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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7966 cluster # 7966       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7966#0 length = 571 sequences # 5  
consensus_7966#1 length = 273 sequences # 1  

consensusID : consensus_7966#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 571
fasta sequence
                              [TTAGGAAACGGAACGTATTATATTGGCTTTATTTTGAAGTGCAATCCAATCAGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTGCTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCATCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGA-GGGGCTAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATCTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTATGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATTATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAGATGCAGAGTAAGTTGATAGATAATTCAAAAA]

[-] EMBL CD133761             [TTAGGAAACGGAACGTATTATATTGGCTTTATTNTGAAATGCAATCCAATCAGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATC    CTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGGATCATCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGA GGGGCTAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATCTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTATGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATTATCTCGACGGACGATCAGCAGTTCCC                                                                ]
[+] EMBL CD185596             [           AACGTATTATATTGGCTTTATTTTGAAGTGCAATCCAATCAGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATC    CTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCATCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGA GGGGCTAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATCTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTATGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATTATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAGATGCAGAGTAAGTTGATAGATAATTCAAAAA]
[+] EMBL CD131605             [             CGTATTATATTGGCTTTATTTTGAAGTGCAATCCAATCAGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTGCTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCANCAACAA TTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCATCTTCCGACATAAT                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL SMAA25719            [                   ATATTGGCTTTATTTTGAAGTGCNATCCAATCAGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTGCTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCATCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGAGGGGGCTAACATACGCCTCTTTGCGAATCATTGTGTCATTT                                                                                                                                                                                                                                           ]
[-] EMBL CD194504             [                                                   AGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTGCTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCATCTTCCGACATAATATCGCTCTCCAACACGATTCTCTT                                                                                                                                                                                                                                                                                                      ]


>consensus_7966#0 TTAGGAAACGGAACGTATTATATTGGCTTTATTTTGAAGTGCAATCCAATCAGCGAGAAC ACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTG CTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCG CCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCA TCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGAGGGG CTAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATAT CTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTA TGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAAT TATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAG ATGCAGAGTAAGTTGATAGATAATTCAAAAA



consensusID : consensus_7966#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence
                              [TAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATCTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTATGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATTATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAGATGCAGAGTAAGTTGATAGATCTCCCTTCAACTA]

[-] EMBL CD135958             [TAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATCTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTATGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATTATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAGATGCAGAGTAAGTTGATAGATCTCCCTTCAACTA]


>consensus_7966#1 TAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATC TTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTAT GACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATT ATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAGA TGCAGAGTAAGTTGATAGATCTCCCTTCAACTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7966#0      TTAGGAAACGGAACGTATTATATTGGCTTTATTTTGAAGTGCAATCCAATCAGCGAGAAC 60
consensus_7966#1      ------------------------------------------------------------
                                                                                  

consensus_7966#0      ACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTG 120
consensus_7966#1      ------------------------------------------------------------
                                                                                  

consensus_7966#0      CTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCG 180
consensus_7966#1      ------------------------------------------------------------
                                                                                  

consensus_7966#0      CCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCA 240
consensus_7966#1      ------------------------------------------------------------
                                                                                  

consensus_7966#0      TCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGAGGGG 300
consensus_7966#1      ------------------------------------------------------------
                                                                                  

consensus_7966#0      CTAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATAT 360
consensus_7966#1      -TAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATAT 59
                       ***********************************************************

consensus_7966#0      CTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTA 420
consensus_7966#1      CTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTA 119
                      ************************************************************

consensus_7966#0      TGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAAT 480
consensus_7966#1      TGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAAT 179
                      ************************************************************

consensus_7966#0      TATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAG 540
consensus_7966#1      TATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAG 239
                      ************************************************************

consensus_7966#0      ATGCAGAGTAAGTTGATAGATAATTCAAAAA--- 571
consensus_7966#1      ATGCAGAGTAAGTTGATAGATCTCCCTTCAACTA 273
                      *********************    *   **   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)