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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 859 fasta sequence
[TACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTTACCTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATCTTCGCAACACATCGCCTCTATTTCTCGTCTAAACCCACCTGTCCTGAAGTATATGTATGTGCGATTCCTAATAATGGACACAATAGTACTACCTGTCACACTGACTTAGGTGAAGTTAGTGGAAGTTGTGAAGATGAAATCAATGACCCATATTTCTTCATGTTCCCACTTGCTACTGGTCTGAAAATTTCAGTTAACAATGTTGGTGAATATCCGGGTATACATAATAACAGCATGCATATAATTGTCACCTCTGGTTATCGTTTACCACCTGGTGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACATTTGATAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGTTTACCTATACGATTATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAACAAAATTGTTCATTTACACCTCCTATAAGCTTTCCATATACGAAGTTCCAGATTGAAAACGAATATCGAATGCTGAATGATGTTTTAAATCAATTTGAAAAGAATACAAGTTTATTAGAATTTGTTGGCTATCGAAAAAAAACTTCTGAACAACCGATCACTATGCTGCTCTTTGCATACGTCAATACGTTTTGGTTATCACTTATA]
[+] EMBL CD197567 [TACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTTACCTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATCTTCGCAACACATCGCCTCTATTTCTCGTCTAAACCCACCTGTCCTGAAGTATATGTATGTGCGATTCCTAATAATGGACACAATAGTACTACCTGTCACACTGACTTAGGTGAAGTTAGTGGAAGTTGTGAAGATGAAATCAATGACCC ]
[+] EMBL AI975858 [ CACTGACTTAGGTGAAGTTAGTGGAAGTTGTGAAGATGAAATCAATGACCCATATTTCTTCATGTTCCCACTTGCTACTGGTCTGAAAATTTCAGTTAACAATGTTGGTGAATATCCGGGTATACATAATAACAGCATGCATATAATTGTCACCTCTGGTTATCGTTTACCACCTGGTGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACATTTGATAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGTTTACCTATACGATTATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAACAAAATTGTTCATTTACACCTCCTATAAGCTTTCCATATACGAAGTTCCAGATTGAAAACGAATATCGAATGCTGAATGATGTTTTAAATCAATTTGAAAAGAATACAAGTTTATTAGAATTTGTTGGCTATCGAAAAAAAACTTCTGAACAACCGATCACTATGCTGCTCTTTGCATACGTCAATACGTTTTGGTTATCACTTATA]
[+] EMBL CD178679 [ GAAGTTAGTGGAAGTTGTGAAGATGAAATCAATGACCCATATTTCTTCATGTTCCCACTTGCTACTGGTCTGAAAATTTCAGTTAACAATGTTGGTGAATATCCGGGTATACATAATAACAGCATGCATATAATTGTCACCTCTGGTTATCGTTTACCACCTGATGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACATTTGATAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGTTTACCTATACGATTATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAACAAAATTGTTCATTTACAC ]
[-] EMBL CD065299 [ ACAGCATGCATATAATTGTCACCTCTGGTTATCGTTTACCACCTGGTGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACATTTGATAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGTTTACCTATACGATTATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAACAAAATTG ]
consensusID : consensus_7974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 594 fasta sequence
[ACAGCGCAATATTCACTTGCTTGGCAACCTTAAAGAACAAAGTTTATGGTGTGTTGCTCACAAAGACCAATTTACTATCTGCGAAAGCAAACTCCTAGGAGAGTTCGGCGCCGACGCTATATTATAAATTTTGATGCAGATGGAACAGAAATGGCTTCCCTTTTGTGTTTAGGATTAATAATTTTATTCGCGTTACTGTCCACAGACTCATTTGTTGAGGAGATTTCTAAAGATTTGTCAGATACACTCGTCGTACGAAATTCTTGTCCATCAACTTCGGAAAAGCATTTATCATTAGAAATCATTATTTCTCCTACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTTAACTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATTTTCGCAACACATCGCCTCTATTTCTCCTGATTTNNCCACCCTTGCCAGGGGTGACCGAGC]
[+] EMBL AI975391 [ACAGCGCAATATTCACTTGCTTGGCAACCTTAAAGAACAAAGTTTATGGTGTGTTGCTCACAAAGACCAATTTACTATCTGCGAAAGCAAACTCCTAGGAGAGTTCGGCGCCGACGCTATATTATAAATTTTGATGCAGATGGAACAGAAATGGCTTCCCTTTTGTGTTTAGGATTAATAATTTTATTCGCGTTACTGTCCACAGACTCATTTGTTGAGGAGATTTCTAAAGATTTGTCAGATACACTCGTCGTACGAAATTCTTGTCCATCAACTTCGGAAAAGCATTTATCATTAGAAATCATTATTTCTCCTACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTTAACTGATCTTTCTGTTTGGAACG ]
[-] EMBL CD129502 [ TAAAGAACAAAGTTTATGGTGTGTTGCTCACAAAGACCAATTTACTATCTGCGAAAGCAAACTCCTAGGAGAGTTCGGCGCCGACGCTATATTAGAAATTTTGATGCAGATGGAACAGAAATGGCTTCCCTTTTGTGTTTAGGATTAATAATTTTATTCGCGTTACTGTCCACAGACTCATTTGTTGAGGAGATTTCTAAAGATTTGTCAGATACACTCGTCGTACGAAATTCTTGTCCATCAACTTCGGAAAAGCATTTACCATTAGAAATCATTATTTCTCCTACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGCATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTCTTACCTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATTTTCGCAACACATCGCCTCTATTTCTCCTGATTTNNCCACCCTTGCCAGGGGTGACCGAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7974#0 TACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCCTATGC--ATGATGTTTTG 58
consensus_7974#1 ----ACAGCGCAATATTCACTTGCTTGGCAACCTTAAAGAACAAAGTTTATGGTGTGTTG 56
* * * ** **** * ** * * * * * * *** *** ***
consensus_7974#0 AATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGATCTTCATTTTTCTTATGAG 118
consensus_7974#1 CTCACAAAGACCAATTTACT--ATCTG----CGAAAGCAAACTCCTAGGAGAGTTCGGCG 110
** * ** * * ** **** * ** * * ** * *
consensus_7974#0 CTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGATTACACGAACCTAAACTTC 178
consensus_7974#1 CCGACGCTATAT--------TATAAATTTT--GATG-CAGATG----GAACAGAAATGGC 155
* * *** * ******* ** ***** **** *** *
consensus_7974#0 TTACCTGATCTTTCTGTTTGGAACGACAGATCCATCCTTATCTTCGCAACACATCGCCTC 238
consensus_7974#1 TTCCCT----TTTGTGTTTAGGATTAATAATT--TTATTCGCGTTACTGTCCACAGACTC 209
** *** *** ***** * * * ** * ** * * * ** * ***
consensus_7974#0 TATTTCTCGTCTAAACCCACCTGTCCTGAAGTATATGTATGTGCGATTCCTAATAATGGA 298
consensus_7974#1 -ATTTGTTGAGGAGAT-------TTCTAAAG-----ATTTGTCAGAT-----ACACTCGT 251
**** * * * * * ** *** * *** *** * * * *
consensus_7974#0 CACAATAGTACTACCTGTCACACTGACTTAGGTGAAGTTAGTGGAAGTTGTGAAGATGAA 358
consensus_7974#1 CGTACGA--AATTCTTGTC-CATCAACTTCGGAAAAGC-------ATTTATCATTA-GAA 300
* * * * * * **** ** **** ** *** * ** * * * ***
consensus_7974#0 ATCAATGACCCATATTTCTTCATGTTCCCACTTGCTACTGGTCTGAAAATTTCAGTTAAC 418
consensus_7974#1 ATCATTATTTC----TCCTACGATATCCCATCTTTCATGTATTTACAATTTCTTGACGCC 356
**** * * * ** * ***** * * * * ** ** * *
consensus_7974#0 AATGTTGGTGAATATCCGGGTATACATAATAACAGCATGCATATAATTGTCACCTCTGGT 478
consensus_7974#1 TATGC--ATGATGTTTTGAATACTACTGACAGTATCCTCAATCTAAATTCAAATATCGAT 414
*** *** * * ** * * * * * * ** *** * * * *
consensus_7974#0 TATCGTTTACCACCTGG--TGTTTTCACCTGTCCATCAGGCTTTTTTGCTTGTGATACAT 536
consensus_7974#1 CTTCATTTTTCTTATGAGCTACTCCCGTATAACAATTCCACAAATTTTTCAATAACAGAT 474
** *** * ** * * * * * ** * *** * * * **
consensus_7974#0 TTGATAAAATAAATGAACGTCGCAATTCTCCGTTGCAATGGCCCTATCGTATCTGT--TT 594
consensus_7974#1 TACACGAACC---TAAACTTCTTAACTGATCTTTCTGTTTGGAACGACAGATCCATCCTT 531
* * ** * *** ** ** * * ** * * * *** * **
consensus_7974#0 ACCTATACGAT-TATGGTGTGATAATGTGTTGAATTGTCCAATAAGTGGTTCGGATGAAC 653
consensus_7974#1 ATTTTCGCAACACATCGCCTCTATTTCTCCTGATTTNNCCACCCT-TGCCAGGGGTGACC 590
* * * * ** * * * * *** ** *** ** ** *** *
consensus_7974#0 AAAATTGTTCATTTACACCTCCTATAAGCTTTCCATATACGAAGTTCCAGATTGAAAACG 713
consensus_7974#1 GAGC-------------------------------------------------------- 594
*
consensus_7974#0 AATATCGAATGCTGAATGATGTTTTAAATCAATTTGAAAAGAATACAAGTTTATTAGAAT 773
consensus_7974#1 ------------------------------------------------------------
consensus_7974#0 TTGTTGGCTATCGAAAAAAAACTTCTGAACAACCGATCACTATGCTGCTCTTTGCATACG 833
consensus_7974#1 ------------------------------------------------------------
consensus_7974#0 TCAATACGTTTTGGTTATCACTTATA 859
consensus_7974#1 --------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||