cluster # 8045

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Schistosoma mansoni
cluster # 8045 cluster # 8045 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8045#0 length = 698 sequences # 5

consensus_8045#1 length = 364 sequences # 1

consensusID : consensus_8045#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 698
fasta sequence

                              [TTTTTTTTTTTTTTTTGCATTAAAATGAAAATTTATTTCATAATATGAAAAGTTTTCCA-AGTATTTATAAGGAATATGGAATATAAGTATAGATCTACAAGATCCGTTAATAAATAAATAATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGTTCATAATCAATTACAATAGGTGATGATTTGGGTA-GTGTACAATTCTTTTTAACTGATGATTCACGTGCAGCATCCAATAGAACATTGATAAGATAACGATCTTGAAATGGTTCTGGATTTAAACTTCGTCCAGCTATACCATGACCATGAACGGGTGGCCATGGATTTCCGTGCAGTTCCAATATTCCAAATGATTTAGTACCACAAGGCTTTATCGGATAAACTGGAGGAAAAATCTGAAACAAACTAGTGTATGAGC-GTTCATAAAATCGATATCTTGGTACAAATACCTTGAATAATTTTTCAACTAAACGTTCCTCAGTTAGCCAAAACACAGAAAGCTCTAGAATACCAAGATTGAGTTTATCGTTGATTTCTGGTTCCTTAGAATTTTTCCAAAGCTCAAATAGCGAAACGAGATCCTGTTCAGCTGATGCCAAGATGCCTTCCTGAATCAAACGCTCAGCGTATAATCGAGTTTCGATAGCATGTGACCATGGTAATTCGACCCTCGTGCCAAATTTTTGG]

[+] EMBL AI395037             [TTTTTTTTTTTTTTTTTCATTAAAATGAAAATTTATTTCATAATATGAAAAGTTTTCCA AGTATTTATAAGGAATATGGAATATAAGTATAGATCTACAAGATCCGTTAATAAATAAATAATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGTTCATAATCAATTACAATAGGTGATGATTTGGGTA GTGTACAATTCTTTTTAACTGATGATTCACGTGCAGCATCCAATAGAACATTGATAAGATAACGATCTTGAAATGGTTCTGGATTTAAACTTCGTCCAGCTATACCATGACCATGAACGGGTGGCCATGGATTTCCGTGCAGTTCCAATATTCCAAATGA TTAGTACCACAAGGCTTTATCGGATAAACTGGAGGAAAAATCTGAAACAAACTAGTGTATGAGCGGTCCATA                                                                                                                                                                                                                                                                      ]
[+] EMBL AI394828             [  TTTTTTTTTTTTTT   TTAAAATGAAAATNTATTTCATAATATGAAAAGTTTTCCA AGTATTTATAAGGAATATGGAATATAAGTATAGATCTACAAGATCCGTTAATAAATAAATAATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGTTCATAATCAATTACAATAGGTGATGATTTGGGTA GTGTACAATTCTNTTTAACGGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD073806             [  gttaaaTTTTTTTTGCATTAAAATGAAAATTTATTTTTTTATATGAAAAGTTTTCCACAGTATTTATAAGGAATATGGAATATAAGTATAGATCTACAAGATCCGTTAATAAATAAATAATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGTTCATAATCAATTACAATAGGTGATGATTTGGGTA GTGTACAATTCTTTTTAACTGATGATTCACGTGCAGCATCCAATAGAACATTGATAAGATAACGATCTTGAAATGGTTCTGGATTTAAACTTCGTCCAGCTATACCATGACCATGAACGGGTGGCCATGGATTTCCGTGCAGTTCCAATATTCCAAATGATTTAGTACCACAAGGCTTTATCGGATAAACTGGAGGAAAAATCTGAAACAAACTAGTGTATGAGC GTTCATAAAATCGATATCTTGGTACAAATACCTTGAATAATTTTTCAACTAAACGTTCCTCAGTTAGCCAAAACACAGAAAGCTCTAGAATACCAAGATTGAGTTTATCGTTGATTTCTGGTTCCTTAGAATTTTTCCAAAGCTCAAATAGCGAAACGAGATCCTGTTCAGCTGATGCCAAGATGCCTTCCTGAATCAAACGCTCAGCGTATAATCGAGTTTCGATAGCATGTGACCATGGTAATTCG                     ]
[+] EMBL AI394956             [         TTTTTTTGCATTAAAATGAAAATTTATTTCATAATATGAAAAGTTTTCCA AGTATTTATAAGGAATATGGAATATAAGTATAGATCTACAAGATCCGTTAATAAATAAATAGTAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGGTCATAATCAATTACACTACGTGATGAATTGGGTACGAGGACAAGTCTct                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD079540             [                          GANAATTTATTTCATAATATGAAAAGTTTTCCA AGTATTTATAAGGAATATGGAATATAAGTATAGATCTACAAGATCCGTTAATAAATAAATAATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGTTCATAATCAATTACAATAGGTGATGATTTGGGTA GTGTACAATTCTTTTTAACTGATGATTCACGTGCAGCATCCAATAGAACATTGATAAGATAACGATCTTGAAATGGTTCTGGATTTAAACTTCGTCCAGCTATACCATGACCATGAACGGGTGGCCATGGATTTCCGTGCAGTTCCAATATTCCAAATGATTTAGTACCACAAGGCTTTATCGGATAAACTGGAGGAAAAATCTGAAACAAACTAGTGTATGAGC GTTCATAAAATCGATATCTTGGTACAAATACCTTGAATAATTTTTCAACTAAACGTTCCTCAGTTAGCCAAAACACAGAAAGCTCTAGAATACCAAGATTGAGTTTATCGTTGATTTCTGGTTCCTTAGAATTTTTCCAAAGCTCAAATAGCGAAACGAGATCCTGTTCAGCTGATGCCAAGATGCCTTCCTGAATCAAACGCTCAGCGTATAATCGAGTTTCGATAGCATGTGACCATGGTAATTCGACCCTCGTGCCAAATTTTTGG]




>consensus_8045#0
TTTTTTTTTTTTTTTTGCATTAAAATGAAAATTTATTTCATAATATGAAAAGTTTTCCAA
GTATTTATAAGGAATATGGAATATAAGTATAGATCTACAAGATCCGTTAATAAATAAATA
ATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGTTCATAATCAA
TTACAATAGGTGATGATTTGGGTAGTGTACAATTCTTTTTAACTGATGATTCACGTGCAG
CATCCAATAGAACATTGATAAGATAACGATCTTGAAATGGTTCTGGATTTAAACTTCGTC
CAGCTATACCATGACCATGAACGGGTGGCCATGGATTTCCGTGCAGTTCCAATATTCCAA
ATGATTTAGTACCACAAGGCTTTATCGGATAAACTGGAGGAAAAATCTGAAACAAACTAG
TGTATGAGCGTTCATAAAATCGATATCTTGGTACAAATACCTTGAATAATTTTTCAACTA
AACGTTCCTCAGTTAGCCAAAACACAGAAAGCTCTAGAATACCAAGATTGAGTTTATCGT
TGATTTCTGGTTCCTTAGAATTTTTCCAAAGCTCAAATAGCGAAACGAGATCCTGTTCAG
CTGATGCCAAGATGCCTTCCTGAATCAAACGCTCAGCGTATAATCGAGTTTCGATAGCAT
GTGACCATGGTAATTCGACCCTCGTGCCAAATTTTTGG

consensusID : consensus_8045#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence

                              [TTTTTTTTTTTTTTTTCTGTAAAAAAGATTTATTTTAAACACACAGAGTTGCACACTACATAGAGAAAATGTCAAACTTTTAAAGGCTTATAAGTAATAAGGCTTATACTAATCTATTGAAACTAACAATTTCTTTCAACAAATCGAAAAATCAAAAAGAGTACATGCATTAAACTGAAAATTTATTTCATAATATGAAAAGTTTTCCAAGTATTTATAAGGAATATGGAATATAAATATAGATCTACAAGATCCGTTAATAAATAGATAATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGCTCATAATCAATTACAATAAGTGATGAATTGGGTATGGTCACTTC]

[+] EMBL AI394910             [TTTTTTTTTTTTTTTTCTGTAAAAAAGATTTATTTTAAACACACAGAGTTGCACACTACATAGAGAAAATGTCAAACTTTTAAAGGCTTATAAGTAATAAGGCTTATACTAATCTATTGAAACTAACAATTTCTTTCAACAAATCGAAAAATCAAAAAGAGTACATGCATTAAACTGAAAATTTATTTCATAATATGAAAAGTTTTCCAAGTATTTATAAGGAATATGGAATATAAATATAGATCTACAAGATCCGTTAATAAATAGATAATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGCTCATAATCAATTACAATAAGTGATGAATTGGGTATGGTCACTTC]




>consensus_8045#1
TTTTTTTTTTTTTTTTCTGTAAAAAAGATTTATTTTAAACACACAGAGTTGCACACTACA
TAGAGAAAATGTCAAACTTTTAAAGGCTTATAAGTAATAAGGCTTATACTAATCTATTGA
AACTAACAATTTCTTTCAACAAATCGAAAAATCAAAAAGAGTACATGCATTAAACTGAAA
ATTTATTTCATAATATGAAAAGTTTTCCAAGTATTTATAAGGAATATGGAATATAAATAT
AGATCTACAAGATCCGTTAATAAATAGATAATAGATATTTACATAAGTGTATCATATACA
ACTAATTGATTGGACGTAGCTCATAATCAATTACAATAAGTGATGAATTGGGTATGGTCA
CTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8045#0      TTTTTTTTTTTTTTTTGCATTAAAATGAAAATTTATTTCATAATATGAAAAGTTTTCCAA 60
consensus_8045#1      -TTTTTTTTTTTTTTTTCTGTAAAA--AAGATTTATTTTA-AACACACAGAGTTGCACA- 55
                       *************** *  *****  ** ******** * ** *   * ****   ** 

consensus_8045#0      GTATTTATAAGGAATATGGAATATAAGTATAGATCTACAAGATCCGTTAATAAATAAATA 120
consensus_8045#1      --CTACATAGAGAAAATGTCAAACTTTTAAAGGCTTATAAG---TAATAAGGCTTATACT 110
                         *  ***  *** ***  * *    ** **   ** ***      ***    ** *  

consensus_8045#0      ATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGTTCATA-ATCA 179
consensus_8045#1      A-ATCTATTGAAACTAACA-ATTTCTTTCAACAAATCGAAAAATCAAAAAGAGTACATGC 168
                      * *  **** * *  *    **    * **** *** **     *  *     ** **  

consensus_8045#0      ATTACAATAGGTGATGATTTGGGTAGTGTACAATTCTTTTTAACTGATGATTCACGTGCA 239
consensus_8045#1      ATTAAACTGAAAATTTATTTCA-TAATATGAAAAGTTTTCCAAGT----ATTTATAAGGA 223
                      **** * *      * ****   ** * *  **   ***  ** *    *** *   * *

consensus_8045#0      GCATCCAATA-GAACATTGATAAGATAACGATCTTGAAATGGTTCTGGATTTAAACTTCG 298
consensus_8045#1      ATATGGAATATAAATATAGATCT-ACAA-GATCCGTTAATAAATAGATAATAGATATTTA 281
                        **  ****  ** ** ***   * ** ****    ***   *    * *  *  **  

consensus_8045#0      TCCAGCTATACCATGACCA--TGAACGGGTGGCCATGGATTTCCGTGCAGTTCCAATATT 356
consensus_8045#1      CATAAGTGTATCATATACAACTAATTGATTGGACGTAGCTCATAAT-CAATTACAATAAG 340
                         *  * ** ***   **  * *  *  *** * * * *     * ** ** *****  

consensus_8045#0      CCAAATGATTTAGTACCACAAGGCTTTATCGGATAAACTGGAGGAAAAATCTGAAACAAA 416
consensus_8045#1      T-GATGAATTGGGTATGGTCA--CTTC--------------------------------- 364
                         *   ***  ***     *  ***                                  

consensus_8045#0      CTAGTGTATGAGCGTTCATAAAATCGATATCTTGGTACAAATACCTTGAATAATTTTTCA 476
consensus_8045#1      ------------------------------------------------------------
                                                                                  

consensus_8045#0      ACTAAACGTTCCTCAGTTAGCCAAAACACAGAAAGCTCTAGAATACCAAGATTGAGTTTA 536
consensus_8045#1      ------------------------------------------------------------
                                                                                  

consensus_8045#0      TCGTTGATTTCTGGTTCCTTAGAATTTTTCCAAAGCTCAAATAGCGAAACGAGATCCTGT 596
consensus_8045#1      ------------------------------------------------------------
                                                                                  

consensus_8045#0      TCAGCTGATGCCAAGATGCCTTCCTGAATCAAACGCTCAGCGTATAATCGAGTTTCGATA 656
consensus_8045#1      ------------------------------------------------------------
                                                                                  

consensus_8045#0      GCATGTGACCATGGTAATTCGACCCTCGTGCCAAATTTTTGG 698
consensus_8045#1      ------------------------------------------