cluster # 8007

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Schistosoma mansoni
cluster # 8007 cluster # 8007 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8007#0 length = 869 sequences # 2

consensus_8007#1 length = 860 sequences # 4

consensusID : consensus_8007#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 869
fasta sequence

                              [GAAGAAGGTGAAGTTGCCCACAGTGTCGGGAGACGTGGATGCTGGTTTGGATGTGGGTGGAAAGGTG-GATGTGCC-GAAACCACATATTTCAATCAAGGCACCGAAATTCGGGTTCGGTCTGGGCAAGAAGAAGACGAAAGTGAAGACTCCAAAGGCTGATGTGAAAGTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGAAGGGTGGTCTGAAGATTGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGGACTGACTGGGAAGGTTTGTTCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTCGGTTGGGGCTCGAAAGGCAAGAAGGCGAAGAAGGTGAAGTTGCCCACAGTGTCGGGAGACGTGGATGCTGGTTTGGATGTGGGTGGAAAGGTTGATGTTCCCAGTGTGAAGGTCGATGTGGACTCAGGTGATCGAGTCNAGGTAAGAAGTCCACTGGGTCTCGATATCACGTTGCCAAAGTTGAAAGTACATGGACCAGATGTGTCTGGAAAACTGCATGCAGACGCACCCAATATGAATTCCAAATGTACTGGTACATCTGAATTAATAATTTGGGTTGGNTCTCTATGATNTCTTCTTTTCCTTCTTCTGGGGATANTNCACCGNCTTATATTTTATCGGATGTTGCTTATCTTCCGAG]

[-] EMBL CD187350             [GAAGAAGGTGAAGTTGCCCACAGTGTCGGGAGACGTGGATGCTGGTTTGGATGTGGGTGGAAAGGTG GATGTGCC GAAACCACATATTTCAATCAAGGCACCGAAATTCGGGTTCGGTCTGGGCAAGAAGAAGACGAAAGTGAAGACTCCAAAGGCTGATGTGAAAGTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGAAGGGTGGTCTGAAGATTGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCCTCTGGGCCCGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD160656             [                                                       ctgcaAAAGGTGCGATGTGCCTGAAACCACATATTTCAATCAAGGCACCGAAATTCGGGTTCGGTCTGGGCAAGAAGAAGACGAAAGTGAAGACTCCAAAGGCTGATGTGAAAGTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGAAGGGTGGTCTGAAGATTGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGGACTGACTGGGAAGGTTTGTTCACCCGATGTAGATGTCAGTGTTCCATCAAAGAAGAAGTTCACCTTCGGTTGGGGCTCGAAAGGCAAGAAGGCGAAGAAGGTGAAGTTGCCCACAGTGTCGGGAGACGTGGATGCTGGTTTGGATGTGGGTGGAAAGGTTGATGTTCCCAGTGTGAAGGTCGATGTGGACTCAGGTGATCGAGTCNAGGTAAGAAGTCCACTGGGTCTCGATATCACGTTGCCAAAGTTGAAAGTACATGGACCAGATGTGTCTGGAAAACTGCATGCAGACGCACCCAATATGAATTCCAAATGTACTGGTACATCTGAATTAATAATTTGGGTTGGNTCTCTATGATNTCTTCTTTTCCTTCTTCTGGGGATANTNCACCGNCTTATATTTTATCGGATGTTGCTTATCTTCCGAG]




>consensus_8007#0
GAAGAAGGTGAAGTTGCCCACAGTGTCGGGAGACGTGGATGCTGGTTTGGATGTGGGTGG
AAAGGTGGATGTGCCGAAACCACATATTTCAATCAAGGCACCGAAATTCGGGTTCGGTCT
GGGCAAGAAGAAGACGAAAGTGAAGACTCCAAAGGCTGATGTGAAAGTGGAGGGTGGAGC
AGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGATGGTAAAACAAGAAA
GGGAGGTAAGAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGAAGGGTGGTCTGAAGAT
TGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCAT
GGAGGTTCCCGATGTTGATGTGTCCGCCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGC
GATTAGAGGTGGGGAGTTGGGACTGACTGGGAAGGTTTGTTCACCCGATGTAGATGTCAG
TGTTCCATCAAAGAAGAAGTTCACCTTCGGTTGGGGCTCGAAAGGCAAGAAGGCGAAGAA
GGTGAAGTTGCCCACAGTGTCGGGAGACGTGGATGCTGGTTTGGATGTGGGTGGAAAGGT
TGATGTTCCCAGTGTGAAGGTCGATGTGGACTCAGGTGATCGAGTCNAGGTAAGAAGTCC
ACTGGGTCTCGATATCACGTTGCCAAAGTTGAAAGTACATGGACCAGATGTGTCTGGAAA
ACTGCATGCAGACGCACCCAATATGAATTCCAAATGTACTGGTACATCTGAATTAATAAT
TTGGGTTGGNTCTCTATGATNTCTTCTTTTCCTTCTTCTGGGGATANTNCACCGNCTTAT
ATTTTATCGGATGTTGCTTATCTTCCGAG

consensusID : consensus_8007#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 860
fasta sequence

                              [GATGTGGGAGTTGTGGACGCCGATTTGAATCTGCCAGACCTACAGATCTCAGGTGATCGAGTCAAAGGTAAGAAGTTCCACTGGTCTCCGAATATCACGTTGCCAAAGTTGAAAGTACATGGACCAGATGTGTCTGGAAAACTTCATGCAGATGCACCTGATGTGAATGTGAATGTGACTGGTCCATCTGTGAAGGTGCCATCTGTGAAAGCCAGTGGTCATTTGCCTACTGTCGATGTGTCTGTTCCCGATGCATCGTTGGGAGGTGATCTATCCGGTAAGCTCGATTTGGAGGGTGTCGGTGTGGGAGTTGTGGACGCCGATTTGAATCTGCCAGACCTACAGATCTCAGGAAATGTGAGTGCACCGTCTGTCGAAGGAGACCTTTCCATGCCCGATGTGTCCTCCAATCTGGACACAGACGTGAAACTGCCCAGTGTGCAACTGACTGGTCCAGATCTTCGTGTACATGGTGAGATGCCGGATGTGCCGAAACCACATATTTCAATCAAGGCACCGAAATTCGGGTTCGGTCTGGGCAAGAAGAAGACGAAAGTGAAGACTCCAAAGGCTGATGTGAAAGTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGAGGTAAAAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGAAGGGTGGTCTGAAGATTGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCGCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGGAC]

[-] EMBL CD187211             [GATGTGGGAGTTGTGGACGCCGATTTGAATCTGCCAGACCTACAGATCTCAGGTGATCGAGTCAAAGGTAAGAAGTTCCACTGGTCTCCGAATATCACGTTGCCAAAGTTGAAAGTACATGGACCAGATGTGTCTGGAAAACTTCATGCAGATGCACCTGATGTGAATGTGAATGTGACTGGTCCATCTGTGAAGGTGCCATCTGTGAAAGCCAGTGGTCATTTGCCTACTGTCGATGTGTCTGTTCCCGATGCATCGTTGGGAGGTGATCTATCCGGTAAGCTCGATTTGGAGGGTGTCGGTGTGGGAGTTGTGGACGCCGATTTGAATCTGCCAGACCTACAGATCTCAGGAAATGTGAGTGCACCGTCTGTCGAAGGAGACCTTTCCATGCCCGATGTGTCCGCCAATCTGGACACAGACGT                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD086337             [                                                                                                                                                                                                                                                                                                         tcCGGTGTGGGAGTTGTGGACGCCGATTTGAATCTGCCAGACCTACAGATCTCATGAAATGTGAGTGCACCGTCTGTCGAAGGAGACCTTTCCATGCCCGATGTGTCCTCCAATCTGGACACAGACGTGAAACTGCCCAGTGTGCAACTGACTGGTCCAGATCTTCGTGTACATGGTGAGATGCCGGATGTGCCGAAACCATATATTTCAATCAAGGCACCGAAATTCGGGTTCGGTCTGGGCAAGAAGAAGACGAAAGTGAAGACTCCAAAGGCTGATGTGAAAGTGGAGGGTGGAGCAAGTGATGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGAGGTAAAAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGAAGGGTGGTCTGAAGATTGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCGCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGGAC]
[+] EMBL CD163460             [                                                                                                                                                                                                                                                                                                                                                      tgatTCTCAGGAAATGTGAGTGCACCGTCTGTCGAAGGAGACCTTTCCATGCCCGATGTGTCCTCCAATCTGGACACAGACGTGAAACTGCCCAGTGTGCAACTGACTGGTCCAGATCTTCGTGTACACGGTGAGATGCCGGATGTGCCGAAACCACATATTTCAATCAAGGCACCGAAATACGGGTTCGGTCTGGGCAAGAAGAAGACGAAAGTGAAGACTCCAAAGGCTGATGTGAAAGTGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGATAGTAAAACAAGAAAGGGAGGTAAAAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGAAGGGTGGTCTGAAGATTGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTC                                                            ]
[+] EMBL CD150430             [                                                                                                                                                                                                                                                                                                                                                                   ATGTGAGTGCACCGTCTGTCGAAGGAGACCTTTCCATGCCCGATGTGTCCTCCAATCTGGACACAGACGTGAAACTGCCCAGTGTGCAACTGACTGGTCCAGATCTTCGTGTACATGGTGAGATGCCGGATGTGCCGAAACCACATATTTCAATCAAGGCACCGAAATTCGGTTTCGGTCTGGGCAAGAAGAAGACGAAAGTGAAGACTCCAAAGGCTGATGTGAAAGTGAATGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGATGTAAAAAGTTCCATTGATCTCCTAAGTTCGGATT                                                                                                                                                                     ]




>consensus_8007#1
GATGTGGGAGTTGTGGACGCCGATTTGAATCTGCCAGACCTACAGATCTCAGGTGATCGA
GTCAAAGGTAAGAAGTTCCACTGGTCTCCGAATATCACGTTGCCAAAGTTGAAAGTACAT
GGACCAGATGTGTCTGGAAAACTTCATGCAGATGCACCTGATGTGAATGTGAATGTGACT
GGTCCATCTGTGAAGGTGCCATCTGTGAAAGCCAGTGGTCATTTGCCTACTGTCGATGTG
TCTGTTCCCGATGCATCGTTGGGAGGTGATCTATCCGGTAAGCTCGATTTGGAGGGTGTC
GGTGTGGGAGTTGTGGACGCCGATTTGAATCTGCCAGACCTACAGATCTCAGGAAATGTG
AGTGCACCGTCTGTCGAAGGAGACCTTTCCATGCCCGATGTGTCCTCCAATCTGGACACA
GACGTGAAACTGCCCAGTGTGCAACTGACTGGTCCAGATCTTCGTGTACATGGTGAGATG
CCGGATGTGCCGAAACCACATATTTCAATCAAGGCACCGAAATTCGGGTTCGGTCTGGGC
AAGAAGAAGACGAAAGTGAAGACTCCAAAGGCTGATGTGAAAGTGGAGGGTGGAGCAGGT
GAGGAGATAGATTTGGATGCCGGTTTGGACGCTCACTTAGATGGTAAAACAAGAAAGGGA
GGTAAAAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGAAGGGTGGTCTGAAGATTGGT
GGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAG
GTTCCCGATGTTGATGTGTCCGCGCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGAT
TAGAGGTGGGGAGTTGGGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8007#0      ---GAAGAAGGTGAAGTTGCCCAC---AGTGT-CGGGAGACGTGGAT----GCTGGTTTG 49
consensus_8007#1      GATGTGGGAGTTGTGGACGCCGATTTGAATCTGCCAGACCTACAGATCTCAGGTGATCGA 60
                         *  * ** **  *  *** *    * * * *  **      ***    * ** *   

consensus_8007#0      GATGTGGGTGGAAAGGTGGAT--GTGCCGAAACCACATATTTCAATCAAGGCACCGAAAT 107
consensus_8007#1      GTCAAAGGTAAGAAGTTCCACTGGTCTCCGAATATCACGTTGCCA--AAGTTGAAAGTAC 118
                      *     ***   *** *  *   **  *  **   **  ** * *  ***        * 

consensus_8007#0      TCGGGTTCGGTCTGGGCAAGAAGAAGACGAAAGTGAAGACTCCAAAGGCTGATGTGAAAG 167
consensus_8007#1      ATGGACCAGATGTGT-CTGGAAAACTTC--ATGCAGATGCACCTGATGTGAATGTGAATG 175
                        **    * * **  *  *** *   *  * *   *  * **  * *   ******* *

consensus_8007#0      TGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATGCCGGT--TTGGACGCTCACT-TAG 224
consensus_8007#1      TGACTGGTCCATCTGTGAAGGTGCCATCTGTGAAAGCCAGTGGTCATTTGCCTACTGTCG 235
                      **   ***  * * *   *** *  *  * ** * *** **  *     **  *** * *

consensus_8007#0      ATG-GTAAAACAAGAAAGGGAGGTAAGAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCG 283
consensus_8007#1      ATGTGTCTGTTCCCGATGCATCGTTGGGAGGTG-ATCTATCCGGTAAGCTCGATTTGGAG 294
                      *** **         * *    **  * ** *  **   **   **** ***  ***  *

consensus_8007#0      AAGGGTGGTCTGAAGATTGGTGGAGGTGCTGATGGTGTG---GATGTATC--TCTTCCGA 338
consensus_8007#1      GGTGTCGGTGTGGGAGTTGTGGACGCCGATTTGAATCTGCCAGACCTACAGATCTCAGGA 354
                         *  *** **    ***  *  *  * *     * **   **  **    ***   **

consensus_8007#0      AACCCGAACTCGATGTCT--CCATGGAGG--TTCCCGATGTTGATGTGTCCGCC--TCTG 392
consensus_8007#1      AATGTGAGTGCACCGTCTGTCGAAGGAGACCTTTCCATGCCCGATGTGTCCTCCAATCTG 414
                      **   **   *   ****  * * ****   ** **      ********* **  ****

consensus_8007#0      GGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGA-GGTGGGGAGTTGGGACTGACTGGG 451
consensus_8007#1      GACACAGACGTGAAACTGCCCAGTGTGCAACTGACTGGTCCAGATCTTCGTGTACATGGT 474
                      * * *  *   *      *     **** * *    ***   **  *  *  *   *** 

consensus_8007#0      AAGGTTTGTTCACCCGATGTAGATGTCAGTGTTCCATCAAAGAA--GAAGTTCACCTTCG 509
consensus_8007#1      GAGA--TGCCGGATGTGCCGAAACCACATATTTCAATCAAGGCACCGAAATTCGGGTTCG 532
                       **   **            * *   **   *** ***** * *  *** ***   ****

consensus_8007#0      GTTGGGGCTCGAAAGGCAAGAAGGCGAAGAAGGTGAAGTTGCCCACAGTGTCGGGAGACG 569
consensus_8007#1      GTCTGGGC---------AAGAAGAAGACGAAAGTGAAGACTCCAAAGGCTGATGTGAAAG 583
                      **  ****         ******  ** *** ******   ** *  *     *   * *

consensus_8007#0      TGGATGCTGGTTTGGATGTGGGTGGAAAGGTTGATGTTCCCAGTGTGAAGGTCGATGTGG 629
consensus_8007#1      TGGAGGGTGGAGCAGGTGAGGAGATAGATTTGGATG---CCGGTTTGGACGCTCACTTAG 640
                      **** * ***    * ** **    * *  * ****   ** ** ** * *   *  * *

consensus_8007#0      ACT-CAGGTGATCGAGTCNAGGTAAGAAGTCCACTGGGTCTC--GATATCACGTTGCCAA 686
consensus_8007#1      ATGGTAAAACAAGAAAGGGAGGTAAAAAGTTCCATTGGTCTCCTAAGTTCGGGTTGCCGA 700
                      *    *    *   *    ****** **** *  * ******   *  **  ****** *

consensus_8007#0      AGTTGAAAGTACATGGACCAGATGTGTCTGGAAAACTGCATGCAGACGCACCCAATATGA 746
consensus_8007#1      AG--GGTGGTCTGAAGATT-GGTGGAGGTGCTGA--TG-GTGTGGATGTATCTCTTCCGA 754
                      **  *   **     **   * **    **   *  **  **  ** * * *   *  **

consensus_8007#0      ATTCCAAATGTACTGGTACATCTGAATTAATAATTTGGGTTGGNTCTCTATGATNTCTTC 806
consensus_8007#1      AACCCGAAC---TCGATGTCTCC---------ATGGAGGTTCCCGATGT-TGATGTGTCC 801
                      *  ** **      * *   **          **   ****     * * **** * * *

consensus_8007#0      TTTTCCTTCTTCTGGGGATANTNCACCGNCTTATATTTTATCGGATGTTGCTTATCTTCC 866
consensus_8007#1      GCGCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGGAC- 860
                           **    * *       *  * *   *  *    *    * **  *  *     * 

consensus_8007#0      GAG 869
consensus_8007#1      ---