These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8044#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 920 fasta sequence [TTTGGCACGAGGAGGTTGTGTAATCAGCTTACTTGAGCGGTATCCCAAGAATTTAATGAATACATACTAGTTGTTTGATTATCTGAATAACGACGTACAACTACTGACTTGATCTTTCTAGTTTCTGTTACAGCTTTGTTTTTTGTAATCACGTGTTTCTTTAAAGGGACAAACACATCAGAAATATAATAATAATTGACTGACGAGTTCTTATGTGTAAACTGCCGCTACGTCGTTAACGCTCTGGAACTTATTCCTCCTCATAATCCGAGTGCTTTGCATTCACTGAGTTATCGTCCGTGCGTACGTAATAGACTGATTGACCGCCAAACTTACTTCAGTCTTTCCCCACAGTTTACCGAAAACAACGTACTTCTAACCCAAATGGTCACCGTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAAAATAACA-CTGTGTACGATAG-TAGTGAGAGACGA-GTTGATGTGTACTCAGATGCGCAAGTAATATTGAGGATGATCAAAGAGTCTTCGAAAATTAAATTGGGATGTGCTTCACGTACTTCTGCTATCAGTGTTGCTCGACAACTTCTACAAGCTCTTAATTGGTCAGATCTATTTGATTACACAGAAATCTACCCTGGTTCCAAACTGCTCACTTTAAAAGATTCATGATTATCTGGTATAGATATGCAGAATGTATTTTTCGATGATGAACTCGTACATTATGACATTCTAATTAGTGTCATGTATTTAGTGACATGGATACATNAATCTTTGAAGATGCTTANAAATTCACACAAGAGAATCTGATTTAAATGACTAGTTTATGATTATCCGCAAAGGAATATTTTCTGAAA] [+] EMBL CD079832 [TTTGGCACGAGGAGGTTGTGTAATCAGCTTACTTGAGCGGTATCCCAAGAATTTAATGAATACATACTAGTTGTTTGATTATCTGAATAACGACGTACAACTACTGACTTGATCTTTCTAGTTTCTGTTACAGCTTTGTTTTTTGTAATCACGTGTTTCTTTAAAGGGACAAACACATCAGAAATATAATAATAATTGACTGACGAGTTCTTATGTGTAAACTGCCGCTACGTCGTTAACGCTCTGGAACTTATTCCTCCTCATAATCCGAGTGCTTTGCATTCACTGAGTTATCGTCCGTGCGTACGTAATAGACTGATTGACCGCCAAACTTACTTCAGTCTTTCCCCACAGTTTACCGAAAACAACGTACTTCTAACCCAAATGGTCACCGTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAAAATAACA CTGTGTACGATAG TAGTGAGAGACGA GTTGATGTGTACTCAGATGCGCAAGTAATATTGAGGATGATCAAAGAGTCTTCGAAAATTAAATTGGGATGTGCTTCACGTACTTCTGCTATCAGTGTTGCTCGACAACTTCTACAAGCTCTTAATTGGTCAGATCTATTTGATTACACAGAAATCTACCCTGGTTCCAAACTGCTCACTTTAAAAGATTCATGATTATCTGGTATAGATATGCAGAATGTATTTTTCGATGATGAACTCGTACATTATGACATTCTAATTAGTGTCATGTATTTAGTGACATGGATACATNAATCTTTGAAGATGCTTANAAATTCACACAAGAGAATCTGATTTAAATGACTAGTTTATGATTATCCGCAAAGGAATATTTTCTGAAA] [-] EMBL CD157280 [ atctgTCCATTCATACAACAAAATAACAGCTGTGTACGATAGCTAGTGAGAGACGACGTTGATGTGTACTCAGATGCGCAAGTAATATTGAGGATGATCAAAGAGTCTTCGAAAA ] consensusID : consensus_8044#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [TCGAGGCCCAGAATCGGCACGAGGAGTCCTTCAAGGTTGTGTAATCAGCTTACTTGAGCGGTATCCCAAGAATTTAATGAATACATACTAGTTGTTTGATTATCTGAATAACGACGTACAACTACTGACTTGATCTTTCTAGTTTCTGTTACAGCTTTGTTTTTTGTAATCACGTGTTTCTTTAAAGGGACAAACACATCAGAAATATAATAATAATTGACTGACGAGTTCTTATGTGTAAACTGCCGCTACGTCGTTAACGCTCTGGAACTTATTCCTCCTCATAATCCGAGTGCTTTGCATTCACTGAGTTATCGTCCGTGCTTTACCGAAAACAACGTACTTCTAACCCAAATGGTCACCGTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGA] [+] EMBL CD083850 [TCGAGGCCCAGAATCGGCACGAGGAGTCCTTCAAGGTTGTGTAATCAGCTTACTTGAGCGGTATCCCAAGAATTTAATGAATACATACTAGTTGTTTGATTATCTGAATAACGACGTACAACTACTGACTTGATCTTTCTAGTTTCTGTTACAGCTTTGTTTTTTGTAATCACGTGTTTCTTTAAAGGGACAAACACATCAGAAATATAATAATAATTGACTGACGAGTTCTTATGTGTAAACTGCCGCTACGTCGTTAACGCTCTGGAACTTATTCCTCCTCATAATCCGAGTGCTTTGCATTCACTGAGTTATCGTCCGTGCTTTACCGAAAACAACGTACTTCTAACCCAAATGGTCACCGTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGA] consensusID : consensus_8044#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [TTGGCCTCGAGGCAGATCGGCACGAGGCGGCTCCTAAACTTATCGTGTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAGTGAGGCTCTTATAAAATTTTTCTCAGGAATGGTGATCTGTTAGAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGATGCGCAAGTATTATTGAGGATGATCAAAGAGTCTTCGAAAATTAAATTGGGATGTGCTTCACGTACTTCTGCTATCAGTGTTGCTCGACAACTTCTACAAGCTCTTAATTGGTCAGATTTATTTGATTACACAGAAATATACCCTGGTTCCAAAACTGCTCACTTTAAAAGATTTCATGAATTATCTGGTATAGACTATGCAGATATGTTATTTTTTGATGATGAAACTCGTAACATTCATG] [+] EMBL CD084019 [TTGGCCTCGAGGCAGATCGGCACGAGGCGGCTCCTAAACTTATCGTGTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAGTGAGGCTCTTATAAAATTTTTCTCAGGAATGGTGATCTGTTAGAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGATGCGCAAGTATTATTGAGGATGATCAAAGAGTCTTCGAAAATTAAATTGGGATGTGCTTCACGTACTTCTGCTATCAGTGTTGCTCGACAACTTCTACAAGCTCTTAATTGGTCAGATTTATTTGATTACACAGAAATATACCCTGGTTCCAAAACTGCTCACTTTAAAAGATTTCATGAATTATCTGGTATAGACTATGCAGATATGTTATTTTTTGATGATGAAACTCGTAACATTCATG] consensusID : consensus_8044#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 353 fasta sequence [TTATCGTCCGTGCGTACGTAATAGACTGATTGACCGCCAAACTTACTTCAGTCTTTCTCCACAGTTTACCGAAAACAACGTACTTCTAACCCAAATGGTCACCTTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCCCCATTCATACAAAAGTGAGGCTCTCATAAAATTTTTATCAGGAATGGTGATCTGTTAGAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGATGCGCAAGTAATAATTGAGGATGATCAAAGAGTCTTCGAAAA] [-] EMBL CD157162 [TTATCGTCCGTGCGTACGTAATAGACTGATTGACCGCCAAACTTACTTCAGTCTTTCTCCACAGTTTACCGAAAACAACGTACTTCTAACCCAAATGGTCACCTTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCCCCATTCATACAAAAGTGAGGCTCTCATAAAATTTTTATCAGGAATGGTGATCTGTTAGAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGATGCGCAAGTAATAATTGAGGATGATCAAAGAGTCTTCGAAAA] [-] EMBL CD157190 [TTATCGTCCGTGCGTACGTAATAGACTGATTGGCCGCCAAACTTACTTCAGTCTTTCTCCACAGTTTACCGAAAACAACGTACTTCTAACCCAAATGGTCACCGTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAGTGAGGCTCTTATAAAATTTTTCTCAGGAATGGTGATCTGTTAGAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGATGCGCAAGTAAT ATTGAGGATGATCAAAGAGTCTTCGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8044#2 ------------------------------------------------------------ consensus_8044#3 ------------------------------------------------------------ consensus_8044#0 TTTGGCACGAGGAGGTTGTGTAATCAGCTTACTTGAGCGGTATCCCAAGAATTTAATGAA 60 consensus_8044#1 ------------------------------------------------------------ consensus_8044#2 ------------------------------------------------------------ consensus_8044#3 ------------------------------------------------------------ consensus_8044#0 TACATACTAGTTGTTTGATTATCTGAATAACGACGTACAACTACTGACTTGATCTTTCTA 120 consensus_8044#1 ------------------------------------------------------------ consensus_8044#2 ------------------------------------------------------------ consensus_8044#3 ------------------------------------------------------------ consensus_8044#0 GTTTCTGTTACAGCTTTGTTTTTTGTAATCACGTGTTTCTTTAAAGGGACAAACACATCA 180 consensus_8044#1 ------------------------------------------------------------ consensus_8044#2 ------------------------------------------------------------ consensus_8044#3 ------------------------------------------------------------ consensus_8044#0 GAAATATAATAATAATTGACTGACGAGTTCTTATGTGTAAACTGCCGCTACGTCGTTAAC 240 consensus_8044#1 ------------------------------------------------------------ consensus_8044#2 ------------------------------------------------------------ consensus_8044#3 --------------------------------------------------TTATCGTCCG 10 consensus_8044#0 GCTCTGGAACTTATTCCTCCTCATAATCCGAGTGCTTTGCATTCACTGAGTTATCGTCCG 300 consensus_8044#1 -----------------------------------------------------TCGAGGC 7 consensus_8044#2 ------------------------------------------------------------ consensus_8044#3 TGCGTACGTAATAGACTGATTGACCGCCAAACTTACTTCAGTCTTTCTCCACAGTTTACC 70 consensus_8044#0 TGCGTACGTAATAGACTGATTGACCGCCAAACTTACTTCAGTCTTTCCCCACAGTTTACC 360 consensus_8044#1 CCAGAATCGGCACGAGGAGTCCTTCAAGGTTGTGTAATCAGCTTACTTGAGCGGTATCCC 67 consensus_8044#2 ---------------------------TTGGCCTCGAGGCAGATCGGCACGAG---GCGG 30 consensus_8044#3 GAAAACAACGTACTTCTAACCCAAATGGTCACCTTGGATTTCCTAAGTGCATTCTCTCGG 130 consensus_8044#0 GAAAACAACGTACTTCTAACCCAAATGGTCACCGTGGATTTCCTAAGTGCATTCTCTCGG 420 consensus_8044#1 AAGAATTTAATGAATACATACTAGTTGTTTGATT--ATCTGAATAACGACGTACAACTAC 125 * * * consensus_8044#2 CT-CCTAAACTTATCGTGT-CGATCTTGACTTCACTCTTTGGCCTC-TGTGGTGCGACAC 87 consensus_8044#3 CTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTC-TGTGGTGCGACAC 189 consensus_8044#0 CTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTC-TGTGGTGCGACAC 479 consensus_8044#1 TGACTTGATCTTTCTAGTTTCTGTTACAGCTTTGTTTTTTGTAATCACGTGTTTCTTTAA 185 * * * *** * * * *** * **** ** *** * * * consensus_8044#2 TCACGTTTATCCTCCATTCATACAAAAGTGAGGCTCTTATAAAATTTT-TCTCAGGAATG 146 consensus_8044#3 TCACGTTTATCCCCCATTCATACAAAAGTGAGGCTCTCATAAAATTTT-TATCAGGAATG 248 consensus_8044#0 TCACGTTTATCCTCCATTCATACAAAA--------------------------------- 506 consensus_8044#1 AGGGACAAACACATCAGAAATATAATAATAATTGACTGACGAGTTCTTATGTGTAAACTG 245 * * ** *** ** * consensus_8044#2 GTGATCTGTTAGAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTC 206 consensus_8044#3 GTGATCTGTTAGAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTC 308 consensus_8044#0 ------------AAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTC 554 consensus_8044#1 CCGCTACGTCGTTAACGCTCTGGAACTTATTCCTCCTCATAATCCGAGTGCTTTGCATTC 305 ** * * * * * * * ** * ** * ** consensus_8044#2 AGATGCGCAAGTATTA-TTGAGGATGATCAAAGAGTCTTCGAAAATTAAATTGGGATGTG 265 consensus_8044#3 AGATGCGCAAGTAATAATTGAGGATGATCAAAGAGTCTTCGAAAA--------------- 353 consensus_8044#0 AGATGCGCAAGTAATA-TTGAGGATGATCAAAGAGTCTTCGAAAATTAAATTGGGATGTG 613 consensus_8044#1 A----CTGAGTTATCGTCCGTGCTTTACCGAAAA--CAACGTACTTCTAACCCAAATGGT 359 * * * ** * * * * * ** * * ** * consensus_8044#2 CTTCACGTACTTCTGCTATCAGTGTT----GCTCGACAACTTCTACAAGCTCTTAATTGG 321 consensus_8044#3 ------------------------------------------------------------ consensus_8044#0 CTTCACGTACTTCTGCTATCAGTGTT----GCTCGACAACTTCTACAAGCTCTTAATTGG 669 consensus_8044#1 CACCGTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGA 419 consensus_8044#2 TCAGATTTATTTGATTACACAGAAATATACCCTGGTTCCAAAACTGCTCACTTTAAAAGA 381 consensus_8044#3 ------------------------------------------------------------ consensus_8044#0 TCAGATCTATTTGATTACACAGAAATCTACCCTGGTTCCAAA-CTGCTCACTTTAAAAGA 728 consensus_8044#1 CTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAAAA 479 consensus_8044#2 TTTCATGAATTATCTGGTATAGACTATGCAGATATGTTATTTTTTGATGA---TGAAACT 438 consensus_8044#3 ------------------------------------------------------------ consensus_8044#0 TT-CATGA-TTATCTGGTATAGATATGCAGAATGTATTTTTCGATGATGAACTCGTACAT 786 consensus_8044#1 TAACAC----TGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGA-------- 527 consensus_8044#2 CGTAACATTCATG----------------------------------------------- 451 consensus_8044#3 ------------------------------------------------------------ consensus_8044#0 TATGACATTCTAATTAGTGTCATGTATTTAGTGACATGGATACATNAATCTTTGAAGATG 846 consensus_8044#1 ------------------------------------------------------------ consensus_8044#2 ------------------------------------------------------------ consensus_8044#3 ------------------------------------------------------------ consensus_8044#0 CTTANAAATTCACACAAGAGAATCTGATTTAAATGACTAGTTTATGATTATCCGCAAAGG 906 consensus_8044#1 ------------------------------------------------------------ consensus_8044#2 -------------- consensus_8044#3 -------------- consensus_8044#0 AATATTTTCTGAAA 920 consensus_8044#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||