Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7971 cluster # 7971       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7971#0 length = 673 sequences # 5  
consensus_7971#1 length = 152 sequences # 1  

consensusID : consensus_7971#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 673
fasta sequence
                              [ATCACATTGTTCATGGAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGTGATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGTGATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGATGACACTGTCAAAAAGTGACCATGAGGTTGTGTAGCAAATGTTCCGCTGGCAAGATTAAAAGTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAGGGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCTGTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGAAGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTTACTTTTTCCACACTTAGAGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTATTTTCAGTTTACGAGGATGTTTAGCTGTGTCGTAACACTTTGTCGCTTGTGGGACGCTACGTTTCTCACCACAGTTTGTCTTAGCATCAGATGTTGAAGTTATTGGACTCCTAGTTACATTCACTTTCAAGTCACAGT]

[+] EMBL CD071559             [ATCACATTGTTCATGGAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGTGATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGTGATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGATGACACTGTCAAAAAGTGACCATGAGGTTGTGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD198217             [ TCACATTGTTCATGGAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGTGATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGTGATCCTACTACATTACCTTCAGTTGAAGAATTAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD066128             [               GAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGTGATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGTGATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGATGACACTGTCAAAAAGTGACCATGAGGTTGTGTAGCAAATGTTCCGCTGGCAAGATTAAAAGTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAGGGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCTGTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGAAGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTTACTTTTTCCACACTTAGAGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTATTTTCAGTTTACGAGGATGTTTAGCT                                                                                                                ]
[+] EMBL CD065248             [                                                                                    AAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGTGATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGATGACACTGTCAAAAAGTGACCATGAGGTTGTGTAGCAAATGTTCCGCTGGCAAGATTAAAAGTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAGGGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCTGTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGAAGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTTACTTTTTCCACACTTAGAGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTATTTTCAGTTTACGAGGATGTTTAGCTGTGTCGTAACACTTTGTCGCTTGTGGGACGCTACGTTTCTCACCACAGTTTGTCTTAGCATCAGATGTTGAAGTTATTGGACTCCTAGTTACATTCACTTTCAAGTCACAGT]
[-] EMBL CD189708             [                                                                                                                                                                                                                                               AGTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAGGGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCTGTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGAAGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTTACTTTTTCCACACTTAGAGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTATTTTCAGTTTACGAGGATGTTTAGCTGTGTCGTAACACTTTGTCGCTTGTGGGACGCTACG                                                                             ]


>consensus_7971#0 ATCACATTGTTCATGGAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGT GATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGT GATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGAT GACACTGTCAAAAAGTGACCATGAGGTTGTGTAGCAAATGTTCCGCTGGCAAGATTAAAA GTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAG GGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCT GTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGA AGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTTACT TTTTCCACACTTAGAGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTATTTTC AGTTTACGAGGATGTTTAGCTGTGTCGTAACACTTTGTCGCTTGTGGGACGCTACGTTTC TCACCACAGTTTGTCTTAGCATCAGATGTTGAAGTTATTGGACTCCTAGTTACATTCACT TTCAAGTCACAGT



consensusID : consensus_7971#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 152
fasta sequence
                              [ATTGTTACACTATCCGTGCTTCACTTTTTCCCCAACCAGTTCAAACATATCCTTCCGGATTTCACCATTCCCAAGCTTCTCCCTATTTCACTGCCATAGCATGTTCCCCGGACGGCCTGAATGCTAATCAAGCTGGCGCATTTTTCGCTCCT]

[+] EMBL CD198016             [ATTGTTACACTATCCGTGCTTCACTTTTTCCCCAACCAGTTCAAACATATCCTTCCGGATTTCACCATTCCCAAGCTTCTCCCTATTTCACTGCCATAGCATGTTCCCCGGACGGCCTGAATGCTAATCAAGCTGGCGCATTTTTCGCTCCT]


>consensus_7971#1 ATTGTTACACTATCCGTGCTTCACTTTTTCCCCAACCAGTTCAAACATATCCTTCCGGAT TTCACCATTCCCAAGCTTCTCCCTATTTCACTGCCATAGCATGTTCCCCGGACGGCCTGA ATGCTAATCAAGCTGGCGCATTTTTCGCTCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7971#0      ATCACATTGTTCATGGAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGT 60
consensus_7971#1      ------------------------------------------------------------
                                                                                  

consensus_7971#0      GATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGT 120
consensus_7971#1      ------------------------------------------------------------
                                                                                  

consensus_7971#0      GATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGAT 180
consensus_7971#1      ------------------------------------------------------------
                                                                                  

consensus_7971#0      GACACTGTCAAAAAGTGACCATGAGGTTGTGTAGCAAATGTTCCGCTGGCAAGATTAAAA 240
consensus_7971#1      ------------------------------------------------------------
                                                                                  

consensus_7971#0      GTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAG 300
consensus_7971#1      ------------------------------------------------------------
                                                                                  

consensus_7971#0      GGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCT 360
consensus_7971#1      ------------------------------------------------------------
                                                                                  

consensus_7971#0      GTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGA 420
consensus_7971#1      ------------------------------------------------------------
                                                                                  

consensus_7971#0      AGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTT-AC 479
consensus_7971#1      ------------------------------------ATTGTTACACTATCCGTGCTTCAC 24
                                                          ***    *  **      *** **

consensus_7971#0      TTTTTCCACACTTAG---AGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTAT 536
consensus_7971#1      TTTTTCCCCAACCAGTTCAAACATATCCTTCCGGATTTCACCATTCCCAAGCTTCTCCCT 84
                      ******* **   **   *    **  **      *    * **   * ** *  **  *

consensus_7971#0      -TTTCAGTTTACGAGGATGTTTAGCTGTGTCGTAACACTTTGTCGCTTGTGGGAC-GCTA 594
consensus_7971#1      ATTTCACTGCCATAGCATGTTCC------CCGGACGGCCTGAATGCTAATCAAGCTGGCG 138
                       ***** *     ** *****         ** *   * *    ***  *    * *   

consensus_7971#0      CGTTTCTCACCACAGTTTGTCTTAGCATCAGATGTTGAAGTTATTGGACTCCTAGTTACA 654
consensus_7971#1      CATTTTTCGCTCCT---------------------------------------------- 152
                      * *** ** *  *                                               

consensus_7971#0      TTCACTTTCAAGTCACAGT 673
consensus_7971#1      -------------------
                                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)