cluster # 8003

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Schistosoma mansoni
cluster # 8003 cluster # 8003 Sequences # 6 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8003#0 length = 547 sequences # 2
consensus_8003#1 length = 477 sequences # 1

consensus_8003#2 length = 468 sequences # 1
consensus_8003#3 length = 452 sequences # 1
consensus_8003#4 length = 393 sequences # 1

consensusID : consensus_8003#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 547
fasta sequence

                              [TCCACCACTGCAACCTCCACCATAGCTGCCGCCACAGTCACCACCAGTGTACCTATTCTTTCGAATAATATCTACCGGTGGCCCGAGGCTAGGTCTTTGTGTAGGAAAGTTGGTTTGTTGTGTTGTGAAAGCACTTGAGTAACTAGTTGAAAATGAATTCCTTCTATTCTGATATGGAACAGATGCAGTGTAGGCCGGAGTCAATATTTGTCTTTGCGGTGGTGAAGTGTGATGAAAACTTAAGGTATTCGAGTGACGTGGCACATTCCAACCTCTATACGGCTGAGTGTTCCATATCGTTTGACTAGGTGAAACATATTCATTTCGTCTATTGTCGATTCCATTCATTTGGTGAATCCATGTCTCTAATTCACCATCTTCTAGATCATTGTCTATCGGAAATGTCTTTTGTGGTGTTGTTGTTGCTGTCGATGGTATGACGTATGCCGAAGATTCATCATCAGAACGAAGGATCCTATATCCTTCGCTACCAACAGCCGGTTTTAAGCCAAATAAATTTGAAACTTTATTCTGATAAGTTGGTATC]

[+] EMBL CD061539             [TCCACCACTGCAACCTCCACCATAGCTGCCGCCACAGTCACCACCAGTGTACCTATTCTTTCGAATAATATCTACCGGTGGCCCGAGGCTAGGTCTTTGTGTAGGAAAGTTGGTTTGTTGTGTTGTGAAAGCACTTGAGTAACTAGTTGAAAATGAATTCCTTCTATTCTGATATGGAACAGATGCAGTGTAGGCCGGA                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD084000             [                                                                                                                                        GAGTAACTAGTTGAAAATGAATTCCTTCTATTCTGATATGGAACAGATGCAGTGTAGGCCGGAGTCAATATTTGTCTTTGCGGTGGTGAAGTGTGATGAAAACTTAAGGTATTCGAGTGACGTGGCACATTCCAACCTCTATACGGCTGAGTGTTCCATATCGTTTGACTAGGTGAAACATATTCATTTCGTCTATTGTCGATTCCATTCATTTGGTGAATCCATGTCTCTAATTCACCATCTTCTAGATCATTGTCTATCGGAAATGTCTTTTGTGGTGTTGTTGTTGCTGTCGATGGTATGACGTATGCCGAAGATTCATCATCAGAACGAAGGATCCTATATCCTTCGCTACCAACAGCCGGTTTTAAGCCAAATAAATTTGAAACTTTATTCTGATAAGTTGGTATC]




>consensus_8003#0
TCCACCACTGCAACCTCCACCATAGCTGCCGCCACAGTCACCACCAGTGTACCTATTCTT
TCGAATAATATCTACCGGTGGCCCGAGGCTAGGTCTTTGTGTAGGAAAGTTGGTTTGTTG
TGTTGTGAAAGCACTTGAGTAACTAGTTGAAAATGAATTCCTTCTATTCTGATATGGAAC
AGATGCAGTGTAGGCCGGAGTCAATATTTGTCTTTGCGGTGGTGAAGTGTGATGAAAACT
TAAGGTATTCGAGTGACGTGGCACATTCCAACCTCTATACGGCTGAGTGTTCCATATCGT
TTGACTAGGTGAAACATATTCATTTCGTCTATTGTCGATTCCATTCATTTGGTGAATCCA
TGTCTCTAATTCACCATCTTCTAGATCATTGTCTATCGGAAATGTCTTTTGTGGTGTTGT
TGTTGCTGTCGATGGTATGACGTATGCCGAAGATTCATCATCAGAACGAAGGATCCTATA
TCCTTCGCTACCAACAGCCGGTTTTAAGCCAAATAAATTTGAAACTTTATTCTGATAAGT
TGGTATC

consensusID : consensus_8003#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [AAACATGGTGAAGACATCAGCATCATATTGGAAGAACGTGTCCCCGTGTCGATGAACTTGAGGTGACCTGACTTGCTCTTCTTCCGCACCATATTGGTCATAACTGTTTCCTGTATGAAAATCTGTCAACACTTCGTACGCCTTCTTGATTTTTTTAAACGCTTCTGCTGCACCCGGGGCCCTGTTTTTGTCAGGATGAAACTTGAGGGCATGAAGTTTAAAAGCCTTTTTAATTTCTTCGTCTGATGCAGTTTGCGACACTCCAAGAATTTCGTAGTAATTTTTGCAAGCCAGTACTTTCCTCAACGAATCTATTTGGGTTTTAGTGAATTCCTTATCCGGTTGTTTATTTCTGGTAGATTCAGCGCTAGGATAGGGACCTCCATTTTCTTGGGAACCTCTGGTGCTAGACGAACGAGACCTAGGTTTCACTAAAAACTCCAGTCCTTCTATGTTGACTGACGGATCCAATCTCAT]

[+] EMBL CD202107             [AAACATGGTGAAGACATCAGCATCATATTGGAAGAACGTGTCCCCGTGTCGATGAACTTGAGGTGACCTGACTTGCTCTTCTTCCGCACCATATTGGTCATAACTGTTTCCTGTATGAAAATCTGTCAACACTTCGTACGCCTTCTTGATTTTTTTAAACGCTTCTGCTGCACCCGGGGCCCTGTTTTTGTCAGGATGAAACTTGAGGGCATGAAGTTTAAAAGCCTTTTTAATTTCTTCGTCTGATGCAGTTTGCGACACTCCAAGAATTTCGTAGTAATTTTTGCAAGCCAGTACTTTCCTCAACGAATCTATTTGGGTTTTAGTGAATTCCTTATCCGGTTGTTTATTTCTGGTAGATTCAGCGCTAGGATAGGGACCTCCATTTTCTTGGGAACCTCTGGTGCTAGACGAACGAGACCTAGGTTTCACTAAAAACTCCAGTCCTTCTATGTTGACTGACGGATCCAATCTCAT]




>consensus_8003#1
AAACATGGTGAAGACATCAGCATCATATTGGAAGAACGTGTCCCCGTGTCGATGAACTTG
AGGTGACCTGACTTGCTCTTCTTCCGCACCATATTGGTCATAACTGTTTCCTGTATGAAA
ATCTGTCAACACTTCGTACGCCTTCTTGATTTTTTTAAACGCTTCTGCTGCACCCGGGGC
CCTGTTTTTGTCAGGATGAAACTTGAGGGCATGAAGTTTAAAAGCCTTTTTAATTTCTTC
GTCTGATGCAGTTTGCGACACTCCAAGAATTTCGTAGTAATTTTTGCAAGCCAGTACTTT
CCTCAACGAATCTATTTGGGTTTTAGTGAATTCCTTATCCGGTTGTTTATTTCTGGTAGA
TTCAGCGCTAGGATAGGGACCTCCATTTTCTTGGGAACCTCTGGTGCTAGACGAACGAGA
CCTAGGTTTCACTAAAAACTCCAGTCCTTCTATGTTGACTGACGGATCCAATCTCAT

consensusID : consensus_8003#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [GAAGAACCCCCGCGTTGGAACCCGACGGAAAGGCCCAGGACAGAGTGGATTGGAGAATGCTGGTCGGCGGCTTATGCTTCATTGGGAGTAACAGGCGTAAGTAAGTAAGTAATCTCTTATTGTTCTTCTTACATCTATCTACCTCTTGTTATTCGGGACATAATTTCTTTACTGTTCAACCGTATTCTGATTTAAAGACTTGTTGAGTGAGTTAGTGTCCAAGACTAGTAAGCTATGGGAATAGCTGGGTTGTAATAAGAGAAATTATAACACTGAGAGAAAAAGAGCGGATAATGAAATCAATAACATGTAAAATAAATGAACAATAGACAACAAAATTCGTGGGTATGACCACCCTAGTTATTTGGAAATTTTAGAACACTAGTTTGACAATATAAAACATTAAATTTATTTGGACTTTCAACTTAAGGAAACCGTTAATGGACAAACCAACAGTTTAATGAACCC]

[+] EMBL CD059669             [GAAGAACCCCCGCGTTGGAACCCGACGGAAAGGCCCAGGACAGAGTGGATTGGAGAATGCTGGTCGGCGGCTTATGCTTCATTGGGAGTAACAGGCGTAAGTAAGTAAGTAATCTCTTATTGTTCTTCTTACATCTATCTACCTCTTGTTATTCGGGACATAATTTCTTTACTGTTCAACCGTATTCTGATTTAAAGACTTGTTGAGTGAGTTAGTGTCCAAGACTAGTAAGCTATGGGAATAGCTGGGTTGTAATAAGAGAAATTATAACACTGAGAGAAAAAGAGCGGATAATGAAATCAATAACATGTAAAATAAATGAACAATAGACAACAAAATTCGTGGGTATGACCACCCTAGTTATTTGGAAATTTTAGAACACTAGTTTGACAATATAAAACATTAAATTTATTTGGACTTTCAACTTAAGGAAACCGTTAATGGACAAACCAACAGTTTAATGAACCC]




>consensus_8003#2
GAAGAACCCCCGCGTTGGAACCCGACGGAAAGGCCCAGGACAGAGTGGATTGGAGAATGC
TGGTCGGCGGCTTATGCTTCATTGGGAGTAACAGGCGTAAGTAAGTAAGTAATCTCTTAT
TGTTCTTCTTACATCTATCTACCTCTTGTTATTCGGGACATAATTTCTTTACTGTTCAAC
CGTATTCTGATTTAAAGACTTGTTGAGTGAGTTAGTGTCCAAGACTAGTAAGCTATGGGA
ATAGCTGGGTTGTAATAAGAGAAATTATAACACTGAGAGAAAAAGAGCGGATAATGAAAT
CAATAACATGTAAAATAAATGAACAATAGACAACAAAATTCGTGGGTATGACCACCCTAG
TTATTTGGAAATTTTAGAACACTAGTTTGACAATATAAAACATTAAATTTATTTGGACTT
TCAACTTAAGGAAACCGTTAATGGACAAACCAACAGTTTAATGAACCC

consensusID : consensus_8003#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence

                              [AGCTATATTGGCTGGAACATATGTTTCTGTAGGTTCTACCATGCCAGGCAGGTCGATTGGAGAACAGTAAGACTAAAAGCAACGACTCAAGGTCTGAGGGCGAAGTCGTACGGCTGACTGTAGAGGGTTGTGACAGCAGTAAGGTGTTTCCCTCGGACAACCAGCATAACAGCGATGCTGCCTTCTCACAAGGAAGGAAAGGGTTAGAAAAGGTCGACCCTAAAAATGTCACACCTCACCTTACCTCACGGATTTCCGTCTCCGACGATAAGGCCCTTTGAAGAACGGAGCTAACACGTTAAAAACCTCCCACAAGAAGGCCGTGTGTGACCAGTCTCAAGCAGTTGTCCCTTGGACTCTGCGGTCTTGCTCCTAGGTCGTTAAGACCAACACCAATCCAACTTCCCTTTCAGGTCCCTCAAGAAATACTCTTCCACGGTGTGGGCAGCCGG]

[+] EMBL CD161411             [AGCTATATTGGCTGGAACATATGTTTCTGTAGGTTCTACCATGCCAGGCAGGTCGATTGGAGAACAGTAAGACTAAAAGCAACGACTCAAGGTCTGAGGGCGAAGTCGTACGGCTGACTGTAGAGGGTTGTGACAGCAGTAAGGTGTTTCCCTCGGACAACCAGCATAACAGCGATGCTGCCTTCTCACAAGGAAGGAAAGGGTTAGAAAAGGTCGACCCTAAAAATGTCACACCTCACCTTACCTCACGGATTTCCGTCTCCGACGATAAGGCCCTTTGAAGAACGGAGCTAACACGTTAAAAACCTCCCACAAGAAGGCCGTGTGTGACCAGTCTCAAGCAGTTGTCCCTTGGACTCTGCGGTCTTGCTCCTAGGTCGTTAAGACCAACACCAATCCAACTTCCCTTTCAGGTCCCTCAAGAAATACTCTTCCACGGTGTGGGCAGCCGG]




>consensus_8003#3
AGCTATATTGGCTGGAACATATGTTTCTGTAGGTTCTACCATGCCAGGCAGGTCGATTGG
AGAACAGTAAGACTAAAAGCAACGACTCAAGGTCTGAGGGCGAAGTCGTACGGCTGACTG
TAGAGGGTTGTGACAGCAGTAAGGTGTTTCCCTCGGACAACCAGCATAACAGCGATGCTG
CCTTCTCACAAGGAAGGAAAGGGTTAGAAAAGGTCGACCCTAAAAATGTCACACCTCACC
TTACCTCACGGATTTCCGTCTCCGACGATAAGGCCCTTTGAAGAACGGAGCTAACACGTT
AAAAACCTCCCACAAGAAGGCCGTGTGTGACCAGTCTCAAGCAGTTGTCCCTTGGACTCT
GCGGTCTTGCTCCTAGGTCGTTAAGACCAACACCAATCCAACTTCCCTTTCAGGTCCCTC
AAGAAATACTCTTCCACGGTGTGGGCAGCCGG

consensusID : consensus_8003#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence

                              [TAAAGGAAAAAGCAAGATCCTCGAATGCAACACGGAGAACACCAACACAATCACACTTGATAGAGAAGTCCTGGAAGGGGTAGAATCTTTCACGTACCTAGGCAGCATCAAGAAGGATCTGATGCAGATGTAAAGGCGGGATTGGCAAAGCAAGAGCAACATTCCCCACAAGTGAAGATTATATGGAACTCAAAACAACTGTCAACTAATATCAAAGACAGAATCTTCAATATGAACGTCAAGACAGTTCTACTATACGGACTGAAGCTTGGAAAACTACCACAACCATCATCAGAAAGTACAAGTATCTATAAACAATTATGTACACAAGATACTCAATGTCCGTTGGTCGGATACCATCAGCAACAGCCTACTGTGAGAGAAGACAAACCA]

[+] EMBL CD092976             [TAAAGGAAAAAGCAAGATCCTCGAATGCAACACGGAGAACACCAACACAATCACACTTGATAGAGAAGTCCTGGAAGGGGTAGAATCTTTCACGTACCTAGGCAGCATCAAGAAGGATCTGATGCAGATGTAAAGGCGGGATTGGCAAAGCAAGAGCAACATTCCCCACAAGTGAAGATTATATGGAACTCAAAACAACTGTCAACTAATATCAAAGACAGAATCTTCAATATGAACGTCAAGACAGTTCTACTATACGGACTGAAGCTTGGAAAACTACCACAACCATCATCAGAAAGTACAAGTATCTATAAACAATTATGTACACAAGATACTCAATGTCCGTTGGTCGGATACCATCAGCAACAGCCTACTGTGAGAGAAGACAAACCA]




>consensus_8003#4
TAAAGGAAAAAGCAAGATCCTCGAATGCAACACGGAGAACACCAACACAATCACACTTGA
TAGAGAAGTCCTGGAAGGGGTAGAATCTTTCACGTACCTAGGCAGCATCAAGAAGGATCT
GATGCAGATGTAAAGGCGGGATTGGCAAAGCAAGAGCAACATTCCCCACAAGTGAAGATT
ATATGGAACTCAAAACAACTGTCAACTAATATCAAAGACAGAATCTTCAATATGAACGTC
AAGACAGTTCTACTATACGGACTGAAGCTTGGAAAACTACCACAACCATCATCAGAAAGT
ACAAGTATCTATAAACAATTATGTACACAAGATACTCAATGTCCGTTGGTCGGATACCAT
CAGCAACAGCCTACTGTGAGAGAAGACAAACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8003#2      -------------------------------GAAGAACCCCCGCGTTGGAACCCGA-C-- 26
consensus_8003#4      --------------------------TAAAGGAAAAAGCAAGATCCTCGAATGCAA-CA- 32
consensus_8003#0      TCCACCACTGCAACCTCCACCATAGCTGCCGCCACAGTCACCACCAGTGTACCTAT-TCT 59
consensus_8003#1      ------------------AAACATGGTGAAGACATCAGCATCATATTGGAAGAACG-TGT 41
consensus_8003#3      -----AGCTATATTGGCTGGAACATATGTTTCTGTAGGTTCTACCATGCCAGGCAGGTCG 55
                                                                        *         

consensus_8003#2      ---GGAAAGGCCCAGGACAG----AGTGGATTGGAGAATGCTGGTCGGCGGCTTATGCTT 79
consensus_8003#4      --CGGAGAACACCAACACAATCACACTTGATAGAGAAGTCCTGGAAGGGGTAGAATCTTT 90
consensus_8003#0      TTCGAATAATATCTAC-CGGTGGCCCGAGGCTAGGTCTTTGTGTAGGAAAGTTGGTTTGT 118
consensus_8003#1      CCCCGTGTCGATGAACTTGAGGTGACCTGACTTGCTCTTCTT---CCGCACCATATTGGT 98
consensus_8003#3      ATTGGAGAACAGTAAGACTAAAAGCAACGACTCAAGGTCTGAGGGCGAAGTCGTACGGCT 115
                                                  *                              *

consensus_8003#2      CATTGGGAGTAAC-AGGC-GTAAGTAAGTAAGTAATCTCTTATTGTTCTTCTTACATCTA 137
consensus_8003#4      CAC-----GTACCTAGGC-AGCATCAAGAAGG--ATCTGATGCAG--------ATGTAAA 134
consensus_8003#0      TGTGTTGTGAAAGCACTTGAGTAACTAGTTGAAAATGAATTCCTTCTATTCTGATATGGA 178
consensus_8003#1      CATAACTGTTTCCTGTATGAAAATCTGTCAACACTTCGTACGCCTTCTTGATTTTTTTAA 158
consensus_8003#3      GACTGTAGAGGGTTGTGACAGCAGTAAGGTGTTTCCCTCGGACAACCAGCATAACAGCGA 175
                                            *                                    *

consensus_8003#2      TCTACCTCTTGTTATTCGGGACATAATTTCTTTACTGTTCAACCGTA----TTCTGATTT 193
consensus_8003#4      GGCGGGATTGGCAAAGCAAGAGCAACATTCCCCACAAGTGAAGATTA----TATGGAACT 190
consensus_8003#0      ACAGATGCAGTGTAGGCCGGAGTCAATATTTGTCTTTGCGGTGGTGA----AGTGTGATG 234
consensus_8003#1      ACGCTTCTGCTGCACCCGGGGCCCTGTTTTTGTCAGGATGAAACTTGAGGGCATGAAGTT 218
consensus_8003#3      TGCTGCCTTCTCACAAGGAAGGAAAGGGTTAGAAAAGGTCGACCCTAAAAATGTCACACC 235
                                                  *                               

consensus_8003#2      AAAGACTTGTTGAGTGAGTTAGTGTCCAAGACT-AGTAAGCTATGGG--AATAGCTGGGT 250
consensus_8003#4      CAAAACAACT---GTCAACTAATATCAAAGACAGAATCTTCAATATG--AACGTCAAGAC 245
consensus_8003#0      AAAACTTAAGGTATTCGAGTGACGTGGCACATTCCAACCTCTATACG--GCTGAGTGTTC 292
consensus_8003#1      TAAAAGCCTT---TTTAATTTCTTCGTCTGATGCAGTTTGCGACACTCCAAGAATTTCGT 275
consensus_8003#3      TCACCTTACCTC-ACGGATTTCCGTCTCCGACG-ATAAGGCCCTTTG--AAGAACGGAGC 291
                        *                *          *         *                   

consensus_8003#2      TGTAATAAGAGAAATTATAACACTGAGAGAAAAAGAGCGGATAATGAAATCAATAACATG 310
consensus_8003#4      AGTTCTACTATACGGACTGAAGCTTGGAAAAC---------TACCACAACCATCATCAGA 296
consensus_8003#0      CATATCGTTTGACTAGGTGAAACATATTCATTTCGT-CTATTGTCGATTCCATTCATTTG 351
consensus_8003#1      AGTAATTTTTGCAAGCCAGTACTTTCCTCAACGAAT--CTATTTGGGTTTTAGTGAATTC 333
consensus_8003#3      TAACACGTTA-AAAACCTCCCACAAGAAGGCCGTGT---GTGACCAGTCTCAAGCAGTTG 347
                                                                         *        

consensus_8003#2      TAAAATAAATGAACAATAGACAACAAAATTCGTGG-----GTATGAC---CACCCTAGTT 362
consensus_8003#4      AAGTACAAGT-ATCTATAAACAATTATGTACACAA-----GATACTC---AATGTCCGTT 347
consensus_8003#0      GTGAATCCAT-GTCTCTAATTCACCATCTTCTAGATCATTGTCTATCGGAAATGTCTTTT 410
consensus_8003#1      CTTATCCGGTTGTTTATTTCTGGTAGATTCAGCGC------TAGGATAGGGACCTCCATT 387
consensus_8003#3      TCCCTTGGAC--TCTGCGGTCTTGCTCCTAGGTCGTTAA-GACCAACACCAATCCAACTT 404
                                                  *                      *      **

consensus_8003#2      ATTTGGAAATTTTAG--AACACTAGTTTGAC--AATATAAAACATTAA--ATTTATTTGG 416
consensus_8003#4      GGTCGGATACCATC---AGCAACAGCCT-AC--TGTGAGAGAAGACAA--ACCA------ 393
consensus_8003#0      GTGGTGTTGTTGTTGCTGTCGATGGTATGACG-TATGCCGAAGATTCATCATCAGAACGA 469
consensus_8003#1      TTCTTGGGAACCTCT--GGTGCTAGACGAAC--GAGACCTAGGTTTCACTAAAAACTCCA 443
consensus_8003#3      CCCTTTCAGGTCCCTCAAGAAATACTCTTCCACGGTGTGGGCAGCCGG------------ 452
                                                    *                             

consensus_8003#2      ACTTTCAACTTAAGGAAACCGTTAATGGACAAACCAACAGTTTAATGAACCC-------- 468
consensus_8003#4      ------------------------------------------------------------
consensus_8003#0      AGGATCCTATATCCTTCGCTACCAACAGCCGGTTTTA-AGCCAAATAAATTTGAAACTTT 528
consensus_8003#1      GTCCTTCTATGTTGACTGACGGATCCAATCTCAT-------------------------- 477
consensus_8003#3      ------------------------------------------------------------
                                                                                  

consensus_8003#2      -------------------
consensus_8003#4      -------------------
consensus_8003#0      ATTCTGATAAGTTGGTATC 547
consensus_8003#1      -------------------
consensus_8003#3      -------------------