These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7966#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 571 fasta sequence [TTAGGAAACGGAACGTATTATATTGGCTTTATTTTGAAGTGCAATCCAATCAGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTGCTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCATCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGA-GGGGCTAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATCTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTATGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATTATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAGATGCAGAGTAAGTTGATAGATAATTCAAAAA] [-] EMBL CD133761 [TTAGGAAACGGAACGTATTATATTGGCTTTATTNTGAAATGCAATCCAATCAGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATC CTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGGATCATCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGA GGGGCTAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATCTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTATGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATTATCTCGACGGACGATCAGCAGTTCCC ] [+] EMBL CD185596 [ AACGTATTATATTGGCTTTATTTTGAAGTGCAATCCAATCAGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATC CTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCATCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGA GGGGCTAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATCTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTATGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATTATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAGATGCAGAGTAAGTTGATAGATAATTCAAAAA] [+] EMBL CD131605 [ CGTATTATATTGGCTTTATTTTGAAGTGCAATCCAATCAGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTGCTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCANCAACAA TTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCATCTTCCGACATAAT ] [+] EMBL SMAA25719 [ ATATTGGCTTTATTTTGAAGTGCNATCCAATCAGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTGCTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCATCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGAGGGGGCTAACATACGCCTCTTTGCGAATCATTGTGTCATTT ] [-] EMBL CD194504 [ AGCGAGAACACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTGCTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCGCCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCATCTTCCGACATAATATCGCTCTCCAACACGATTCTCTT ] consensusID : consensus_7966#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [TAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATCTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTATGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATTATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAGATGCAGAGTAAGTTGATAGATCTCCCTTCAACTA] [-] EMBL CD135958 [TAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATATCTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTATGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAATTATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAGATGCAGAGTAAGTTGATAGATCTCCCTTCAACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7966#0 TTAGGAAACGGAACGTATTATATTGGCTTTATTTTGAAGTGCAATCCAATCAGCGAGAAC 60 consensus_7966#1 ------------------------------------------------------------ consensus_7966#0 ACCAGACACTTGAGGTCCTGAACTAAGTAGTAATATGTTCTTAATCCCTCAGGATCCTTG 120 consensus_7966#1 ------------------------------------------------------------ consensus_7966#0 CTATTCGTAATATCAATCAGGGATCCTATTTTTGAAGTTGTGAAAGATATGTGTTCATCG 180 consensus_7966#1 ------------------------------------------------------------ consensus_7966#0 CCACAAACAATTTCGAGCTCTTGACGGCCAACTCTGTCAGGTACTGGCCATGAAGCATCA 240 consensus_7966#1 ------------------------------------------------------------ consensus_7966#0 TCTTCCGACATAATATCGCTCTCCAACACGATTCTCTTCAGCTCTTCCACTACAGAGGGG 300 consensus_7966#1 ------------------------------------------------------------ consensus_7966#0 CTAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATAT 360 consensus_7966#1 -TAACATACGCCTCTTTGCGAATCATTGTGTCATTTTTATAATTGGAGTTGTTAGCATAT 59 *********************************************************** consensus_7966#0 CTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTA 420 consensus_7966#1 CTTAACTTGCCTTCAGGTCTGAACTCGAACTCAAGAAATTCATGTCCAAACTTGCCTTTA 119 ************************************************************ consensus_7966#0 TGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAAT 480 consensus_7966#1 TGACCAACGTAGTATCGCAAATAAAATGAGCTTGTCATTTGTTAATCACTTTTTTTGAAT 179 ************************************************************ consensus_7966#0 TATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAG 540 consensus_7966#1 TATCTCGACGGACGATCAGCAGTTCCCTGGTCACTACAAAATATGTTGTTTTTTGGATAG 239 ************************************************************ consensus_7966#0 ATGCAGAGTAAGTTGATAGATAATTCAAAAA--- 571 consensus_7966#1 ATGCAGAGTAAGTTGATAGATCTCCCTTCAACTA 273 ********************* * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||