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Schistosoma mansoni
cluster # 8025 cluster # 8025       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8025#0 length = 625 sequences # 4  
consensus_8025#1 length = 426 sequences # 2  

consensusID : consensus_8025#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 625
fasta sequence
                              [ATATATTAAAAAGCTACATGTGAACAATAATAATAATAATATATTTCCGCAATAGCAGGTACACGCCATTTTTACAGGCATGGTCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGGATTAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACTATAAATAACCGTTAAGCTATAGCAAATAATATAGCCGAACAGGAAATCCTCACCGCTGAAATTATCTTGAACTGTTTCTCAATGAGTTAGTAGATGATACCCAGTTCTATCTATTGCACTCTTATTAATTATTCTTTTGGGAAATATCATAACTTATTCGCGACTAAACCCACTAAGGTTATTTAGACATTTTCTTGGCGTTGATGCTTCGGTTTTGTTGGTTATGAGGCTTTTGTACTAAGGATAACATTTTCGGTTTACGTTTTTTCTACTTCTCAAATCATAAATGTACGTATATTTTCTATGCTGAATATCCTTTCCGGTAATTTTCAGAGTTTGGTAACATCTAAATGTAACAATTAGTGAACTCAAGAGCCAGTAGAACC]

[+] EMBL CD120005             [ATATATTAAAAAGCTACATGTGAACAATAATAATAATAATATATTTCCGCAATAGCAGGTACACGCCATTTTTACAGGCATGGTCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD074186             [                               AATAATAATTTATTTCCGCAATAGCAGGTACACGCCATTTTTACAGGCATGGTCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGGATTAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACTATAAATAACCGTTAAGCTATAGCAAATAATATAGCCGAACAGGAAATCCTCACCGCTGAAATTATCTTGAACTGTTTCTCAATGAGTTAGTAGATGATACCCAGTTCTATCTATTGCACTCTTATTAATTATTCTTTTGGGAAATATCATAACTTATTCGCGACTAAACCCACTAAGGTTATTTAGACATTTTCTTGGCGTTGATGCTTCGGTTTTGTTGGTTATGAGGCTTTTGTACTAAGGATAACATTTTCGGTTTACGTTTTTTCTACTTCTCAAATCATAAATGTACGTATATTTTCTATGCTGAATATCCTTTCCGGTAATTTTCAGAGTTTGGTAACATCTAAATGTAACAATTAGTGAACTCAAGAGCCAGTAGAACC]
[-] EMBL CD120111             [                                                                                  GTCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGGATTAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACTATAAATAACCGTTAAGCTATAGCAAATAATATAGCCGAACAGGAAATCCTCACCGCTGAAATTATCTTGAACTGTTTCTCAATGAGTTAGTAGATGATACCCAGTTCTATCAAATGCACTCTTATTAATTATTCTTTTGGGAAATATCATAACTTATTCGCGACTAAACCCACCAAGGTTATTTAGACATTTTCTTGGCGTGGGTGCTTCGGTT                                                                                                                                                                            ]
[-] EMBL CD120498             [                                                                                                                                        TTAGACTCTACAATCAAAATGAGTGATTNAACGAATATAAGGATTAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACTATAAATAACCGTTAAGCTATAGCAAATAATATAGCCGAACAGGAAATCCTCACCGCTGAAATTATCTTGAACTGTTTCTCAATGAGTTAGTAGATGATACCCAGTTCTATCTATTGCACTCTTATTAATTATCCTTTTGGGAAATATCATAAC TATTCGCGACTAAACCCACTAAGG TATTTAGACATTTc                                                                                                                                                                                                 ]


>consensus_8025#0 ATATATTAAAAAGCTACATGTGAACAATAATAATAATAATATATTTCCGCAATAGCAGGT ACACGCCATTTTTACAGGCATGGTCTACAATTTACAACATATACTGGTTCACAGTATGCA TCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGGAT TAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACTA TAAATAACCGTTAAGCTATAGCAAATAATATAGCCGAACAGGAAATCCTCACCGCTGAAA TTATCTTGAACTGTTTCTCAATGAGTTAGTAGATGATACCCAGTTCTATCTATTGCACTC TTATTAATTATTCTTTTGGGAAATATCATAACTTATTCGCGACTAAACCCACTAAGGTTA TTTAGACATTTTCTTGGCGTTGATGCTTCGGTTTTGTTGGTTATGAGGCTTTTGTACTAA GGATAACATTTTCGGTTTACGTTTTTTCTACTTCTCAAATCATAAATGTACGTATATTTT CTATGCTGAATATCCTTTCCGGTAATTTTCAGAGTTTGGTAACATCTAAATGTAACAATT AGTGAACTCAAGAGCCAGTAGAACC



consensusID : consensus_8025#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 426
fasta sequence
                              [GTTCTATTAGTAGAAGAAACCGGATTAGTAGCCAATTAATCGTTATTTATTTCGTGAGAGTGCACAAAGTCAAGCGCGAGACTATCTTTATCAAACACACTAAGTTTTTCAACGTTCAATAATAGTCAAATATAATCTCGAATGGCAACATGAATAACTGTTATGTCCATCTGACATCCTTCATAACATCTAGAGAATTTTTGGTGTTATTCGTCAATTCAGCTATTAATAATAATATATTTCTGCGACAGCAGGTACACACCATTTTTACAGGCATGATCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGTAATTATAATCTATAAAAGTTGATAGCAGTTCATTCGTTCAGATATAATGTGTTTTCATAAGAATAGTTTCCAAAGGGGCATGGCGTCCA]

[-] EMBL CD088772             [GTTCTATTAGTAGAAGAAACCGGATTAGTAGCCAATTAATCGTTATTTATTTCGTGAGAGTGCACAAAGTCAAGCGCGAGACTATCTTTATCAAACACACTAAGTTTTTCAACGTTCAATAATAGTCAAATATAATCTCGAATGGCAACATGAATAACTGTTATGTCCATCTGACATCCTTCATAACATCTAGAGAATTTTTGGTGTTATTCGTCAATTCAGCTATTAATAATAATATATTTCTGCGACAGCAGGTACACACCATTTTTACAGGCATGATCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGTAATTATAATCTATAAAAGTTGATAGCAGTTCATTCGTTCAGATATAATGTGTTTTCATAAGAATAGTTTCCAAAGGGGCATGGCGTCCA]
[+] EMBL CD089234             [                                                                                                                                                                                                                                                                           TTACAGGCATGATCTACAATTTACAACATATACTGGTTCACAGTATGCATCCTGAGCAGGGTTGTTTAGTAATTATAATCTATAAAAGTTGATAGCAGTTCATTCGTTCAGATATAATGTGTTTTCATAAGAATAGTTTCCAA                ]


>consensus_8025#1 GTTCTATTAGTAGAAGAAACCGGATTAGTAGCCAATTAATCGTTATTTATTTCGTGAGAG TGCACAAAGTCAAGCGCGAGACTATCTTTATCAAACACACTAAGTTTTTCAACGTTCAAT AATAGTCAAATATAATCTCGAATGGCAACATGAATAACTGTTATGTCCATCTGACATCCT TCATAACATCTAGAGAATTTTTGGTGTTATTCGTCAATTCAGCTATTAATAATAATATAT TTCTGCGACAGCAGGTACACACCATTTTTACAGGCATGATCTACAATTTACAACATATAC TGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGTAATTATAATCTATAAAAGTTGAT AGCAGTTCATTCGTTCAGATATAATGTGTTTTCATAAGAATAGTTTCCAAAGGGGCATGG CGTCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8025#0      ATATATTAAAAAGCTACATGTGAACAATAATAATAATAATATATTTCCGCAATAGC-AGG 59
consensus_8025#1      -----------------------GTTCTATTAGTAG-AAGAAACCGGATTAGTAGCCAAT 36
                                                 ** ** **  ** * *       * **** *  

consensus_8025#0      TACACGCCATTTTTACAGGCATGGTCTACAATTTACAACATATACTGGTTCACAGTATGC 119
consensus_8025#1      TAATCGTTATTTATTTCGTGAGAGTGCACAAAGTCAAGCGCGAGACTATCTTTATCAAAC 96
                      **  **  **** *   *  *  **  ****  *  * *         *    *  *  *

consensus_8025#0      ATCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGGA 179
consensus_8025#1      ACACTAAGT----TTTTCAACGTTCAATAATAGTCAAATATAATCT--CGAATGGCAACA 150
                      *  * ***     ** *  *   ** * ***    *    * ** *  *****   *  *

consensus_8025#0      TTAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACT 239
consensus_8025#1      TGAATAACTGTTATGTCCATCTGACATCCTTCATAACATCTAGAGAATTTTTG--GTGTT 208
                      * **  *          **  * * *   **     **         ** *    *   *

consensus_8025#0      ATAAATAACCGTTAAGCTATAGCAAATAATATAGCCG---AACAGGAAATCCTCACCGCT 296
consensus_8025#1      ATTCGT--CAATTCAGCTATTAATAATAATATATTTCTGCGACAGCAGGTACACACCATT 266
                      **   *  *  ** ******    *********        **** *  * * ****  *

consensus_8025#0      GAAATTATCTTGAACTGTTTCTCA----ATGAGTTAGTAGATGATACCCAGTTCTATCTA 352
consensus_8025#1      TTTACAGGCATGATCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAA 326
                         *    * *** **     * *    **    * **  *   **  **   * * * *

consensus_8025#0      TTGCACTCTTATTAATTATTCTTTTGGGAAAT--ATCATAACTTATTCGCGACTAAACCC 410
consensus_8025#1      --GGTTGTTTAGTAATTATAATCTATAAAAGTTGATAGCAGTTCATTCGT--TCAGATAT 382
                        *     *** *******  * *    ** *  **   *  * *****     * *   

consensus_8025#0      ACTAAGGTTATTTAGACATTTTCTTGGCGTTGATGCTTCGGTTTTGTTGGTTATGAGGCT 470
consensus_8025#1      AATGTGTTTTCATAAGAATAGTTTC--CAAAGGGGCATGGCGTCCA-------------- 426
                      * *  * **   **   **  * *   *   *  ** * *  *                 

consensus_8025#0      TTTGTACTAAGGATAACATTTTCGGTTTACGTTTTTTCTACTTCTCAAATCATAAATGTA 530
consensus_8025#1      ------------------------------------------------------------
                                                                                  

consensus_8025#0      CGTATATTTTCTATGCTGAATATCCTTTCCGGTAATTTTCAGAGTTTGGTAACATCTAAA 590
consensus_8025#1      ------------------------------------------------------------
                                                                                  

consensus_8025#0      TGTAACAATTAGTGAACTCAAGAGCCAGTAGAACC 625
consensus_8025#1      -----------------------------------
                                                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)