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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 920 fasta sequence
[AAAAACAAAAAAACAAAACAAAACATTTTTTTGAGCGTATATATATATATTTATATATTGAAAAAAACCAAAAGAAAACCTTTTTTCCGATCGCTTTTACGCTGTTTGTAAGTGTATCAGTTTATTTTTTTCCGCTCATCTTGTGTCCTTACGCAAGTACGAGTGTATTTTCGACATGCACTCACACGTTTTATTTTTCCTCTTTTCCAGGACGGCTGGAAAAGAACGACGAAGTTTCGCAAGGAACCGAAATTTTCATTGTACTATATTTCTTTATTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGATCAGACGCTGCTAAACGAAGCAAGCTATCAGAAAAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGAGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTGTTTAAGTGGACTTGTTTAGCTGAAGGCTNTCGGTCATGCATCCGCACCAGATCACGTTTCAACACGACGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTCATAGAAAA-GTCCTCGATATATTGGTAACGAATCAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGGGAACGATCGAACATAGAAGGTGCTACTGGTATCCAGTTGTAAGACTAGAATATCCGTTGCATCTTCAATACTATCCGCTTGTGCTTTGAGTTGCACCGCTTCGCTCAAATGTGCAGTAGTGTATTGGCGCCTTAACGAGGCTGCTGGTGTTACGTCCCCAGATCGAGACCCCAATGACTCGTTGATCTCTCTTGCTTTTCTCACTTGGCTTAAAGAGTT]
[+] EMBL CD178950 [AAAAACAAAAAAACAAAACAAAACATTTTTTTGAGCGTATATATATATATTTATATATTGAAAAAAACCAAAAGAAAACCTTTTTTCCGATCGCTTTTACGCTGTTTGTAAGTGTATCAGTTTATTTTTTTCCGCTCATCTTGTGTCCTTACGCAAGTACGAGTGTATTTTCGACATGCACTCACACGTTTTATTTTTCCTCTTTTCCAGGACGGCTGGAAAAGAACGACGAAGTTTCGCAAGGAACCGAAATTTTCATTGTACTATATTTCTTTATTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGATCAGACGCTGCTAAACGAAGCAAGCTATCAGAAAAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGAGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTGTTTAAGTGGACTTGTTTAGCTGAAGGCTNTCGGTCATGCATCCGCACCAGATCACGTTTCAACACGACGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTCATAGAAAA GTCCTCGATATATTGGTAACGAATCA ]
[-] EMBL CD131266 [ TTACGCTGTTTGTAAGTGTATCAGTTTATTTTTTTCCGCTCATCTTGTGTCCTTACGCAAGTACGAGTGTATTTTCGACATGCACTCACACGTTTTATTTTTCCTCTTTTCCAGGACGGCTGGAAAAGAACGACGAAGTTTCGCAAGGAACCGAAATTTTCATTGTACTATATTTCTTTATTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTC ]
[-] EMBL CD194272 [ GCTGAAGGCTTTCGGTCATGCATCCGCACCAGATCACGTTTCAACACAGCGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTTATAGAAAAGGTCCTCGATATATTGGTAACGAATCAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGGGAACGATCGAACATAGAAGGTGCTACTGGTATCCAGTTGTAAGACTAGAATATCCGTTGCATCTTCAATACTATCCGCTTGTGCTTTGAGTTGCACCGCTTCGCTCAAATGTGCAGTAGTGTATTGGCGCCTTAACGAGGCTGCTGGTGTTACGTCCCCAGATCGAGACCCCAATGACTCGTTGATCTCTCT ]
[+] EMBL CD136074 [ GTGCTACTGGTGTCCAGTTGTAAAACTAGAATATCCGTTGCATCTTCAATACTATCCGCTTGTGCTTTGAGTTGCACCGCTTCGCTCAAATGTGCAGTAGTGTATTGGCGCCTTAACGAGGCTGCTGGTGTTACGTCCCCAGATCGAGACCCCAATGACTCGTTGATCTCTCTTGCTTTTCTCACTTGGCTTAAAGAGTT]
consensusID : consensus_8034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence
[GTTGGTGTTGCCGATTTATTCGAACCACATCAAGCTGCCAAAAAGCTAAACTTGCCAAAGATTCTTAACGTCAATTCTCAACGTGATCATAGTAATTCACGTGATGAATCTGAAGGTGGGTTCGGACTTATCCATACAGAGACTAAAATAAAGAGACGGTATTTTCTTGACGAAACAACCCAGAATTTTCAAGAAAACCATGCATCAATCTTTTCTAATTTCCAGCTCCGTAAAGGTAAGGAACTTTTTATGAAGTATTGTCATGGTATTAGCTAAGTAAATCCCAGAGTTTGATGCATAATATTTATACTTTAGTTTCAGATATCCGTCTATCAATTAAGGGACGAGTATACTGCGCAGCAGTTCGCTCTGTTCTACTTTACGGCTGTGAAACATGGCCATTAAGAGTAGAAGATACTCGCAAGTTACTAGTATTTGACCACAGATGTCTTGGAAATATTGCTCACATCTGCTGGGATCACCGGGTAAGTAATAGTGAGGTTAGATTCAGGGTATTAGGGAATGATGGTAAATCAGTTGATAAGGTGATGAATCTTCATCGACTGAGATGGTTGCGCCACGTGTTACGTACGCCTGAACACCGATTACCACGACGCG]
[+] EMBL CD078686 [GTTGGTGTTGCCGATTTATTCGAACCACATCAAGCTGCCAAAAAGCTAAACTTGCCAAAGATTCTTAACGTCAATTCTCAACGTGATCATAGTAATTCACGTGATGAATCTGAAGGTGGGTTCGGACTTATCCATACAGAGACTAAAATAAAGAGACGGTATTTTCTTGACGAAACAACCCAGAATTTTCAAGAAAACCATGCATCAATCTTTTCTAATTTCCAGCTCCGTAAAGGTAAGGAACTTTTTATGAAGTATTGTCATGGTATTAGCTAAGTAAATCCCAGAGTTTGATGCATAATATTTATACTTTAGTTTCAGATATCCGTCTATCAATTAAGGGACGAGTATACTGCGCAGCAGTTCGCTCTGTTCTACTTTACGGCTGTGAAACATGGCCATTAAGAGTAGAAGATACTCGCAAGTTACTAGTATTTGACCACAGATGTCTTGGAAATATTGCTCACATCTGCTGGGATCACCGGGTAAGTAATAGTGAGGTTAGATTCAGGGTATTAGGGAATGATGGTAAATCAGTTGATAAGGTGATGAATCTTCATCGACTGAGATGGTTGCGCCACGTGTTACGTACGCCTGAACACCGATTACCACGACGCG]
consensusID : consensus_8034#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence
[GAGTAGAAGATACTCTTAATTTACTAGTATTTGACCACAGATGCCTTAGAAATATTGCTCGCATCTGCTGGGATCACCAGGTAAGTAATAGTGAGATTAGACACAGGGTATTAGGGAATAATGGTAAATCAGTTGATGAGGCCATGAATCTTCATCGACTGAGATGGTTAGGCCACGCGTTACGTATGCCTGAACACCGATTACCACGACGTGCTATGCTGACTAGTGTAGGGGAGACAATAAAATAGGAAGCAATGTATTATTCTTTTTGGCAGAATTTTATGTTACCAAAAGCTCATAAAACTATTACTAGTGCTAAAAGTCGGGACAAATTGATATCAAATGTAAACAGATTTTTTTATTATTACGTTAGAAGATTAAATGTATGCTGAGAAAATTAGGATTTCGTAGCACCGAACTTATTATTTTGCANAACAAAGGAGGAAAGTAAGTCTAAAGAAGACAATAATCATAGATACCATGCCGTAATGAGAAACCTTCTATAAGGCAGTAAGGACAAACGTGTGGTACAATATTTATTAGCCAACCAAAATCAAATGGTAGTCAACACTGAAA]
[+] EMBL CD115970 [GAGTAGAAGATACTCTTAATTTACTAGTATTTGACCACAGATGCCTTAGAAATATTGCTCGCATCTGCTGGGATCACCAGGTAAGTAATAGTGAGATTAGACACAGGGTATTAGGGAATAATGGTAAATCAGTTGATGAGGCCATGAATCTTCATCGACTGAGATGGTTAGGCCACGCGTTACGTATGCCTGAACACCGATTACCACGACGTGCTATGCTGACTAGTGTAGGGGAGACAATAAAATAGGAAGCAATGTATTATTCTTTTTGGCAGAATTTTATGTTACCAAAAGCTCATAAAACTATTACTAGTGCTAAAAGTCGGGACAAATTGATATCAAATGTAAACAGATTTTTTTATTATTACGTTAGAAGATTAAATGTATGCTGAGAAAATTAGGATTTCGTAGCACCGAACTTATTATTTTGCANAACAAAGGAGGAAAGTAAGTCTAAAGAAGACAATAATCATAGATACCATGCCGTAATGAGAAACCTTCTATAAGGCAGTAAGGACAAACGTGTGGTACAATATTTATTAGCCAACCAAAATCAAATGGTAGTCAACACTGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8034#1 ------------------------------------------------------------
consensus_8034#2 ------------------------------------------------------------
consensus_8034#0 AAAAACAAAAAAACAAAACAAAACATTTTTTTGAGCGTATATATATATATTTATATATTG 60
consensus_8034#1 ----------------GTTGGTGTTGCCGATTTATTCGAACCACATCA-AGCTGCCAAAA 43
consensus_8034#2 -----------GAGTAGAAGATACTCTTAATTTACTAGTATTTGACCACAGATGCCTTAG 49
consensus_8034#0 AAAAAAACCAAAAGAAAACCTTTTTTCCGATCGCTTTTACGCTGTTTGTAAGTGTATCAG 120
* * ** * * ** *
consensus_8034#1 AGCTAAACTTGCCAAAGATTCTTAACGTCAATTCTCAACGTGATCATAGTAATTCACGTG 103
consensus_8034#2 AAATA---TTGCTCGCATCTGCTGGGATCACCAGGTAA-GTAATAGTGAGATTAGACACA 105
consensus_8034#0 T-TTATTTTTTTCCGCTCATCTTG-TGTCCTTACGCAA-GTACGAGT-GTATTTTCGACA 176
** ** * * ** ** ** * * *
consensus_8034#1 ATGAATCTGAAGGTGGGTTCGGACTTATCCATACAGAGACTAAAATAAAGAGACGGTATT 163
consensus_8034#2 GGGTATTAGGGAATAATGGTAAATCAGTTGATGAGGCCATGAATCTTCATCGACTGAGAT 165
consensus_8034#0 TGCACTCACACGTTTTATTTTTCCTCTTTTCCAGGACGGCTGGAAAAGAACGAC-GAAGT 235
* * * * *** * *
consensus_8034#1 TTCTTGACGAAACAACCCAGAATTTTCAAGAAAACCATGCATCAATCTTTTCTAATTTCC 223
consensus_8034#2 GGTTAGGCCACGCGTTACGTATGCCTGAACACCGAT-TACCACGACGTGCTATGCTGACT 224
consensus_8034#0 TTCGCAAGGAACCGAAATTTTCATTGTACTATATTTCTTTATTGCTACGTTGTACATTTT 295
* * * * * * *
consensus_8034#1 AGCTCCGTAA---AGGTAAGGAACTTTTTATGAAGTATTGTCATGGTATTAGCTAAGTAA 280
consensus_8034#2 AGTGTAGGGG---AGACAATAAAAT----AGGAAGCAATGT-ATTATTCTTTTTGGCAGA 276
consensus_8034#0 GGTCCCATAGTTTAAGGAAAGACGATCAGACGCTGCTAAACGAAGCAAGCTATCAGAAAA 355
* * ** * * * * * *
consensus_8034#1 ATCCCAGAGTTTGATG----CATAATATTTATACTTTAGTTTCAGATATCCGTCTATCAA 336
consensus_8034#2 ATTTTATGTTACCAAAAGCTCATAAAACTATTACT--AGTGCTAAAAGTCGG---GACAA 331
consensus_8034#0 GTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTG-GCTGGTCACGTCTTAGGGGC 414
* * * * * *** *
consensus_8034#1 TTAAGGGACGAGTATACTGCGCAGCAGTTCGCT-CTGTT-CTACTTTACGGCTGTGAAAC 394
consensus_8034#2 ATTGATATCAAATGTA------AACAGATTTTT-TTATTATTACGTTA-GAAGATTAAAT 383
consensus_8034#0 ATCACTACCTCACTAGGAGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAA-- 472
* * * * * ** * * **
consensus_8034#1 ATG-GCCATTAAGAGTAGAAGATACTCGCAAGTTACT-AGTATTTGACCACAGATGTCTT 452
consensus_8034#2 GTATGCTGAGAAAATTAGGATTTCGTAGCACCGAACTTATTATTTTGCANAACAAAGGAG 443
consensus_8034#0 -TAGCTCATTAAGTGTTCGACATTG-GATGCTGACCACGTTGTTTAAGTGGACTTGTTTA 530
* ** * * * * * *** *
consensus_8034#1 G--GAAATATTGCTCACATCTGCTGGGATCACCGGGTAAGTAATAGTGAGGTTAGATTCA 510
consensus_8034#2 G--AAAGTAAGTCTAAAGAAGACAATAATCATAG---ATACCATGCCGTAATGAGAAACC 498
consensus_8034#0 GCTGAAGGCTNTCGGTCATGCATCCGCACCAGATCACGTTTCAACACGACGTGGGACACA 590
* ** * * ** * * * ** *
consensus_8034#1 G---------GGTATTAGGGAA-TGATGGTAAATCAGTTGATAAGGTGATGAATCTTCAT 560
consensus_8034#2 T---------TCTATAAGGCAG-TAAGGACAAACGTGT-GGTACAATATTTA---TTAGC 544
consensus_8034#0 GCTCCTACGTTTCATTAGCCAGCTCATAGAAAAGTCCTCGATATATTGGTAA---CGAAT 647
** ** * * * *** * * ** * * *
consensus_8034#1 CGACTGAGATGGTTGCGCCACGTGTTACGT-ACGCCTGAACACCGATTACCACGACGCG- 618
consensus_8034#2 CAACCAAAAT--------CAAATGGTAGTC-AACACTGAAA------------------- 576
consensus_8034#0 CAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGGGAACGA 707
* * * * * ****
consensus_8034#1 ------------------------------------------------------------
consensus_8034#2 ------------------------------------------------------------
consensus_8034#0 TCGAACATAGAAGGTGCTACTGGTATCCAGTTGTAAGACTAGAATATCCGTTGCATCTTC 767
consensus_8034#1 ------------------------------------------------------------
consensus_8034#2 ------------------------------------------------------------
consensus_8034#0 AATACTATCCGCTTGTGCTTTGAGTTGCACCGCTTCGCTCAAATGTGCAGTAGTGTATTG 827
consensus_8034#1 ------------------------------------------------------------
consensus_8034#2 ------------------------------------------------------------
consensus_8034#0 GCGCCTTAACGAGGCTGCTGGTGTTACGTCCCCAGATCGAGACCCCAATGACTCGTTGAT 887
consensus_8034#1 ---------------------------------
consensus_8034#2 ---------------------------------
consensus_8034#0 CTCTCTTGCTTTTCTCACTTGGCTTAAAGAGTT 920
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||