These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7959#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 577 fasta sequence [GGGAAGTAGGTGGTGCAGGGCCAGTGGGAGAAGCTGGGTCTCCAGGACAACAAGGTCTTCCCGGAGAACGAGGACTTCAGGGTCCACCAGGTCCTGGGGGAGAGCCAGGCCCACCAGGGCCTAGTGGTCCTTTAGGGATACCTGGACCAGACGGACCGAGTGGACCTAGAGGTGAAGTAGGTGATCCTGGTATAGATGGTGCGCCAGGGGGAAAAGGCGAAGATGGACAACCTGGACTGCCTGGACGACCTGGAAAGGATGGATCACCAGGAAGGCAAGGGAAGTCTGGACCACAAGGCCATA-AAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCACAGCTGGACAACCTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGACCTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTGGTGGACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACATATGGGGAGTGAAGGACCACCTGGACCTCCTGGGCCTCCAGCTATGAGTTA] [+] EMBL CD143223 [GGGAAGTAGGTGGTGCAGGGCCAGTGGGAGAAGCTGGGTCTCCAGGACAACAAGGTCTTCCCGGAGAACGAGGACTTCAGGGTCCACCAGGTCCTGGGGGAGAGCCAGGCCCACCAGGGCCTAGTGGTCCTTTAGGGATACCTGGACCAGACGGACCGAGTGGACCTAGAGGTGAAGTAGGTGATCCTGGTATAGATGGTGCGCCAGGGGGAAAAGGCGAAGATGGACAACCTGGACTGCCTGGACGACCTGGAAAGGATGGATCACCAGGAAGGCAAGGGAAGTCTGGACCACAAGGCCATANAAGG TGGACTGGCCCTCCA ] [-] EMBL CD141094 [ TACCTGGACCAGACGGACCGAGTGGACCTAGAGGTGAAGTAGGTGATCCTGGTATAGATGGTGCGCCAGGGGGAAAAGGCGAAGATGGACAACCTGGACTGCCTGGACGACCTGGAAAGGATGGATCACCAGGAAGGCAAGGGAAGTCTGGACCACAAGGCCATA AAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCACAGCTGGACAACCTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGACCTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTGGTGGACCT ] [+] EMBL CD137490 [ GGACCAGACGGACCGAGTGGACCTAGAGGTGAAGTAGGTGATCCTGGTATAGATGGTGCGCCAGGGGGAAAAGGCGAAGATGGACAACCTGGACTGCCTGGACGACCTGGAAAGGATGGATCACCAGGAAGGCAAGGGAAGTCTGGACCACAAGGCCATA AAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCACAGCTGGACAACCTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGACCTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTGGTGGACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACATATGGGGAGTGAAGGACCACCTGGACCTCCTGGGCCTCCAGCTATGAGTTA] consensusID : consensus_7959#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 414 fasta sequence [TGGTGATCCATCCTTTCCAGGTCGTCCAGGCAGTCCAGGTTGTCCATCTTCGCCTTTTCCCCCTGGCGCACCATCTATACCAGGATCACCTACTTCACCTCTAGGTCCACTCGGTCCGTCTGGTCCACAAGGCCATAAAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCACAGCTGGACAACCTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGACCTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTGGTGGACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACATATGGGGAGTGAAGGACCACCCTGGACCCCTCCCTGATTTNCCACCCTTGCCCA] [+] EMBL CD072353 [TGGTGATCCATCCTTTCCAGGTCGTCCAGGCAGTCCAGGTTGTCCATCTTCGCCTTTTCCCCCTGGCGCACCATCTATACCAGGATCACCTACTTCACCTCTAGGTCCACTCGGTCCGTCTGGTCCACAAGGCCATAAAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCACAGCTGGACAACCTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGACCTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTGGTGGA ] [-] EMBL CD129452 [ GACCCTGGTCTTCCTGGCACAGCTGGACAACCTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGACCTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTGGTGGACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACATATGGGGAGTGAAGGACCACCCTGGACCCCTCCCTGATTTNCCACCCTTGCCCA] [-] EMBL CD129579 [ GTGCCCCGGGGCCTCAAGGTGGGGCTGGATTCGTCGGAGAACCTGGTCCTCCTGGTGGACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACATATGGGGAGTGAAGGACCACC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7959#0 GGGAAGTAGGTGGTGCAGGGCCAGTGGGAGAAGCTGGGTCTCCAGGACAACAAGGTCTTC 60 consensus_7959#1 ------------------------------------------------------------ consensus_7959#0 CCGGAGAACGAGGACTTCAGGGTCCACCAGGTCCTGGGGGAGAGCCAGGCCCACCAGGGC 120 consensus_7959#1 ------------------------------------------------------------ consensus_7959#0 CTAGTGGTCCTTTAGGGATACCTGGACCAGACGGACCGAGTGGACCTAGAGGTGAAGTAG 180 consensus_7959#1 ----------------------------------------TGGTGATCCATCCTTTCCAG 20 *** * * ** consensus_7959#0 GTGATCCTGGTA---TAGATGGTGCGCCAGGGGGAAAAGGCGAAGATGGACAACCTGGAC 237 consensus_7959#1 GTCGTCCAGGCAGTCCAGGTTGTCCATCTTCGCCTTTTCCCCCTGGCGCACCATCTA--- 77 ** *** ** * ** * ** * * * * * * ** * ** consensus_7959#0 TGCCTGGACGACCTGGAAAGGATGGATCACCAGGAAGGCAAGGGAAGTCTGGACCACAAG 297 consensus_7959#1 TACCAGGATCACCTAC------TTCACCTCTAGGTCCACTCGGTCCGTCTGGTCCACAAG 131 * ** *** **** * * * * *** * ** ****** ******* consensus_7959#0 GCCATAAAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCACAGCTGGACAAC 357 consensus_7959#1 GCCATAAAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCACAGCTGGACAAC 191 ************************************************************ consensus_7959#0 CTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGAC 417 consensus_7959#1 CTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGAC 251 ************************************************************ consensus_7959#0 CTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTG 477 consensus_7959#1 CTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTG 311 ************************************************************ consensus_7959#0 GTGGACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACATATGGGGAGTG 537 consensus_7959#1 GTGGACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACATATGGGGAGTG 371 ************************************************************ consensus_7959#0 AAGGACCACC-TGGACC--TCCTGGGCCTCCAGCTATGAGTTA 577 consensus_7959#1 AAGGACCACCCTGGACCCCTCCCTGATTTNCCACCCTTGCCCA 414 ********** ****** *** * * * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||