTTGTTATTTTGTTTAATTGATCCCTCAATTAGGTGACCTCGAGTTAGTAGCATATTTTTCGACCAGAATTTATTTGCTACTCTTTTAAGCCAGTGTTTCCTATTTTCTCTGTTTATTTACGAAGTCATTTACATGTTGACCTCCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTTCTTATTTTTGTTGTTAACTAATTTCGATTTGAATTTCCATGAAATAGTT] [-] EMBL CD076712 [ TACAAGTTGTGAGAATTGTGAAGAAACGTATGCTGACGCACTAGACGATATATTGTTGCCTGTTTTATCTTCATGGACTAGTTGCTTAAAAATTGTCGATCCAAATATGAAAGAATTCGAACAACGCCGCTCACCGGGTACTTCTAATTCTTGTTATCATCCAAATGAAGTAATTCAGATGGAATTTGATTTTTGCATTTTAAACTGAGGTTATGTCAGCTAGGAAAGTATGTTAGATATAACATTTGTATCAAACAATCTGTTCCCAATTATTCGCATCTTTCCTTCTTATTGTTCGTTCCGCTTTTTTGTTATTTTGTTTAATTGATCCCTCAATTAGGTGACCTCGAGTTAGTAGCATATTTTTCGACCAGAATTTATTTGCTACTCTTTTAAGCCAGTGTTTCCTATTTTCTCTGTTTATTTACGAAGTCATTTACATGTTGACCTCCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTTCTTATTTTTGTTGTTAACTAATTTCGATTTGAATTTCCATGAAATAGTT] consensusID : consensus_7957#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [ACGGGTACTCAAATCTTGGTACCACCCAAATGAAGTAATCCAGAGGAATTTAATTTTGCATTTAAACTAAGGTTATGCCACTAGGAAAGTATGTAAAAATAACATTGTATCAAAAAATCTGTCCBAATTATCGCACTCCCTTCTAATTGTCCGTCCCGCTTTTTTGTAATTTGTTAATTGACCCCTCAATAGGTGGCCCCGAGTTAGTAACATATTTACGACAAGAATTAATTTGCTACTCTTCTAACCAAGTGTTCCCTATTTCTCTGTTTATTTTCAAAGGAATTTACCTGTTGACCRCCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTCCTTATTTTTGTTGTTAACTAATTTCGATTTGAATTTCCATGAAATAGTT] [-] EMBL SMAA28904 [ACGGGTACTCAAATCTTGGTACCACCCAAATGAAGTAATCCAGAGGAATTTAATTTTGCATTTAAACTAAGGTTATGCCACTAGGAAAGTATGTAAAAATAACATTGTATCAAAAAATCTGTCCBAATTATCGCACTCCCTTCTAATTGTCCGTCCCGCTTTTTTGTAATTTGTTAATTGACCCCTCAATAGGTGGCCCCGAGTTAGTAACATATTTACGACAAGAATTAATTTGCTACTCTTCTAACCAAGTGTTCCCTATTTCTCTGTTTATTTTCAAAGGAATTTACCTGTTGACCRCCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTCCTTATTTTTGTTGTTAACTAATTTCGATTTGAATTTCCATGAAATAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7957#0 CGGGCCAANAATTCGGCACGAGGACTATCATCAGGTCATGTTTAAATTTCTCTTCGATAA 60 consensus_7957#1 ------------------------------------------------------------ consensus_7957#0 GCAGATCATTAAGCAGAATAGCATTCTAATGTATTTTAAGTAATATTTCTCTAAGTGCTG 120 consensus_7957#1 ------------------------------------------------------------ consensus_7957#0 AATTTAATCTTCAGACTAATTCTGCCAGCATATGGGACTTGGAACCTATTACTACATTCC 180 consensus_7957#1 ------------------------------------------------------------ consensus_7957#0 TAGTGCCAGTACATTACCAACTATGGCACTGGATACATCTAAATGAAAGTATTATTCCAA 240 consensus_7957#1 ------------------------------------------------------------ consensus_7957#0 GCAGCGAAAGTCGATTAAGTTCTTTACCGACTACCAAATCAAGTGATCCACCTTTTTTAC 300 consensus_7957#1 ------------------------------------------------------------ consensus_7957#0 GATTGGCATGGATTCGATTTCATGTGTTAAACGTTGATCAAGTCGAATTTATTAGTACAT 360 consensus_7957#1 ------------------------------------------------------------ consensus_7957#0 CCTCAAGTAAAGCAGTGACTTTTGGACATTTTTCCAATGAAGTAGCTGAATGTGTAATCA 420 consensus_7957#1 ------------------------------------------------------------ consensus_7957#0 AAGCGCTTCGACCTTACCTTGGTCATCTTCTAAACAATAATCGTACACAAATCACACTGC 480 consensus_7957#1 ------------------------------------------------------------ consensus_7957#0 GCATTCTGTTACAACCACCAGATCAGGTTGGCTATCGGATGGGTGCTTCGTGTCAGGAAG 540 consensus_7957#1 ------------------------------------------------------------ consensus_7957#0 TATACACACTTCACAATCAACTAGATTCATCGAATGATCTTGAAAATACAAGTTGTGAGA 600 consensus_7957#1 ------------------------------------------------------------ consensus_7957#0 ATTGTGAAGAAACGTATGCTGACGCACTAGACGATATATTGTTGCCTGTTTTATCTTCAT 660 consensus_7957#1 ------------------------------------------------------------ consensus_7957#0 GGACTAGTTGCTTAAAAATTGTCGATCCAAATATGAAAGAATTCGAACAACGCCGCTCAC 720 consensus_7957#1 -----------------------------------------------------------A 1 consensus_7957#0 CGGGTACTTCTAATTCTTGTTATCATCCAAATGAAGTAATTCAGATGGAATTTGATTTTT 780 consensus_7957#1 CGGGTACTC--AAATCTTGGTACCACCCAAATGAAGTAATCCAGA-GGAATTTAATTTT- 57 ******** ** ***** ** ** ************** **** ******* ***** consensus_7957#0 GCATTTTAAACTGAGGTTATGTCAGCTAGGAAAGTATGTTAGATATAACATTTGTATCAA 840 consensus_7957#1 GCATTT-AAACTAAGGTTATGCCA-CTAGGAAAGTATGTAAAA-ATAACATT-GTATCAA 113 ****** ***** ******** ** ************** * * ******** ******* consensus_7957#0 ACAATCTGTTCCCAATTATTCGCATCTTTCCTTCTTATTGTTCGTTCCGCTTTTTTGTTA 900 consensus_7957#1 AAAATCTGT-CCBAATTAT-CGCAC--TCCCTTCTAATTGTCCGTCCCGCTTTTTTGTAA 169 * ******* ** ****** **** * ****** ***** *** ************ * consensus_7957#0 TTTTGTTTAATTGATCCCTCAATTAGGTGACCTCGAGTTAGTAGCATATTTTTCGACCAG 960 consensus_7957#1 TTTG--TTAATTGACCCCTCAAT-AGGTGGCCCCGAGTTAGTAACATATTTA-CGACAAG 225 *** ******** ******** ***** ** ********** ******* **** ** consensus_7957#0 AATTTATTTGCTACTCTTTTAAGCCAGTGTTTCCTATTTTCTCTGTTTATTTACGAAGTC 1020 consensus_7957#1 AATTAATTTGCTACTCTTCTAACCAAGTGTTCCCTATTT-CTCTGTTTATTTTCAAAGGA 284 **** ************* *** * ****** ******* ************ * *** consensus_7957#0 ATTTACATGTTGACCTCCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTTC 1080 consensus_7957#1 ATTTACCTGTTGACCRCCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTCC 344 ****** ******** ****************************************** * consensus_7957#0 TTATTTTTGTTGTTAACTAATTTCGATTTGAATTTCCATGAAATAGTT 1128 consensus_7957#1 TTATTTTTGTTGTTAACTAATTTCGATTTGAATTTCCATGAAATAGTT 392 ************************************************ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||