These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8012#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1274 fasta sequence [TGATTTTTTAAGTTTATATTTGGATTGCAATAATAAGCACCGGTCTCTTGAACTGCTTTGATTACATCATTGACCATCGCATGATATCTAACATCAATATCAGAATGATGAGTTGATTTTCCATTTTTTTCACTATCCAAACTTGGATTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACCGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCACTGAAACTAACAC-TTTTTTTCGGTAGTCAATTCAAAGTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTGTTGCAATCATTATTCTGATGTTCGTTAGATCTTCGAGTAGTAGAAGTAGCACCAATCCATGATGAATTACTATCGACTGATCCATACATTGGTTGATTAACTTTACTAGAAGAAATTGAACTGTTTACTAAATCCGGTTCAGACGACGAACAACGTTCAATGCTTTCAGGACAATGTAATCGACTCTGGGTTGTCGTCTGTATTTCTGTACGAGTATTGACATCATTTGAGTTTGGTCTACTGATGGTGGATATGATATCTGGAGTGTTTCTTTGTTCATTATCTTTAAAGTTACGACAGAGGGTTTTATTTTGGTCACATTGTATTTCACATGTTTGCATCTTGGATGATTTATCTGAACATGTACCTTTAGAGGAAACGCGACCAGCAGATGTAAATCGACATCCACACTTGGTACAAGTGCATTTTTTCTTTGACTATGTAGTTGACAAGCAAGAAGCTCGACGTTTGGTCATAGTTGGTGTACCTTTACGATCTTCTTCAGCGCCAGCTTGACTTAAGAATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGGCCGAGGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGATCCAACCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATATGGTGAGTCTGGTCCTGCAGATGCTGTAAGACAGGCAGCAATAGTAGGAGGCTCGATGGGGGACGGTGACTGTTGAATATTATTTCTTTCGTTCCTCTTAGGATTGATATGACAATGAAGTGCAGACATCGGCCTACTTAAATAAAGCGGCTGAGGATGGCTATGACGTACGGTACAATTATTGGCGTACGCAGCAGAACTCCC] [-] EMBL CD129808 [TGATTTTTTAAGTTTATATTTGGATTGCAATAATAAGCACCGGTCTCTTGAACTGCTTTGATTACATCATTGACCATCGCATGATATCTAACATCAATATCAGAATGATGAGTTGATTTTCCATTTTTTTCACTATCCAAACTTGGATTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACCGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCACTGAAACTAACACTTTTTTTTCGGTAGTCAATTCAAAGTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTGTTGCAATCATT ] [+] EMBL CD161158 [ GCAACGGTCTCTTGAACTGCTTTGATTACATCATTGACCATCGCATGATATCTAACATCAATATCAGAATGATGAGTTGATTTTCCATTTTTTTCACTATCCAAACTTGGACTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACCGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAACGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCACTGAAACTAACGC TTTTTTTCGGTCGTGAATTCAAACTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTGTTGCAATCATTATTCTGATGTTCGTTAGATCTTCGAGTAGTAGAAGTAGCACCAATCCATGATGAATTACTATCGACTGATCCATACATTGGTTGATTAACTTTACTAGAAGAAATTGAACTGTTTACTAAATCCGGTTCAGACGACGAACAACGTTCAATGCTTTCAGGACAATGTAATCGACTCTGGGTTGTCGTCTGTATTTCTGTACGAGTATTGACATCATTTGAGTTTGGTCTACTGAT ] [+] EMBL CD069860 [ ATCGACTCTGGGTTGTCGTCTGTATTTCTGTACCAGTATTGACATCATTTGAGTTTGGTCTACTGATGGTGGATATGATATCTGGAGTGTTTCTTTGTTCATTATCTTTAAAGTTACGACAGAGGGTTTTATTTTGGTCACATTGTATTTCACATGTTTGCATCTTGGATGATTTATCTGAACATGTACCTTTAGAGGAAACGCGACCAGCAGATGTAAATCGACATCCACACTTGGTACATGTGCATTTTTTCTTTGACTGTGTAGTTGACAAGCAAGAAGCTCGACGTTTGGTCATAGTTGGTGCCTTTTTACGATCTTCTTCAGCGCCAGCTTGACTTAAGAATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGGCCGAGGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGATCCAACCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATAT ] [+] EMBL CD158220 [ TTGGTACAAGTGCATTTTTTCTTTGACTATGTAGTTGACAAGCAAGAAGCTCGACGTTTGGTCATAGTTGGTGTACCTTTACGATCTTCTTCAGCGCCAGCTTGACTTAAGAATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGGCCGAGGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGATCCAACCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATATGGTGAGTCTGGTCCTGCAGATGCTGTAAGACAGGCAGCAATAGTAGGAGGCTCGATGGGGGACGGTGACTGTTGAATATTATTTCTTTCGTTCCTCTTAGGATTGATATGACAATGAAGTGCAGACATCGGCCTACTTAAATAAAGCGGCTGAGGATGGCTATGACGTACGGTACAATTATTGGCGTACGCAGCAGAACTCCC] [+] EMBL CD158205 [ TTGGTACAAGTGCATTTTTTCTTTGACTATGTAGTTGACAAGCAAGAAGCTCGACGTTTGGTCATAGTTGGTGTACCTTTACGATCTTCTTCAGCGCCAGCTTGACTTAAGAATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGGCCGAGGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGATCCAACCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATATGGTGAGTCTGGTCCTGCAGATGCTGTAAGACAGGCAGCAATAGTAGGAGGCTCGATGGGGGACGGTGACTGTTGAATATTACTTCTTTCATTCCTCTTAGGATTGATATGACAATGAAGTGCAGACATCGGCCT ] consensusID : consensus_8012#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [AACTTGGACTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACAGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCTCTGAAACTAACACTTTTTTTTCGGTCGTGAATTCAAACTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTGTTGCAATCATTATTTTGATGGGCCGCATTGGGT] [-] EMBL CD129807 [AACTTGGACTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACAGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCTCTGAAACTAACACTTTTTTTTCGGTCGTGAATTCAAACTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTGTTGCAATCATTATTTTGATGGGCCGCATTGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8012#0 TGATTTTTTAAGTTTATATTTGGATTGCAATAATAAGCACCGGTCTCTTGAACTGCTTTG 60 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 ATTACATCATTGACCATCGCATGATATCTAACATCAATATCAGAATGATGAGTTGATTTT 120 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 CCATTTTTTTCACTATCCAAACTTGGATTACATCGTGGATTAAATTCAGCCAATGGTTGT 180 consensus_8012#1 -------------------AACTTGGACTACATCGTGGATTAAATTCAGCCAATGGTTGT 41 ******** ******************************** consensus_8012#0 TCTTGACCGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTT 240 consensus_8012#1 TCTTGACAGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTT 101 ******* **************************************************** consensus_8012#0 GATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTC 300 consensus_8012#1 GATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTC 161 ************************************************************ consensus_8012#0 CCACTGAAACTAACACTTTTTTT-CGGTAGTCAATTCAAAGTAAGTGATTCGTCCATTTC 359 consensus_8012#1 CCTCTGAAACTAACACTTTTTTTTCGGTCGTGAATTCAAACTAAGTGATTCGTCCATTTC 221 ** ******************** **** ** ******** ******************* consensus_8012#0 CGATGCATTCTTGTTATTGTTGCAATCATTATTCTGATG---TTCGTTAGATCTTCGAGT 416 consensus_8012#1 CGATGCATTCTTGTTATTGTTGCAATCATTATTTTGATGGGCCGCATTGGGT-------- 273 ********************************* ***** * ** * * consensus_8012#0 AGTAGAAGTAGCACCAATCCATGATGAATTACTATCGACTGATCCATACATTGGTTGATT 476 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 AACTTTACTAGAAGAAATTGAACTGTTTACTAAATCCGGTTCAGACGACGAACAACGTTC 536 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 AATGCTTTCAGGACAATGTAATCGACTCTGGGTTGTCGTCTGTATTTCTGTACGAGTATT 596 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 GACATCATTTGAGTTTGGTCTACTGATGGTGGATATGATATCTGGAGTGTTTCTTTGTTC 656 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 ATTATCTTTAAAGTTACGACAGAGGGTTTTATTTTGGTCACATTGTATTTCACATGTTTG 716 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 CATCTTGGATGATTTATCTGAACATGTACCTTTAGAGGAAACGCGACCAGCAGATGTAAA 776 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 TCGACATCCACACTTGGTACAAGTGCATTTTTTCTTTGACTATGTAGTTGACAAGCAAGA 836 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 AGCTCGACGTTTGGTCATAGTTGGTGTACCTTTACGATCTTCTTCAGCGCCAGCTTGACT 896 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 TAAGAATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGG 956 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 CCGAGGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGAT 1016 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 CCAACCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATATGGTGA 1076 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 GTCTGGTCCTGCAGATGCTGTAAGACAGGCAGCAATAGTAGGAGGCTCGATGGGGGACGG 1136 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 TGACTGTTGAATATTATTTCTTTCGTTCCTCTTAGGATTGATATGACAATGAAGTGCAGA 1196 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 CATCGGCCTACTTAAATAAAGCGGCTGAGGATGGCTATGACGTACGGTACAATTATTGGC 1256 consensus_8012#1 ------------------------------------------------------------ consensus_8012#0 GTACGCAGCAGAACTCCC 1274 consensus_8012#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||