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Schistosoma mansoni
cluster # 8012 cluster # 8012       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8012#0 length = 1274 sequences # 5  
consensus_8012#1 length = 273 sequences # 1  

consensusID : consensus_8012#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1274
fasta sequence
                              [TGATTTTTTAAGTTTATATTTGGATTGCAATAATAAGCACCGGTCTCTTGAACTGCTTTGATTACATCATTGACCATCGCATGATATCTAACATCAATATCAGAATGATGAGTTGATTTTCCATTTTTTTCACTATCCAAACTTGGATTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACCGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCACTGAAACTAACAC-TTTTTTTCGGTAGTCAATTCAAAGTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTGTTGCAATCATTATTCTGATGTTCGTTAGATCTTCGAGTAGTAGAAGTAGCACCAATCCATGATGAATTACTATCGACTGATCCATACATTGGTTGATTAACTTTACTAGAAGAAATTGAACTGTTTACTAAATCCGGTTCAGACGACGAACAACGTTCAATGCTTTCAGGACAATGTAATCGACTCTGGGTTGTCGTCTGTATTTCTGTACGAGTATTGACATCATTTGAGTTTGGTCTACTGATGGTGGATATGATATCTGGAGTGTTTCTTTGTTCATTATCTTTAAAGTTACGACAGAGGGTTTTATTTTGGTCACATTGTATTTCACATGTTTGCATCTTGGATGATTTATCTGAACATGTACCTTTAGAGGAAACGCGACCAGCAGATGTAAATCGACATCCACACTTGGTACAAGTGCATTTTTTCTTTGACTATGTAGTTGACAAGCAAGAAGCTCGACGTTTGGTCATAGTTGGTGTACCTTTACGATCTTCTTCAGCGCCAGCTTGACTTAAGAATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGGCCGAGGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGATCCAACCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATATGGTGAGTCTGGTCCTGCAGATGCTGTAAGACAGGCAGCAATAGTAGGAGGCTCGATGGGGGACGGTGACTGTTGAATATTATTTCTTTCGTTCCTCTTAGGATTGATATGACAATGAAGTGCAGACATCGGCCTACTTAAATAAAGCGGCTGAGGATGGCTATGACGTACGGTACAATTATTGGCGTACGCAGCAGAACTCCC]

[-] EMBL CD129808             [TGATTTTTTAAGTTTATATTTGGATTGCAATAATAAGCACCGGTCTCTTGAACTGCTTTGATTACATCATTGACCATCGCATGATATCTAACATCAATATCAGAATGATGAGTTGATTTTCCATTTTTTTCACTATCCAAACTTGGATTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACCGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCACTGAAACTAACACTTTTTTTTCGGTAGTCAATTCAAAGTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTGTTGCAATCATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD161158             [                                    GCAACGGTCTCTTGAACTGCTTTGATTACATCATTGACCATCGCATGATATCTAACATCAATATCAGAATGATGAGTTGATTTTCCATTTTTTTCACTATCCAAACTTGGACTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACCGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAACGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCACTGAAACTAACGC TTTTTTTCGGTCGTGAATTCAAACTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTGTTGCAATCATTATTCTGATGTTCGTTAGATCTTCGAGTAGTAGAAGTAGCACCAATCCATGATGAATTACTATCGACTGATCCATACATTGGTTGATTAACTTTACTAGAAGAAATTGAACTGTTTACTAAATCCGGTTCAGACGACGAACAACGTTCAATGCTTTCAGGACAATGTAATCGACTCTGGGTTGTCGTCTGTATTTCTGTACGAGTATTGACATCATTTGAGTTTGGTCTACTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD069860             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATCGACTCTGGGTTGTCGTCTGTATTTCTGTACCAGTATTGACATCATTTGAGTTTGGTCTACTGATGGTGGATATGATATCTGGAGTGTTTCTTTGTTCATTATCTTTAAAGTTACGACAGAGGGTTTTATTTTGGTCACATTGTATTTCACATGTTTGCATCTTGGATGATTTATCTGAACATGTACCTTTAGAGGAAACGCGACCAGCAGATGTAAATCGACATCCACACTTGGTACATGTGCATTTTTTCTTTGACTGTGTAGTTGACAAGCAAGAAGCTCGACGTTTGGTCATAGTTGGTGCCTTTTTACGATCTTCTTCAGCGCCAGCTTGACTTAAGAATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGGCCGAGGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGATCCAACCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATAT                                                                                                                                                                                                           ]
[+] EMBL CD158220             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTGGTACAAGTGCATTTTTTCTTTGACTATGTAGTTGACAAGCAAGAAGCTCGACGTTTGGTCATAGTTGGTGTACCTTTACGATCTTCTTCAGCGCCAGCTTGACTTAAGAATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGGCCGAGGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGATCCAACCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATATGGTGAGTCTGGTCCTGCAGATGCTGTAAGACAGGCAGCAATAGTAGGAGGCTCGATGGGGGACGGTGACTGTTGAATATTATTTCTTTCGTTCCTCTTAGGATTGATATGACAATGAAGTGCAGACATCGGCCTACTTAAATAAAGCGGCTGAGGATGGCTATGACGTACGGTACAATTATTGGCGTACGCAGCAGAACTCCC]
[+] EMBL CD158205             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTGGTACAAGTGCATTTTTTCTTTGACTATGTAGTTGACAAGCAAGAAGCTCGACGTTTGGTCATAGTTGGTGTACCTTTACGATCTTCTTCAGCGCCAGCTTGACTTAAGAATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGGCCGAGGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGATCCAACCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATATGGTGAGTCTGGTCCTGCAGATGCTGTAAGACAGGCAGCAATAGTAGGAGGCTCGATGGGGGACGGTGACTGTTGAATATTACTTCTTTCATTCCTCTTAGGATTGATATGACAATGAAGTGCAGACATCGGCCT                                                                     ]


>consensus_8012#0 TGATTTTTTAAGTTTATATTTGGATTGCAATAATAAGCACCGGTCTCTTGAACTGCTTTG ATTACATCATTGACCATCGCATGATATCTAACATCAATATCAGAATGATGAGTTGATTTT CCATTTTTTTCACTATCCAAACTTGGATTACATCGTGGATTAAATTCAGCCAATGGTTGT TCTTGACCGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTT GATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTC CCACTGAAACTAACACTTTTTTTCGGTAGTCAATTCAAAGTAAGTGATTCGTCCATTTCC GATGCATTCTTGTTATTGTTGCAATCATTATTCTGATGTTCGTTAGATCTTCGAGTAGTA GAAGTAGCACCAATCCATGATGAATTACTATCGACTGATCCATACATTGGTTGATTAACT TTACTAGAAGAAATTGAACTGTTTACTAAATCCGGTTCAGACGACGAACAACGTTCAATG CTTTCAGGACAATGTAATCGACTCTGGGTTGTCGTCTGTATTTCTGTACGAGTATTGACA TCATTTGAGTTTGGTCTACTGATGGTGGATATGATATCTGGAGTGTTTCTTTGTTCATTA TCTTTAAAGTTACGACAGAGGGTTTTATTTTGGTCACATTGTATTTCACATGTTTGCATC TTGGATGATTTATCTGAACATGTACCTTTAGAGGAAACGCGACCAGCAGATGTAAATCGA CATCCACACTTGGTACAAGTGCATTTTTTCTTTGACTATGTAGTTGACAAGCAAGAAGCT CGACGTTTGGTCATAGTTGGTGTACCTTTACGATCTTCTTCAGCGCCAGCTTGACTTAAG AATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGGCCGA GGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGATCCAA CCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATATGGTGAGTCT GGTCCTGCAGATGCTGTAAGACAGGCAGCAATAGTAGGAGGCTCGATGGGGGACGGTGAC TGTTGAATATTATTTCTTTCGTTCCTCTTAGGATTGATATGACAATGAAGTGCAGACATC GGCCTACTTAAATAAAGCGGCTGAGGATGGCTATGACGTACGGTACAATTATTGGCGTAC GCAGCAGAACTCCC



consensusID : consensus_8012#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence
                              [AACTTGGACTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACAGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCTCTGAAACTAACACTTTTTTTTCGGTCGTGAATTCAAACTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTGTTGCAATCATTATTTTGATGGGCCGCATTGGGT]

[-] EMBL CD129807             [AACTTGGACTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACAGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCTCTGAAACTAACACTTTTTTTTCGGTCGTGAATTCAAACTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTGTTGCAATCATTATTTTGATGGGCCGCATTGGGT]


>consensus_8012#1 AACTTGGACTACATCGTGGATTAAATTCAGCCAATGGTTGTTCTTGACAGTATAAACCCC AATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTTGATGTATCACTGTAATGAT GATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTCCCTCTGAAACTAACACTTT TTTTTCGGTCGTGAATTCAAACTAAGTGATTCGTCCATTTCCGATGCATTCTTGTTATTG TTGCAATCATTATTTTGATGGGCCGCATTGGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8012#0      TGATTTTTTAAGTTTATATTTGGATTGCAATAATAAGCACCGGTCTCTTGAACTGCTTTG 60
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      ATTACATCATTGACCATCGCATGATATCTAACATCAATATCAGAATGATGAGTTGATTTT 120
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      CCATTTTTTTCACTATCCAAACTTGGATTACATCGTGGATTAAATTCAGCCAATGGTTGT 180
consensus_8012#1      -------------------AACTTGGACTACATCGTGGATTAAATTCAGCCAATGGTTGT 41
                                         ******** ********************************

consensus_8012#0      TCTTGACCGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTT 240
consensus_8012#1      TCTTGACAGTATAAACCCCAATTTCGTGGGATCACTTTGGGTTCAGGAGATTGTTGTGTT 101
                      ******* ****************************************************

consensus_8012#0      GATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTC 300
consensus_8012#1      GATGTATCACTGTAATGATGATGAGAATCTTTGGAATTCAATTGTAATAAACGAATATTC 161
                      ************************************************************

consensus_8012#0      CCACTGAAACTAACACTTTTTTT-CGGTAGTCAATTCAAAGTAAGTGATTCGTCCATTTC 359
consensus_8012#1      CCTCTGAAACTAACACTTTTTTTTCGGTCGTGAATTCAAACTAAGTGATTCGTCCATTTC 221
                      ** ******************** **** ** ******** *******************

consensus_8012#0      CGATGCATTCTTGTTATTGTTGCAATCATTATTCTGATG---TTCGTTAGATCTTCGAGT 416
consensus_8012#1      CGATGCATTCTTGTTATTGTTGCAATCATTATTTTGATGGGCCGCATTGGGT-------- 273
                      ********************************* *****     * ** * *        

consensus_8012#0      AGTAGAAGTAGCACCAATCCATGATGAATTACTATCGACTGATCCATACATTGGTTGATT 476
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      AACTTTACTAGAAGAAATTGAACTGTTTACTAAATCCGGTTCAGACGACGAACAACGTTC 536
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      AATGCTTTCAGGACAATGTAATCGACTCTGGGTTGTCGTCTGTATTTCTGTACGAGTATT 596
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      GACATCATTTGAGTTTGGTCTACTGATGGTGGATATGATATCTGGAGTGTTTCTTTGTTC 656
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      ATTATCTTTAAAGTTACGACAGAGGGTTTTATTTTGGTCACATTGTATTTCACATGTTTG 716
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      CATCTTGGATGATTTATCTGAACATGTACCTTTAGAGGAAACGCGACCAGCAGATGTAAA 776
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      TCGACATCCACACTTGGTACAAGTGCATTTTTTCTTTGACTATGTAGTTGACAAGCAAGA 836
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      AGCTCGACGTTTGGTCATAGTTGGTGTACCTTTACGATCTTCTTCAGCGCCAGCTTGACT 896
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      TAAGAATGATAAATCAGGTAACGTATGGGAAAGGAAAGCAGATCCAGCCAACCTCGAGGG 956
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      CCGAGGGACTGACAAAAGACCTAACCCAGGATAAGCTATTGAAGCTCGCGGATTACCGAT 1016
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      CCAACCAACTGCATACCCCCTAGCAGCACAACCAGCGCGTAAAGCGGCCATATATGGTGA 1076
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      GTCTGGTCCTGCAGATGCTGTAAGACAGGCAGCAATAGTAGGAGGCTCGATGGGGGACGG 1136
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      TGACTGTTGAATATTATTTCTTTCGTTCCTCTTAGGATTGATATGACAATGAAGTGCAGA 1196
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      CATCGGCCTACTTAAATAAAGCGGCTGAGGATGGCTATGACGTACGGTACAATTATTGGC 1256
consensus_8012#1      ------------------------------------------------------------
                                                                                  

consensus_8012#0      GTACGCAGCAGAACTCCC 1274
consensus_8012#1      ------------------
                                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)