These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 547 fasta sequence [TCCACCACTGCAACCTCCACCATAGCTGCCGCCACAGTCACCACCAGTGTACCTATTCTTTCGAATAATATCTACCGGTGGCCCGAGGCTAGGTCTTTGTGTAGGAAAGTTGGTTTGTTGTGTTGTGAAAGCACTTGAGTAACTAGTTGAAAATGAATTCCTTCTATTCTGATATGGAACAGATGCAGTGTAGGCCGGAGTCAATATTTGTCTTTGCGGTGGTGAAGTGTGATGAAAACTTAAGGTATTCGAGTGACGTGGCACATTCCAACCTCTATACGGCTGAGTGTTCCATATCGTTTGACTAGGTGAAACATATTCATTTCGTCTATTGTCGATTCCATTCATTTGGTGAATCCATGTCTCTAATTCACCATCTTCTAGATCATTGTCTATCGGAAATGTCTTTTGTGGTGTTGTTGTTGCTGTCGATGGTATGACGTATGCCGAAGATTCATCATCAGAACGAAGGATCCTATATCCTTCGCTACCAACAGCCGGTTTTAAGCCAAATAAATTTGAAACTTTATTCTGATAAGTTGGTATC] [+] EMBL CD061539 [TCCACCACTGCAACCTCCACCATAGCTGCCGCCACAGTCACCACCAGTGTACCTATTCTTTCGAATAATATCTACCGGTGGCCCGAGGCTAGGTCTTTGTGTAGGAAAGTTGGTTTGTTGTGTTGTGAAAGCACTTGAGTAACTAGTTGAAAATGAATTCCTTCTATTCTGATATGGAACAGATGCAGTGTAGGCCGGA ] [-] EMBL CD084000 [ GAGTAACTAGTTGAAAATGAATTCCTTCTATTCTGATATGGAACAGATGCAGTGTAGGCCGGAGTCAATATTTGTCTTTGCGGTGGTGAAGTGTGATGAAAACTTAAGGTATTCGAGTGACGTGGCACATTCCAACCTCTATACGGCTGAGTGTTCCATATCGTTTGACTAGGTGAAACATATTCATTTCGTCTATTGTCGATTCCATTCATTTGGTGAATCCATGTCTCTAATTCACCATCTTCTAGATCATTGTCTATCGGAAATGTCTTTTGTGGTGTTGTTGTTGCTGTCGATGGTATGACGTATGCCGAAGATTCATCATCAGAACGAAGGATCCTATATCCTTCGCTACCAACAGCCGGTTTTAAGCCAAATAAATTTGAAACTTTATTCTGATAAGTTGGTATC] consensusID : consensus_8003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [AAACATGGTGAAGACATCAGCATCATATTGGAAGAACGTGTCCCCGTGTCGATGAACTTGAGGTGACCTGACTTGCTCTTCTTCCGCACCATATTGGTCATAACTGTTTCCTGTATGAAAATCTGTCAACACTTCGTACGCCTTCTTGATTTTTTTAAACGCTTCTGCTGCACCCGGGGCCCTGTTTTTGTCAGGATGAAACTTGAGGGCATGAAGTTTAAAAGCCTTTTTAATTTCTTCGTCTGATGCAGTTTGCGACACTCCAAGAATTTCGTAGTAATTTTTGCAAGCCAGTACTTTCCTCAACGAATCTATTTGGGTTTTAGTGAATTCCTTATCCGGTTGTTTATTTCTGGTAGATTCAGCGCTAGGATAGGGACCTCCATTTTCTTGGGAACCTCTGGTGCTAGACGAACGAGACCTAGGTTTCACTAAAAACTCCAGTCCTTCTATGTTGACTGACGGATCCAATCTCAT] [+] EMBL CD202107 [AAACATGGTGAAGACATCAGCATCATATTGGAAGAACGTGTCCCCGTGTCGATGAACTTGAGGTGACCTGACTTGCTCTTCTTCCGCACCATATTGGTCATAACTGTTTCCTGTATGAAAATCTGTCAACACTTCGTACGCCTTCTTGATTTTTTTAAACGCTTCTGCTGCACCCGGGGCCCTGTTTTTGTCAGGATGAAACTTGAGGGCATGAAGTTTAAAAGCCTTTTTAATTTCTTCGTCTGATGCAGTTTGCGACACTCCAAGAATTTCGTAGTAATTTTTGCAAGCCAGTACTTTCCTCAACGAATCTATTTGGGTTTTAGTGAATTCCTTATCCGGTTGTTTATTTCTGGTAGATTCAGCGCTAGGATAGGGACCTCCATTTTCTTGGGAACCTCTGGTGCTAGACGAACGAGACCTAGGTTTCACTAAAAACTCCAGTCCTTCTATGTTGACTGACGGATCCAATCTCAT] consensusID : consensus_8003#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [GAAGAACCCCCGCGTTGGAACCCGACGGAAAGGCCCAGGACAGAGTGGATTGGAGAATGCTGGTCGGCGGCTTATGCTTCATTGGGAGTAACAGGCGTAAGTAAGTAAGTAATCTCTTATTGTTCTTCTTACATCTATCTACCTCTTGTTATTCGGGACATAATTTCTTTACTGTTCAACCGTATTCTGATTTAAAGACTTGTTGAGTGAGTTAGTGTCCAAGACTAGTAAGCTATGGGAATAGCTGGGTTGTAATAAGAGAAATTATAACACTGAGAGAAAAAGAGCGGATAATGAAATCAATAACATGTAAAATAAATGAACAATAGACAACAAAATTCGTGGGTATGACCACCCTAGTTATTTGGAAATTTTAGAACACTAGTTTGACAATATAAAACATTAAATTTATTTGGACTTTCAACTTAAGGAAACCGTTAATGGACAAACCAACAGTTTAATGAACCC] [+] EMBL CD059669 [GAAGAACCCCCGCGTTGGAACCCGACGGAAAGGCCCAGGACAGAGTGGATTGGAGAATGCTGGTCGGCGGCTTATGCTTCATTGGGAGTAACAGGCGTAAGTAAGTAAGTAATCTCTTATTGTTCTTCTTACATCTATCTACCTCTTGTTATTCGGGACATAATTTCTTTACTGTTCAACCGTATTCTGATTTAAAGACTTGTTGAGTGAGTTAGTGTCCAAGACTAGTAAGCTATGGGAATAGCTGGGTTGTAATAAGAGAAATTATAACACTGAGAGAAAAAGAGCGGATAATGAAATCAATAACATGTAAAATAAATGAACAATAGACAACAAAATTCGTGGGTATGACCACCCTAGTTATTTGGAAATTTTAGAACACTAGTTTGACAATATAAAACATTAAATTTATTTGGACTTTCAACTTAAGGAAACCGTTAATGGACAAACCAACAGTTTAATGAACCC] consensusID : consensus_8003#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence [AGCTATATTGGCTGGAACATATGTTTCTGTAGGTTCTACCATGCCAGGCAGGTCGATTGGAGAACAGTAAGACTAAAAGCAACGACTCAAGGTCTGAGGGCGAAGTCGTACGGCTGACTGTAGAGGGTTGTGACAGCAGTAAGGTGTTTCCCTCGGACAACCAGCATAACAGCGATGCTGCCTTCTCACAAGGAAGGAAAGGGTTAGAAAAGGTCGACCCTAAAAATGTCACACCTCACCTTACCTCACGGATTTCCGTCTCCGACGATAAGGCCCTTTGAAGAACGGAGCTAACACGTTAAAAACCTCCCACAAGAAGGCCGTGTGTGACCAGTCTCAAGCAGTTGTCCCTTGGACTCTGCGGTCTTGCTCCTAGGTCGTTAAGACCAACACCAATCCAACTTCCCTTTCAGGTCCCTCAAGAAATACTCTTCCACGGTGTGGGCAGCCGG] [+] EMBL CD161411 [AGCTATATTGGCTGGAACATATGTTTCTGTAGGTTCTACCATGCCAGGCAGGTCGATTGGAGAACAGTAAGACTAAAAGCAACGACTCAAGGTCTGAGGGCGAAGTCGTACGGCTGACTGTAGAGGGTTGTGACAGCAGTAAGGTGTTTCCCTCGGACAACCAGCATAACAGCGATGCTGCCTTCTCACAAGGAAGGAAAGGGTTAGAAAAGGTCGACCCTAAAAATGTCACACCTCACCTTACCTCACGGATTTCCGTCTCCGACGATAAGGCCCTTTGAAGAACGGAGCTAACACGTTAAAAACCTCCCACAAGAAGGCCGTGTGTGACCAGTCTCAAGCAGTTGTCCCTTGGACTCTGCGGTCTTGCTCCTAGGTCGTTAAGACCAACACCAATCCAACTTCCCTTTCAGGTCCCTCAAGAAATACTCTTCCACGGTGTGGGCAGCCGG] consensusID : consensus_8003#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [TAAAGGAAAAAGCAAGATCCTCGAATGCAACACGGAGAACACCAACACAATCACACTTGATAGAGAAGTCCTGGAAGGGGTAGAATCTTTCACGTACCTAGGCAGCATCAAGAAGGATCTGATGCAGATGTAAAGGCGGGATTGGCAAAGCAAGAGCAACATTCCCCACAAGTGAAGATTATATGGAACTCAAAACAACTGTCAACTAATATCAAAGACAGAATCTTCAATATGAACGTCAAGACAGTTCTACTATACGGACTGAAGCTTGGAAAACTACCACAACCATCATCAGAAAGTACAAGTATCTATAAACAATTATGTACACAAGATACTCAATGTCCGTTGGTCGGATACCATCAGCAACAGCCTACTGTGAGAGAAGACAAACCA] [+] EMBL CD092976 [TAAAGGAAAAAGCAAGATCCTCGAATGCAACACGGAGAACACCAACACAATCACACTTGATAGAGAAGTCCTGGAAGGGGTAGAATCTTTCACGTACCTAGGCAGCATCAAGAAGGATCTGATGCAGATGTAAAGGCGGGATTGGCAAAGCAAGAGCAACATTCCCCACAAGTGAAGATTATATGGAACTCAAAACAACTGTCAACTAATATCAAAGACAGAATCTTCAATATGAACGTCAAGACAGTTCTACTATACGGACTGAAGCTTGGAAAACTACCACAACCATCATCAGAAAGTACAAGTATCTATAAACAATTATGTACACAAGATACTCAATGTCCGTTGGTCGGATACCATCAGCAACAGCCTACTGTGAGAGAAGACAAACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8003#2 -------------------------------GAAGAACCCCCGCGTTGGAACCCGA-C-- 26 consensus_8003#4 --------------------------TAAAGGAAAAAGCAAGATCCTCGAATGCAA-CA- 32 consensus_8003#0 TCCACCACTGCAACCTCCACCATAGCTGCCGCCACAGTCACCACCAGTGTACCTAT-TCT 59 consensus_8003#1 ------------------AAACATGGTGAAGACATCAGCATCATATTGGAAGAACG-TGT 41 consensus_8003#3 -----AGCTATATTGGCTGGAACATATGTTTCTGTAGGTTCTACCATGCCAGGCAGGTCG 55 * consensus_8003#2 ---GGAAAGGCCCAGGACAG----AGTGGATTGGAGAATGCTGGTCGGCGGCTTATGCTT 79 consensus_8003#4 --CGGAGAACACCAACACAATCACACTTGATAGAGAAGTCCTGGAAGGGGTAGAATCTTT 90 consensus_8003#0 TTCGAATAATATCTAC-CGGTGGCCCGAGGCTAGGTCTTTGTGTAGGAAAGTTGGTTTGT 118 consensus_8003#1 CCCCGTGTCGATGAACTTGAGGTGACCTGACTTGCTCTTCTT---CCGCACCATATTGGT 98 consensus_8003#3 ATTGGAGAACAGTAAGACTAAAAGCAACGACTCAAGGTCTGAGGGCGAAGTCGTACGGCT 115 * * consensus_8003#2 CATTGGGAGTAAC-AGGC-GTAAGTAAGTAAGTAATCTCTTATTGTTCTTCTTACATCTA 137 consensus_8003#4 CAC-----GTACCTAGGC-AGCATCAAGAAGG--ATCTGATGCAG--------ATGTAAA 134 consensus_8003#0 TGTGTTGTGAAAGCACTTGAGTAACTAGTTGAAAATGAATTCCTTCTATTCTGATATGGA 178 consensus_8003#1 CATAACTGTTTCCTGTATGAAAATCTGTCAACACTTCGTACGCCTTCTTGATTTTTTTAA 158 consensus_8003#3 GACTGTAGAGGGTTGTGACAGCAGTAAGGTGTTTCCCTCGGACAACCAGCATAACAGCGA 175 * * consensus_8003#2 TCTACCTCTTGTTATTCGGGACATAATTTCTTTACTGTTCAACCGTA----TTCTGATTT 193 consensus_8003#4 GGCGGGATTGGCAAAGCAAGAGCAACATTCCCCACAAGTGAAGATTA----TATGGAACT 190 consensus_8003#0 ACAGATGCAGTGTAGGCCGGAGTCAATATTTGTCTTTGCGGTGGTGA----AGTGTGATG 234 consensus_8003#1 ACGCTTCTGCTGCACCCGGGGCCCTGTTTTTGTCAGGATGAAACTTGAGGGCATGAAGTT 218 consensus_8003#3 TGCTGCCTTCTCACAAGGAAGGAAAGGGTTAGAAAAGGTCGACCCTAAAAATGTCACACC 235 * consensus_8003#2 AAAGACTTGTTGAGTGAGTTAGTGTCCAAGACT-AGTAAGCTATGGG--AATAGCTGGGT 250 consensus_8003#4 CAAAACAACT---GTCAACTAATATCAAAGACAGAATCTTCAATATG--AACGTCAAGAC 245 consensus_8003#0 AAAACTTAAGGTATTCGAGTGACGTGGCACATTCCAACCTCTATACG--GCTGAGTGTTC 292 consensus_8003#1 TAAAAGCCTT---TTTAATTTCTTCGTCTGATGCAGTTTGCGACACTCCAAGAATTTCGT 275 consensus_8003#3 TCACCTTACCTC-ACGGATTTCCGTCTCCGACG-ATAAGGCCCTTTG--AAGAACGGAGC 291 * * * * consensus_8003#2 TGTAATAAGAGAAATTATAACACTGAGAGAAAAAGAGCGGATAATGAAATCAATAACATG 310 consensus_8003#4 AGTTCTACTATACGGACTGAAGCTTGGAAAAC---------TACCACAACCATCATCAGA 296 consensus_8003#0 CATATCGTTTGACTAGGTGAAACATATTCATTTCGT-CTATTGTCGATTCCATTCATTTG 351 consensus_8003#1 AGTAATTTTTGCAAGCCAGTACTTTCCTCAACGAAT--CTATTTGGGTTTTAGTGAATTC 333 consensus_8003#3 TAACACGTTA-AAAACCTCCCACAAGAAGGCCGTGT---GTGACCAGTCTCAAGCAGTTG 347 * consensus_8003#2 TAAAATAAATGAACAATAGACAACAAAATTCGTGG-----GTATGAC---CACCCTAGTT 362 consensus_8003#4 AAGTACAAGT-ATCTATAAACAATTATGTACACAA-----GATACTC---AATGTCCGTT 347 consensus_8003#0 GTGAATCCAT-GTCTCTAATTCACCATCTTCTAGATCATTGTCTATCGGAAATGTCTTTT 410 consensus_8003#1 CTTATCCGGTTGTTTATTTCTGGTAGATTCAGCGC------TAGGATAGGGACCTCCATT 387 consensus_8003#3 TCCCTTGGAC--TCTGCGGTCTTGCTCCTAGGTCGTTAA-GACCAACACCAATCCAACTT 404 * * ** consensus_8003#2 ATTTGGAAATTTTAG--AACACTAGTTTGAC--AATATAAAACATTAA--ATTTATTTGG 416 consensus_8003#4 GGTCGGATACCATC---AGCAACAGCCT-AC--TGTGAGAGAAGACAA--ACCA------ 393 consensus_8003#0 GTGGTGTTGTTGTTGCTGTCGATGGTATGACG-TATGCCGAAGATTCATCATCAGAACGA 469 consensus_8003#1 TTCTTGGGAACCTCT--GGTGCTAGACGAAC--GAGACCTAGGTTTCACTAAAAACTCCA 443 consensus_8003#3 CCCTTTCAGGTCCCTCAAGAAATACTCTTCCACGGTGTGGGCAGCCGG------------ 452 * consensus_8003#2 ACTTTCAACTTAAGGAAACCGTTAATGGACAAACCAACAGTTTAATGAACCC-------- 468 consensus_8003#4 ------------------------------------------------------------ consensus_8003#0 AGGATCCTATATCCTTCGCTACCAACAGCCGGTTTTA-AGCCAAATAAATTTGAAACTTT 528 consensus_8003#1 GTCCTTCTATGTTGACTGACGGATCCAATCTCAT-------------------------- 477 consensus_8003#3 ------------------------------------------------------------ consensus_8003#2 ------------------- consensus_8003#4 ------------------- consensus_8003#0 ATTCTGATAAGTTGGTATC 547 consensus_8003#1 ------------------- consensus_8003#3 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||