These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1162 fasta sequence [CGTCACGAGGCCCGATCAATAATCTTCAGGATGAGTTATCTCATTTGTCCAACTCTATGTGCATTTATCAATTACCTGCTGATATTGAGTTAGGTATGTAGGTTGTTAAATGCTTACTTTATTTAAAGGTATTCAATAACATCACCCGGCTTGGCTAAAAAGAGGCGAAAATAGCTCACTAATTGAACACCTTGTGAACACAGTTCAATCAATCAAGACAGAATCTGAATTCATGGTCATCTACAAGATAATTATGAGTCTGCCAAATGTATTTATATTGCATCTTCTTAGCATTGCCGAAGCAATAGCCATACATCAGGGAAAACTAGGATTGTGTGTCCAAAACCTCTTCTTCTACTATAGTCTAAATATCTCACTATTTTTTTCTTCATACTCTTCTTCCTTTGCAGCTGTCTGCTTTCCTTCTATCTTCCTTTATAGAACTTTTGCCTCCAAATGGTTTTTTCTTCTATTTCTATGATCCTCTTGATTATAGTTCATCTCAATTTCAACTTTTTATTTTGCCATTGTGAGTCTTCCTTTCCCAATTATAATTTCCCTATCTTTCTTCATGATGTATATTCAATCCCTCAATGGTAAAACTATTATTAGTTTCCCTGATAAAAATAACGTTGTAATACCTTTGTTTATTCTACCTCACTGTTACCATGTTCAACAGAATCCCTATTATTCACCGAAAAGAGAACTCTTCATCGCAATGGGTATATTCCGTTTATCTATCGTTTCATCAATAAACTTGTAGTGGAAACTCATAGAGATTAAGAAATCGCATGAATAAAACAACAACGAGAAAAACAATGACTTGATATATTTCATTTAACATTAGTACTGTAGTGAATGGGAACGTAAATGGAAACAATTGAATGTATTTGGATACAAAATTACGGAACCTGTAAGGACGGCTCGCCGTTAAACTCTAGGAAGCCTCAAGAAGCCTAGAAAGAGCCACAGACATTCCATTCAATCACTGCTAGGAGAATATTCTAGAATGTCGATGTATAGCTTCCCCATTGGATGAATAAGAAGGACTCCCTATGTGCCTAATGGTTGTCTGAAATGATGATTTACTCTCAGTCAAAAAACTATAAATACATGAGATTTCTGTACTATACTTTGACACCGTTTTGGGGAATAAAAGTTC] [+] EMBL CD082235 [CGTCACGAGGCCCGATCAATAATCTTCAGGATGAGTTATCTCATTTGTCCAACTCTATGTGCATTTATCAATTACCTGCTGATATTGAGTTAGGTATGTAGGTTGTTAAATGCTTACTTTATTTAAAGGTATTCAATAACATCACCCGGCTTGGCTAAAAAGAGGCGAAAATAGCTCACTAATTGAACACCTTGTGAACACAGTTCAATCAATCAAGACAGAATCTGAATTCATGGTCATCTACAAGATAATTATGAGTCTGCCAAATGTATTTATATTGCATCTTCTTAGCATTGCCGAAGCAATAGCCATACATCAGGGAAAACTAGGATTGTGTGTCCAAAACCTCTTCTTCTACTATAGTCTAAATATCTCACTATTTTTTTCTTCATACTCTTCTTCCTTTGCAGCTGTCTGCTTTCCTTCTATCTTCCTTTATAGAACTTTTGCCTCCAAATGGTTTTTTCTTCTATTTCTATGATCCTCTTGATTATAGTTCATCTCAATTTCAACTTTTTATTTTGCCATTGTGAGTCTTCCTTTCCCAATTATAATTTCCCTATCTTTCTTCATGATGTATATTCAATCCCTCAATGGTAAAACTATTATTAGTTTCCCTGATAAAAATAACGTTGTAATACCTTTGTTTATTCTACCTCACTGTTACCATGTTCAACAGAATCCCTATTATTC ] [-] EMBL CD075844 [ TCAATGGTAAAACTATANTTAGTTTCCCTGATAAAAATAACGTTGTAATACCTTTGTTTATTCTACCTCACTGTTACCATGTTCAACAGAATCCCTATTATTCACCGAAAAGAGAACTCTTCATCGCAATGGGTATATTCCGTTTATCTATCGTTTCATCAATAAACTTGTAGTGGAAACTCATAGAGATTAAGAAATCGCATGAATAAAACAACAACGAGAAAAACAATGACTTGATATATTTCATTTAACATTAGTACTGTAGTGAATGGGAACGTAAATGGAAACAATTGAATGTATTTGGATACAAAATTACGGAACCTGTAAGGACGGCTCGCCGTTAAACTCTAGGAAGCCTCAAGAAGCCTAGAAAGAGCCACAGACATTCCATTCAATCACTGCTAGGAGAATATTCTAGAATGTCGATGTATAGCTTCCCCATTGGATGAATAAGAAGGACTCCCTATGTGCCTAATGGTTGTCTGAAATGATGATTTACTCTCAGTCAAAAAACTATAAATACATGAGATTTCTGTACTATACTTTGACACCGTTTTGGGGAATAAAAGTTC] consensusID : consensus_8030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [GTGGGTGCATAACATTCATTGTAATTCCCTCCTTCTTCGCTTTGAAAAATCCTTTGGCGATCGTGGATCCATGAGATTTAAATCCTAGTGCATACCGTGCTTTTTGGACAAAAAAGAAGAGGAACTCCTGGTGGGACAAATATTTCCTTCTGAGCGACCAAAGTCCAGCANCTTCTCTCCACCAAAAGGGGGGGGGNCCAGCTCGGGACCCATGAGCTTCACTGATTCCGAGAACCGTCAAGTTGTATCTCCTCATTTCCGTAGCTGTTTGATTGGTCCTTCCGGTCCCCCATATTGTGCGGACGTTCCATGTACCTATAAAAATTGTTGCTCTGGTTGTTAGAAGGGGCATCGGCTTCGTGACTTTCGTAGAATCTCGGCTTTCATCATGAAGAGTCATAATTCTT] [+] EMBL CD179447 [GTGGGTGCATAACATTCATTGTAATTCCCTCCTTCTTCGCTTTGAAAAATCCTTTGGCGATCGTGGATCCATGAGATTTAAATCCTAGTGCATACCGTGCTTTTTGGACAAAAAAGAAGAGGAACTCCTGGTGGGACAAATATTTCCTTCTGAGCGACCAAAGTCCAGCANCTTCTCTCCACCAAAAGGGGGGGGGNCCAGCTCGGGACCCATGAGCTTCACTGATTCCGAGAACCGTCAAGTTGTATCTCCTCATTTCCGTAGCTGTTTGATTGGTCCTTCCGGTCCCCCATATTGTGCGGACGTTCCATGTACCTATAAAAATTGTTGCTCTGGTTGTTAGAAGGGGCATCGGCTTCGTGACTTTCGTAGAATCTCGGCTTTCATCATGAAGAGTCATAATTCTT] consensusID : consensus_8030#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [CTCAGAGTGTTAATTTTCTGGTTAATTGCAATTTAGAATTGTGATATTACCACCAAATATGTTTTTCTGTTTTATACTATTCTAGAAAAATCCTGATTCACATTATCTACAAATGACTCCATTGCAAGCAGATATTTTAGTATCGAATAAAGTGAATTATACAGGAGAGGGACTATGAATTTATCAAATCATCAAATATGATTATATGATGAATCAAAGAATTTTTCAACTATATAGAAGCAAATGAATTTACAATTGTTCTATTTCACCTCTCAGGAAAATTCTGCAGTCCATATTGAACTATCGA] [+] EMBL BG931735 [CTCAGAGTGTTAATTTTCTGGTTAATTGCAATTTAGAATTGTGATATTACCACCAAATATGTTTTTCTGTTTTATACTATTCTAGAAAAATCCTGATTCACATTATCTACAAATGACTCCATTGCAAGCAGATATTTTAGTATCGAATAAAGTGAATTATACAGGAGAGGGACTATGAATTTATCAAATCATCAAATATGATTATATGATGAATCAAAGAATTTTTCAACTATATAGAAGCAAATGAATTTACAATTGTTCTATTTCACCTCTCAGGAAAATTCTGCAGTCCATATTGAACTATCGA] consensusID : consensus_8030#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [GCGGGATCGTGAATGCGCACTGCTAAGGAGTCCCATAATAGGGCGAAACAGCCGTCCAGTGCTTCCAGGTTTCCCATGGTAGTCTAGCTTCAATTGATTCATGATTTCAACTATGAAAATACTAAATTCTCCGCAAAACCCCCTTTGATCTACTATGAATTAGCTTGTTCGGTTAACTAACATTTTGATAAGGTTCCTCGGAGAGACTATAATTTATGGACGAGTCAATCAGAGGCGTCGAAGGGATTTCAAGGTCACAGCGCCAATTTCACTACCTGATGCTCATGTACAATCGGTCCACAGAG] [+] EMBL CD090477 [GCGGGATCGTGAATGCGCACTGCTAAGGAGTCCCATAATAGGGCGAAACAGCCGTCCAGTGCTTCCAGGTTTCCCATGGTAGTCTAGCTTCAATTGATTCATGATTTCAACTATGAAAATACTAAATTCTCCGCAAAACCCCCTTTGATCTACTATGAATTAGCTTGTTCGGTTAACTAACATTTTGATAAGGTTCCTCGGAGAGACTATAATTTATGGACGAGTCAATCAGAGGCGTCGAAGGGATTTCAAGGTCACAGCGCCAATTTCACTACCTGATGCTCATGTACAATCGGTCCACAGAG] consensusID : consensus_8030#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 179 fasta sequence [GGGATCCAAAGGACGTGTTAGTGCTACGAGAATATCACGTAAAGTATCAAGTCCAACAGTTTTTGAGCAAAACTGTTCAAGTCGTTTATCTCTATCTTCACTGACTTAACAGGTTATATTACAGAGGGTCAAATTTATGTTGATCGTCAATTACATAACAGGCAGATCTATCCTCCAAT] [+] EMBL CD062430 [GGGATCCAAAGGACGTGTTAGTGCTACGAGAATATCACGTAAAGTATCAAGTCCAACAGTTTTTGAGCAAAACTGTTCAAGTCGTTTATCTCTATCTTCACTGACTTAACAGGTTATATTACAGAGGGTCAAATTTATGTTGATCGTCAATTACATAACAGGCAGATCTATCCTCCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8030#2 ------------------------------------------------------------ consensus_8030#3 ------------------------------------------------------------ consensus_8030#4 ------------------------------------------------------------ consensus_8030#0 CGTCACGAGGCCCGATCAATAATCTTCAGGATGAGTTATCTCATTTGTCCAACTCTATGT 60 consensus_8030#1 ------------------------------------------------------------ consensus_8030#2 ------------------------------------------------------------ consensus_8030#3 ------------------------------------------------------------ consensus_8030#4 ------------------------------------------------------------ consensus_8030#0 GCATTTATCAATTACCTGCTGATATTGAGTTAGGTATGTAGGTTGTTAAATGCTTACTTT 120 consensus_8030#1 ------------------------------------------------------------ consensus_8030#2 ------------------------------------------------------------ consensus_8030#3 ------------------------------------------------------------ consensus_8030#4 ------------------------------------------------------------ consensus_8030#0 ATTTAAAGGTATTCAATAACATCACCCGGCTTGGCTAAAAAGAGGCGAAAATAGCTCACT 180 consensus_8030#1 ------------------------------------------------------------ consensus_8030#2 ------------------------------------------------------------ consensus_8030#3 ------------------------------------------------------------ consensus_8030#4 ------------------------------------------------------------ consensus_8030#0 AATTGAACACCTTGTGAACACAGTTCAATCAATCAAGACAGAATCTGAATTCATGGTCAT 240 consensus_8030#1 ------------------------------------------------------------ consensus_8030#2 ------------------------------------------------------------ consensus_8030#3 ------------------------------------------------------------ consensus_8030#4 ------------------------------------------------------------ consensus_8030#0 CTACAAGATAATTATGAGTCTGCCAAATGTATTTATATTGCATCTTCTTAGCATTGCCGA 300 consensus_8030#1 ------------------------------------------------------------ consensus_8030#2 ------------------------------------------------------------ consensus_8030#3 ------------------------------------------------------------ consensus_8030#4 ------------------------------------------------------------ consensus_8030#0 AGCAATAGCCATACATCAGGGAAAACTAGGATTGTGTGTCCAAAACCTCTTCTTCTACTA 360 consensus_8030#1 ------------------------------------------------------------ consensus_8030#2 ------------------------------------------------------------ consensus_8030#3 ------------------------------------------------------------ consensus_8030#4 ------------------------------------------------------------ consensus_8030#0 TAGTCTAAATATCTCACTATTTTTTTCTTCATACTCTTCTTCCTTTGCAGCTGTCTGCTT 420 consensus_8030#1 ------------------------------------------------------------ consensus_8030#2 ------------------------------------------------------------ consensus_8030#3 ------------------------------------------------------------ consensus_8030#4 ------------------------------------------------------------ consensus_8030#0 TCCTTCTATCTTCCTTTATAGAACTTTTGCCTCCAAATGGTTTTTTCTTCTATTTCTATG 480 consensus_8030#1 ------------------------------------------------------------ consensus_8030#2 ------------------------------------------------------------ consensus_8030#3 ------------------------------------------------------------ consensus_8030#4 ------------------------------------------------------------ consensus_8030#0 ATCCTCTTGATTATAGTTCATCTCAATTTCAACTTTTTATTTTGCCATTGTGAGTCTTCC 540 consensus_8030#1 ------------------------------------------------------------ consensus_8030#2 ------------------------------------------------------------ consensus_8030#3 ------------------------------------------------------------ consensus_8030#4 ------------------------------------------------------------ consensus_8030#0 TTTCCCAATTATAATTTCCCTATCTTTCTTCATGATGTATATTCAATCCCTCAATGGTAA 600 consensus_8030#1 ------------------------------------------------------------ consensus_8030#2 ------------------------------------------------------------ consensus_8030#3 ------------------------------------------------------------ consensus_8030#4 ------------------------------------------------------------ consensus_8030#0 AACTATTATTAGTTTCCCTGATAAAAATAACGTTGTAATACCTTTGTTTATTCTACCTCA 660 consensus_8030#1 ------------------------------------------------------------ consensus_8030#2 ------------------------------------------------------------ consensus_8030#3 ------------------------------------------------------------ consensus_8030#4 ------------------------------------------------------------ consensus_8030#0 CTGTTACCATGTTCAACAGAATCCCTATTATTCACCGAAAAGAGAACTCTTCATCGCAAT 720 consensus_8030#1 --------------------GTGGGTGCATAACATTCATTGTAATTCCCTCCTTCTTCGC 40 consensus_8030#2 -----------------------------CTCAGAGTGTTAATTTTC-----TGGTTAAT 26 consensus_8030#3 -----------------------------GCGGGATCGTGAATGCGCA---CTGCTAAGG 28 consensus_8030#4 -------------------------GGGATCCAAAGGACGTGTTAGTG---CTACGAGAA 32 consensus_8030#0 GGGTATATTCCGTTTATCTATCGTTTCATCAATAAACTTGTAGTGGAA---ACTCATAGA 777 consensus_8030#1 TTTGAAAAATCCTTTGGCGATCGTGGATCCATGAGATTTAAATCCTAGTGCATACCGTGC 100 consensus_8030#2 TGCAATTTAGAATTGTGATATTACCACCAAATATGTTTTTCTGTTTTAT---ACTATTCT 83 consensus_8030#3 AGTCCCATAATAGGGCGAAACAGCCGTCCAGTGCTTCCAGGTTTCCCAT---GGTAGTCT 85 consensus_8030#4 TATCACGTAAAGTATCAAGTCCAACAGTTTTTGAGCAAAACTGTTCAA-----GTCGTTT 87 consensus_8030#0 GATTAAGAAATCGCATGAATAAAACAAC-AACGAGAAAAACAATGACTT---GATATATT 833 consensus_8030#1 TTTTTGGACAAAAAAGAAGAGGAACTCCTGGTGGGACAAATATTTCCTTCTGAGCGACCA 160 * * * consensus_8030#2 AGAAAAATCCTGATTCACATTATCTAC----AAATGACTCCATTGCAAGC--AGA---TA 134 consensus_8030#3 AGCTTCAAT-TGATTCATGATTTCAACTATGAAAATACTAAATTCTCCGC--AAAACCCC 142 consensus_8030#4 ATCTCTATC----TTCACTGACTTAAC----AGGTTATATTACAGAGGGT--CAAATTTA 137 consensus_8030#0 TCATTTAACATTAGTACTGTAGTGAATG--GGAACGTAAATGGAAACAAT--TGAATGTA 889 consensus_8030#1 AAGTCCAGCANCTTCTCTCCACCAAAAGGGGGGGGGNCCAGCTCGGGACCCATGAGCTTC 220 * * * consensus_8030#2 TTTTAGTATCGAATAAAGTGAATTATACAGGAGAGGGACTATGAATTTATCAAATCATCA 194 consensus_8030#3 CTTTGATCTACTATGAATTAGCTTGTTCGGTTAACTAACATT---TTGATAAGGTTCCTC 199 consensus_8030#4 TGTTGATCGTCAATTACATAACAGGCAGATCTATCCTCCAAT------------------ 179 consensus_8030#0 TTTGGATACAAAATTACGGAACCTGTAAGGACGGCTCGCCGTTAAACTCTAGGAAGCCTC 949 consensus_8030#1 ACTGATTCCGAGAACCGTCAAGTTGTATCTCCTCATTTCCGT-AGCTGTTTGATTGGTCC 279 * * * * * consensus_8030#2 AATATGATTATAT-GATGAATCAAAGAATTTTTCAACTATATAGAA-GCAAATG-----A 247 consensus_8030#3 GGAGAGACTATA---ATTTATGGACGAGTCAATCAGAGGCGTCGAA-GGGATTT-----C 250 consensus_8030#4 ------------------------------------------------------------ consensus_8030#0 AAGAAGCCTAGAAAGAGCCACAGACATTCCATTCAATCACTGCTAG-GAGAATATTCTAG 1008 consensus_8030#1 TTCCGGTCCCCCATATTGTGCGGACGTTCCATGTACCTATAAAAATTGTTGCTCTGGTTG 339 consensus_8030#2 ATTTACAATTGTTCTATTTCACCTCTCAGGAAAATTCTGCAGTCCATATTGAACTATCGA 307 consensus_8030#3 AAGGTCACAGCGCCAATTTCACTACCTG-----ATGCTCATGTACA-ATCGGTCCACAGA 304 consensus_8030#4 ------------------------------------------------------------ consensus_8030#0 AATGTCGATGTATAGCTTCCCCATTGGATGAATAAGAAGGACTCCCTATGTGCCTAATGG 1068 consensus_8030#1 TTAGAAGGGGCATCGGCTTCGTGACTTTCGTAGAATCTCGGCTTTCATCATGAAGAGTCA 399 consensus_8030#2 ------------------------------------------------------------ consensus_8030#3 G----------------------------------------------------------- 305 consensus_8030#4 ------------------------------------------------------------ consensus_8030#0 TTGTCTGAAATGATGATTTACTCTCAGTCAAAAAACTATAAATACATGAGATTTCTGTAC 1128 consensus_8030#1 TAATTCTT---------------------------------------------------- 407 consensus_8030#2 ---------------------------------- consensus_8030#3 ---------------------------------- consensus_8030#4 ---------------------------------- consensus_8030#0 TATACTTTGACACCGTTTTGGGGAATAAAAGTTC 1162 consensus_8030#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||