These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [TATATTGTTAAGCAGTTAATTCAGTTCAGAAATATTACTTCAGAAATACAAAACAAAATGGATAGAGAATTATTGACTGTCCCACAAATATTATTTTTGTTCACGAGGACTTAACATTTGCTGCGACCTCAGCAATTCCTACTCGCCGTTGGCCAACATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAAATATCCATAACGGTCCACTTGGAAAGTCAGTACCAATGAAGCAAGTTCTGCAAATTCGTGAACCATTTGAAACTTTCTCAACCATATAATCATCTGCTTTCATTTGAATAGATTTCCCATTAATTTTAATTCGATTATTGGTAACCTTTGAATTTCATTCCATTCCACATTATATTCATTATTGGACATTTGTATACTCCCAGGTTTTTTNTGAGGTTATAATTCCGCAAGTTGGCCCTGTTTTAGGCTTACCTTTCGTTAGGGGGTCTCCATTGGAAAATTTCACCTTGTGGA] [+] EMBL SMAA69900 [TATATTGTTAAGCAGTTAATTCAGTTCAGAAATATTACTTCAGAAATACAAAACAAAATGGATAGAGAATTATTGACTGTCCCACAAATATTATTTTTGTTCACGAGGACTTAACATTTGCTGCGACCTCAGCAATTCCTACTCGCCGTTGGCCAACATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAAATATCCATAACGGTCCACTTGGAAAGTCAGTACCAATGAAGCAAGTTCTGCAAATTCGTGAACCATTTGAAACTTTCTCAACCATATAATCATCTGCTTTCATTTGAATAGATTTCCCATTAATTTTAATTCGATTATTGGTAACCTTTGAATTTCATTCCATTCCACATTATATTCATTATTGGACATTTGTATACTCCCAGGTTTTTTNTGAGGTTATAATTCCGCAAGTTGGCCCTGTTTTAGGCTTACCTTTCGTTAGGGGGTCTCCATTGGAAAATTTCACCTTGTGGA] consensusID : consensus_7977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 360 fasta sequence [TTTTGTTTATTTATACAACTGAGAAAACGAAAAAGCAAGCAACAATGCAGTATAAGTAAAAAAGAAATGGAAAGCTCAGTCACTTATAATAAAAAGACGTTCTTTATCGTTTCATATATTGTTAACTAGATAATTCAGTTCAGAAATACAAAATAAACTGGAAAGAGAATTATTGACTGTTACACAAATATTATTTTTGTTCATAAGGACTTAACATTTGCTGCGACATCAGCAATTCCTACTCGCCGTTGGCCAAAATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAAATATCCATAACGGGCCACTTGGGAAGTCAGTACCAATGAAGCAAGTCCTGCAAATTCGTGAA] [-] EMBL AI976840 [TTTTGTTTATTTATACAACTGAGAAAACGAAAAAGCAAGCAACAATGCAGTATAAGTAAAAAAGAAATGGAAAGCTCAGTCACTTATAATAAAAAGACGTTCTTTATCGTTTCATATATTGTTAACTAGATAATTCAGTTCAGAAATACAAAATAAACTGGAAAGAGAATTATTGACTGTTACACAAATATTATTTTTGTTCATAAGGACTTAACATTTGCTGCGACATCAGCAATTCCTACTCGCCGTTGGCCAAAATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAAATATCCATAACGGGCCACTTGGGAAGTC ] [+] EMBL AI067388 [ GAAAACGAAAAAGCAAGCAACAATGCAGTATAAGTAAAAAAGAAATGGAAAGCTCAGTCACTTATAATAAAAAGACGTTCTTTACCGTTTCATACATTGTTAACTAGATAATTCAGTTCAGAAATACAAAATAAACTGGAAAGAGAATTATTGACTGTTACACAAATATTATTTTTGTTCATAAGGACTTAACATTTGCTGCGACATCAGCAATTCCTACTCGCCGTTGGCCAAAATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAAATATCCATAACGGGCCACTTGGGAAGTCAGTACCAATGAAGCAAGTCCTGCAAATTCGTGAA] [+] EMBL AI068099 [ AAAACGAAAAAGCAAGCAACAATGCAGTATAAGTAAAAAAGAAATGGAAAGCTCAGTCACTTATAATAAAAAGACGTTCTTTATCGTTTCATATATTGTTAACTAGATAATTCAGTTCAGAAATACAAAATAAACTGGAAAGAGAATTATTGACTGTTACACAAATATTATTTTTGTTCATAAGGACTTAACATTTGCTGCGACATCAGCAATTCCTACTCGCCGTTGGCCAAAATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAAATATCCATAACGGGCCACTTGGGAAGTCAGTACCAATGAAGCAAGTCCTGCAAAT ] [+] EMBL AI067317 [ AAAACGAAAAAGCAAGCAACAATGCAGTATAAGTAAAAAAGAAATGGAAAGCTCAGTCACTTATAATAAAAAGACGTTCTTTATCGTTTCATATATTGTTAACTAGATAATTCAGTTCAGAAATACAAAATAAACTGGAAAGAGAATTATTGACTGTTACACAAATATTATTTTTGTTCATAAGGACTTAACATTTGCTGCGACATCAGCAATTCCTACTCGCCGTTGGCCAAAATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAAATATCCATAACGGGCCACTTGGGAAGTCAGTACCAATGAAGCAAGT ] [-] EMBL AA958285 [ ATATA TGTTAACTAGATAA TCAG TCAG AATAC AAATAAACTGG AAGAGAA TATTGACTG TACACCAATA TA TTTTGTTCATAA GACTTAACATTTGCTGCGACATCAGCAATTCCTACTC CCGTTGGCCAAAATCAAATACTGTATAAACTTTTCTT AAAATACATCCCCAAATATCCATAACGGGCCACTTGGGAAGTCAGTACCAATGAAGCAAGTCCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7977#0 ------------------------------------------------------------ consensus_7977#1 TTTTGTTTATTTATACAACTGAGAAAACGAAAAAGCAAGCAACAATGCAGTATAAGTAAA 60 consensus_7977#0 ------------------------------------------TATATTGTTAAGCAGTTA 18 consensus_7977#1 AAAGAAATGGAAAGCTCAGTCACTTATAATAAAAAGACGTTCTTTATCGTTTCATATATT 120 * *** *** * * consensus_7977#0 ATTCAGTTCAGAAATATTACTTCAGAAATACAAAACAAAATGGATAGAGAATTATTGACT 78 consensus_7977#1 GTTAA--CTAGATAATTCAGTTCAGAAATACAAAATAAACTGGAAAGAGAATTATTGACT 178 ** * *** * * * *************** *** **** *************** consensus_7977#0 GTCCCACAAATATTATTTTTGTTCACGAGGACTTAACATTTGCTGCGACCTCAGCAATTC 138 consensus_7977#1 GTTACACAAATATTATTTTTGTTCATAAGGACTTAACATTTGCTGCGACATCAGCAATTC 238 ** ********************* ********************** ********** consensus_7977#0 CTACTCGCCGTTGGCCAACATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAA 198 consensus_7977#1 CTACTCGCCGTTGGCCAAAATCAAATACTGTATAAACTTTTCTTAAAAATACATCCCCAA 298 ****************** ***************************************** consensus_7977#0 ATATCCATAACGGTCCACTTGGAAAGTCAGTACCAATGAAGCAAGTTCTGCAAATTCGTG 258 consensus_7977#1 ATATCCATAACGGGCCACTTGGGAAGTCAGTACCAATGAAGCAAGTCCTGCAAATTCGTG 358 ************* ******** *********************** ************* consensus_7977#0 AACCATTTGAAACTTTCTCAACCATATAATCATCTGCTTTCATTTGAATAGATTTCCCAT 318 consensus_7977#1 AA---------------------------------------------------------- 360 ** consensus_7977#0 TAATTTTAATTCGATTATTGGTAACCTTTGAATTTCATTCCATTCCACATTATATTCATT 378 consensus_7977#1 ------------------------------------------------------------ consensus_7977#0 ATTGGACATTTGTATACTCCCAGGTTTTTTNTGAGGTTATAATTCCGCAAGTTGGCCCTG 438 consensus_7977#1 ------------------------------------------------------------ consensus_7977#0 TTTTAGGCTTACCTTTCGTTAGGGGGTCTCCATTGGAAAATTTCACCTTGTGGA 492 consensus_7977#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||