These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8013#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 617 fasta sequence [CAACTCCACATATCAACGATTCATTTACATCGATTTTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGTTCACTCATTCTTCATTTACATCTCTCGACATCACAAGTACGCCTTGCTGACGACGACTGACGAATAGCACAAAATATAGGTTCACTATCTCCTGTCCACCATACCCATCAATACACACATACAATATACTGCAACTCCACATATCAACGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGTTCA-CTCATTCTTCATTTACATCCTTAACTATAGCGCACAACACCACTTCGCCAAATACACCAACAACAAGTCAATACATCTCATCAACATGAACGTTCATTAAAGTGTCTCCAAGAAAATGGACAATTGCTATCAATCGAAATCCAAAATATTACAACTACATGTGGAATCGCTACTATGATTCACACGTGCTGGTTGATGCCGCGGTAGCAAACAATGCATTGATCAGTGGACTGTGTTATACATCCTGCGGTTGGACGCTGATTTTGGATGAGAACGGATACAACGTTTGCTAT] [-] EMBL CD192691 [CAACTCCACATATCAACGATTCATTTACATCGATTTTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGTTCACTCATTCTTCATTTACATCTCTCGACATCACAAGTACGCCTTGCTGACGACGACTGACGAATAGCACAAAATATAGGTTCACTATCTCCTGTCCACCATACCCATCAATACACACATACAATATACTGCAACTCCACATATCAACGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGTTCA CTCATTCTCCATTTACATCCTTAACTATAGCGCACAACACCACTTCGCCAAATACACCAACAACAAGTCAATACATCTCATCAACATGAACGTTCATTAAAGTGTCTCCAAGAAAATGGACAATTGCTATCAATCGAAATCCAAAATATTACAACTACATGTGGAATCGCTACTATGATTCACAC ] [-] EMBL CD120355 [ CGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGG TCACCTCATTCTTCATTTACATCCTTAACTATAGCGCACAACACCACTTCGCCAAATACACCAACAACAAGTCAATACATCTCATCAACATGAACGTTCATTAAAGTGTCTCCAAGAAAATGGACAATTGCTATCAATCGAAATCCAAAATATTACAACTACATGTGGAATCGCTACTATGATTCACACGTGCTGGTTGATGCCGCGGTAGCAAACAATGCATTGATCAGTGGACTGTGTTATACATCCTGCGGTTGGACGCTGATTTTGGATGAGAACGGATACAACGTTTGCTAT] [-] EMBL CD120034 [ CCAAAACCATTCCATCGATTGCAACTCCACATATCGCCGGTTCA CTCATTCTTCATTTACATCCTTAACTATAGCGCGCAACACCACTTCGCCAAATACACCAACAACAAGTCAATACATCTCATCAACATGAACGTTCATTAAAGTGTCTCCAAGAAAATGGACAATTGCTATCAATCGAAATCCAAAATATTACAACTACATGTGGAATCGCTACTATGATTCACACGTGCTGGTTGATGCCGCGGTAGCAAACAATGCATTGATCAGTGGACTGTGTTATACATCCTGCGGTTGGACGCTGATTTTGGATGAGAACGGATACAACGTTTGCTAT] [-] EMBL CD120465 [ CGATTGCAACTCCACATATCGACGGTTCA CTCATTCTTCATTTACATCCTTAACTATAGCGCACAACACCACTTCGCCAAACACACCAACAACAAGTCAATACATCTCATCAACATGAACGTTCATTAAAGTGTCTCCAAGAAAATGGACAATTGCTATCAATCGAAATCCAAAATATTACAACTACATGTGGAATCGCTACTATGATTCACACGTGCTGGTTGATGTCGCGGTAGCAAACAATGCATTGATCAGTGGACTGTGTTATACATCCTGCGGTTGGACGCTGATTTTGGATGAGAACGGATACAACGTTTGCTAT] consensusID : consensus_8013#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 527 fasta sequence [CACACATACCATATACTGCAACTCCACATACCAACGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACAGTTCACTCATTCTTCATTTACATCGATTCTAACTCGACAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGGTCACTCATTCTTCATTTACATCAATTCCCTCGCGACAAACAAACGACCTCCATACTATTGACCCACCACTCACTCACGAATAGTCACCAATCTCATGTTTGTCTAGTCCTTTTACTGCTTATCCAGTTATATCGAGTCCACCAACAAGCTCCACTTCTCTCGACATCACAAGTACGCCTTGCTGACGACGACTGACGAATAGCACAAAATATAGGTTCACTATCTCCTGTCCACCATACCCATCAATACACACATACAATATACTGCAACTCCACATATCAACGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAAAC] [+] EMBL CD166025 [CACACATACCATATACTGCAACTCCACATACCAACGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACAGTTCACTCATTCTTCATTTACATCGATTCTAACTCGACAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGGTCACTCATTCTTCATTTACATCAATTCCCTCGCGACAAACAAACGACCTCCATACTATTGACCCACCACTCAC ] [+] EMBL CD126610 [ tggagTGC ACTCCACATATCAACGA TC TTTACATCGATTCTAACTCGTC ACAAATCACCAAAACCATTCCATCGA TGCAACTCCACATATCGACGGTTTACTCATTCTTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGTTCACTCATTCTTCATTTACATCAATTCCCTCACGACAAACAAACGATCTCCATACTATTGACCCACCACTCACTCACGAATAGTCACCAATCTCATGTTTGTCTAGTCCTTTTACTGCTTATCCAGTTATATCGAGTCCACCAACAAGCTCCACTTCTCTCGACATCACAAGTACGCCTTGCTGACGACGACTGACGAATAGCACAAAATATAGGTTCACTATCTCCTGTCCACCATACCCATCAATACACACATACAATATACTGCAACTCCACATATCAACGATTCATTTACATCGATTCTAACTCGTCAACAAATCACCAAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8013#0 ------------------CAACTCCACATATCAACGATTCATTTACATCGATTTTAACTC 42 consensus_8013#1 CACACATACCATATACTGCAACTCCACATACCAACGATTCATTTACATCGATTCTAACTC 60 ************ ********************** ****** consensus_8013#0 GTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACGGTTCACTCA 102 consensus_8013#1 GTCAACAAATCACCAAAACCATTCCATCGATTGCAACTCCACATATCGACAGTTCACTCA 120 ************************************************** ********* consensus_8013#0 TTCTTCATTTACATCTCTCGACATCACAAGTACGCCTTGCTGACGACGACTGACGAATAG 162 consensus_8013#1 TTCTTCATTTACATCGATTC-TAACTCGACAACAAATCACCAAAACCATTCCATCGATTG 179 *************** * * * * * ** * * * * * ** * consensus_8013#0 CACAAAATATAGGTTCACTA-TCTCCTGTCCACCATACCCATCAATACACACATACAATA 221 consensus_8013#1 CA-ACTCCACATATCGACGGGTCACTCATTCTTCATTTACATCAATTCCCTCG--CGACA 236 ** * * * * ** ** * * * *** ******* * * * * * * consensus_8013#0 TACTGCAACTCCACATATCAACGATTCATTTACATCGATTCTAACTCGTCAACAAATCAC 281 consensus_8013#1 AACAAACGACCTCCATACTATTGACCCAC---------CACTCACTCACGAATAG-TCAC 286 ** * **** * ** ** ** **** ** * **** consensus_8013#0 CAAAACCAT-TCCATCGATTGCAACT-CCACATATCGACGGTTCACTCATTCTTCATTTA 339 consensus_8013#1 CAATCTCATGTTTGTCTAGTCCTTTTACTGCTTATC--CAGTTATATCGAG-TCCACCAA 343 *** *** * ** * * * * * * **** * *** ** * ** * consensus_8013#0 CATCCTTAACTATAGCGCACAACACCACTTCGCCAAATACACCAACAACAAGTCAATACA 399 consensus_8013#1 CAAGCTCCACTTCTCTCGACATCACAAGTACGCCT----TGCTGACGACGA-CTGACGAA 398 ** ** *** *** *** * * **** * ** ** * * * consensus_8013#0 TCTCATCAACATGAACGTTCATTAAAGTGTCTCCAAGAAAATGGACAATTGCTATCAATC 459 consensus_8013#1 TAGCA-CAAAATATAGGTTCACTATCTCCTGTCCACCATACCCATCAAT--------ACA 449 * ** *** ** * ***** ** * **** * * **** * consensus_8013#0 GAAATCCAAAATATTACAACTACATGTGGAATCGCTACTATGATTCACACGTGCTGGTTG 519 consensus_8013#1 CACATACAATATACTGCAACTCCACAT---ATCA-----ACGATTCATTTACATCGATTC 501 * ** *** *** * ***** ** * *** * ****** * ** consensus_8013#0 ATGCCGCGGTAGCAAACAATGCATTGATCAGTGGACTGTGTTATACATCCTGCGGTTGGA 579 consensus_8013#1 -TAACTCGTCAACAAATCAC-CAAAAAC-------------------------------- 527 * * ** * **** * ** * consensus_8013#0 CGCTGATTTTGGATGAGAACGGATACAACGTTTGCTAT 617 consensus_8013#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||