These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8025#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 625 fasta sequence [ATATATTAAAAAGCTACATGTGAACAATAATAATAATAATATATTTCCGCAATAGCAGGTACACGCCATTTTTACAGGCATGGTCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGGATTAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACTATAAATAACCGTTAAGCTATAGCAAATAATATAGCCGAACAGGAAATCCTCACCGCTGAAATTATCTTGAACTGTTTCTCAATGAGTTAGTAGATGATACCCAGTTCTATCTATTGCACTCTTATTAATTATTCTTTTGGGAAATATCATAACTTATTCGCGACTAAACCCACTAAGGTTATTTAGACATTTTCTTGGCGTTGATGCTTCGGTTTTGTTGGTTATGAGGCTTTTGTACTAAGGATAACATTTTCGGTTTACGTTTTTTCTACTTCTCAAATCATAAATGTACGTATATTTTCTATGCTGAATATCCTTTCCGGTAATTTTCAGAGTTTGGTAACATCTAAATGTAACAATTAGTGAACTCAAGAGCCAGTAGAACC] [+] EMBL CD120005 [ATATATTAAAAAGCTACATGTGAACAATAATAATAATAATATATTTCCGCAATAGCAGGTACACGCCATTTTTACAGGCATGGTCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGG ] [+] EMBL CD074186 [ AATAATAATTTATTTCCGCAATAGCAGGTACACGCCATTTTTACAGGCATGGTCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGGATTAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACTATAAATAACCGTTAAGCTATAGCAAATAATATAGCCGAACAGGAAATCCTCACCGCTGAAATTATCTTGAACTGTTTCTCAATGAGTTAGTAGATGATACCCAGTTCTATCTATTGCACTCTTATTAATTATTCTTTTGGGAAATATCATAACTTATTCGCGACTAAACCCACTAAGGTTATTTAGACATTTTCTTGGCGTTGATGCTTCGGTTTTGTTGGTTATGAGGCTTTTGTACTAAGGATAACATTTTCGGTTTACGTTTTTTCTACTTCTCAAATCATAAATGTACGTATATTTTCTATGCTGAATATCCTTTCCGGTAATTTTCAGAGTTTGGTAACATCTAAATGTAACAATTAGTGAACTCAAGAGCCAGTAGAACC] [-] EMBL CD120111 [ GTCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGGATTAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACTATAAATAACCGTTAAGCTATAGCAAATAATATAGCCGAACAGGAAATCCTCACCGCTGAAATTATCTTGAACTGTTTCTCAATGAGTTAGTAGATGATACCCAGTTCTATCAAATGCACTCTTATTAATTATTCTTTTGGGAAATATCATAACTTATTCGCGACTAAACCCACCAAGGTTATTTAGACATTTTCTTGGCGTGGGTGCTTCGGTT ] [-] EMBL CD120498 [ TTAGACTCTACAATCAAAATGAGTGATTNAACGAATATAAGGATTAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACTATAAATAACCGTTAAGCTATAGCAAATAATATAGCCGAACAGGAAATCCTCACCGCTGAAATTATCTTGAACTGTTTCTCAATGAGTTAGTAGATGATACCCAGTTCTATCTATTGCACTCTTATTAATTATCCTTTTGGGAAATATCATAAC TATTCGCGACTAAACCCACTAAGG TATTTAGACATTTc ] consensusID : consensus_8025#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 426 fasta sequence [GTTCTATTAGTAGAAGAAACCGGATTAGTAGCCAATTAATCGTTATTTATTTCGTGAGAGTGCACAAAGTCAAGCGCGAGACTATCTTTATCAAACACACTAAGTTTTTCAACGTTCAATAATAGTCAAATATAATCTCGAATGGCAACATGAATAACTGTTATGTCCATCTGACATCCTTCATAACATCTAGAGAATTTTTGGTGTTATTCGTCAATTCAGCTATTAATAATAATATATTTCTGCGACAGCAGGTACACACCATTTTTACAGGCATGATCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGTAATTATAATCTATAAAAGTTGATAGCAGTTCATTCGTTCAGATATAATGTGTTTTCATAAGAATAGTTTCCAAAGGGGCATGGCGTCCA] [-] EMBL CD088772 [GTTCTATTAGTAGAAGAAACCGGATTAGTAGCCAATTAATCGTTATTTATTTCGTGAGAGTGCACAAAGTCAAGCGCGAGACTATCTTTATCAAACACACTAAGTTTTTCAACGTTCAATAATAGTCAAATATAATCTCGAATGGCAACATGAATAACTGTTATGTCCATCTGACATCCTTCATAACATCTAGAGAATTTTTGGTGTTATTCGTCAATTCAGCTATTAATAATAATATATTTCTGCGACAGCAGGTACACACCATTTTTACAGGCATGATCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGTAATTATAATCTATAAAAGTTGATAGCAGTTCATTCGTTCAGATATAATGTGTTTTCATAAGAATAGTTTCCAAAGGGGCATGGCGTCCA] [+] EMBL CD089234 [ TTACAGGCATGATCTACAATTTACAACATATACTGGTTCACAGTATGCATCCTGAGCAGGGTTGTTTAGTAATTATAATCTATAAAAGTTGATAGCAGTTCATTCGTTCAGATATAATGTGTTTTCATAAGAATAGTTTCCAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8025#0 ATATATTAAAAAGCTACATGTGAACAATAATAATAATAATATATTTCCGCAATAGC-AGG 59 consensus_8025#1 -----------------------GTTCTATTAGTAG-AAGAAACCGGATTAGTAGCCAAT 36 ** ** ** ** * * * **** * consensus_8025#0 TACACGCCATTTTTACAGGCATGGTCTACAATTTACAACATATACTGGTTCACAGTATGC 119 consensus_8025#1 TAATCGTTATTTATTTCGTGAGAGTGCACAAAGTCAAGCGCGAGACTATCTTTATCAAAC 96 ** ** **** * * * ** **** * * * * * * * consensus_8025#0 ATCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGGA 179 consensus_8025#1 ACACTAAGT----TTTTCAACGTTCAATAATAGTCAAATATAATCT--CGAATGGCAACA 150 * * *** ** * * ** * *** * * ** * ***** * * consensus_8025#0 TTAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACT 239 consensus_8025#1 TGAATAACTGTTATGTCCATCTGACATCCTTCATAACATCTAGAGAATTTTTG--GTGTT 208 * ** * ** * * * ** ** ** * * * consensus_8025#0 ATAAATAACCGTTAAGCTATAGCAAATAATATAGCCG---AACAGGAAATCCTCACCGCT 296 consensus_8025#1 ATTCGT--CAATTCAGCTATTAATAATAATATATTTCTGCGACAGCAGGTACACACCATT 266 ** * * ** ****** ********* **** * * * **** * consensus_8025#0 GAAATTATCTTGAACTGTTTCTCA----ATGAGTTAGTAGATGATACCCAGTTCTATCTA 352 consensus_8025#1 TTTACAGGCATGATCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAA 326 * * *** ** * * ** * ** * ** ** * * * * consensus_8025#0 TTGCACTCTTATTAATTATTCTTTTGGGAAAT--ATCATAACTTATTCGCGACTAAACCC 410 consensus_8025#1 --GGTTGTTTAGTAATTATAATCTATAAAAGTTGATAGCAGTTCATTCGT--TCAGATAT 382 * *** ******* * * ** * ** * * ***** * * consensus_8025#0 ACTAAGGTTATTTAGACATTTTCTTGGCGTTGATGCTTCGGTTTTGTTGGTTATGAGGCT 470 consensus_8025#1 AATGTGTTTTCATAAGAATAGTTTC--CAAAGGGGCATGGCGTCCA-------------- 426 * * * ** ** ** * * * * ** * * * consensus_8025#0 TTTGTACTAAGGATAACATTTTCGGTTTACGTTTTTTCTACTTCTCAAATCATAAATGTA 530 consensus_8025#1 ------------------------------------------------------------ consensus_8025#0 CGTATATTTTCTATGCTGAATATCCTTTCCGGTAATTTTCAGAGTTTGGTAACATCTAAA 590 consensus_8025#1 ------------------------------------------------------------ consensus_8025#0 TGTAACAATTAGTGAACTCAAGAGCCAGTAGAACC 625 consensus_8025#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||