These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 698 fasta sequence [TTTTTTTTTTTTTTTTGCATTAAAATGAAAATTTATTTCATAATATGAAAAGTTTTCCA-AGTATTTATAAGGAATATGGAATATAAGTATAGATCTACAAGATCCGTTAATAAATAAATAATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGTTCATAATCAATTACAATAGGTGATGATTTGGGTA-GTGTACAATTCTTTTTAACTGATGATTCACGTGCAGCATCCAATAGAACATTGATAAGATAACGATCTTGAAATGGTTCTGGATTTAAACTTCGTCCAGCTATACCATGACCATGAACGGGTGGCCATGGATTTCCGTGCAGTTCCAATATTCCAAATGATTTAGTACCACAAGGCTTTATCGGATAAACTGGAGGAAAAATCTGAAACAAACTAGTGTATGAGC-GTTCATAAAATCGATATCTTGGTACAAATACCTTGAATAATTTTTCAACTAAACGTTCCTCAGTTAGCCAAAACACAGAAAGCTCTAGAATACCAAGATTGAGTTTATCGTTGATTTCTGGTTCCTTAGAATTTTTCCAAAGCTCAAATAGCGAAACGAGATCCTGTTCAGCTGATGCCAAGATGCCTTCCTGAATCAAACGCTCAGCGTATAATCGAGTTTCGATAGCATGTGACCATGGTAATTCGACCCTCGTGCCAAATTTTTGG] [+] EMBL AI395037 [TTTTTTTTTTTTTTTTTCATTAAAATGAAAATTTATTTCATAATATGAAAAGTTTTCCA AGTATTTATAAGGAATATGGAATATAAGTATAGATCTACAAGATCCGTTAATAAATAAATAATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGTTCATAATCAATTACAATAGGTGATGATTTGGGTA GTGTACAATTCTTTTTAACTGATGATTCACGTGCAGCATCCAATAGAACATTGATAAGATAACGATCTTGAAATGGTTCTGGATTTAAACTTCGTCCAGCTATACCATGACCATGAACGGGTGGCCATGGATTTCCGTGCAGTTCCAATATTCCAAATGA TTAGTACCACAAGGCTTTATCGGATAAACTGGAGGAAAAATCTGAAACAAACTAGTGTATGAGCGGTCCATA ] [+] EMBL AI394828 [ TTTTTTTTTTTTTT TTAAAATGAAAATNTATTTCATAATATGAAAAGTTTTCCA AGTATTTATAAGGAATATGGAATATAAGTATAGATCTACAAGATCCGTTAATAAATAAATAATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGTTCATAATCAATTACAATAGGTGATGATTTGGGTA GTGTACAATTCTNTTTAACGGATG ] [+] EMBL CD073806 [ gttaaaTTTTTTTTGCATTAAAATGAAAATTTATTTTTTTATATGAAAAGTTTTCCACAGTATTTATAAGGAATATGGAATATAAGTATAGATCTACAAGATCCGTTAATAAATAAATAATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGTTCATAATCAATTACAATAGGTGATGATTTGGGTA GTGTACAATTCTTTTTAACTGATGATTCACGTGCAGCATCCAATAGAACATTGATAAGATAACGATCTTGAAATGGTTCTGGATTTAAACTTCGTCCAGCTATACCATGACCATGAACGGGTGGCCATGGATTTCCGTGCAGTTCCAATATTCCAAATGATTTAGTACCACAAGGCTTTATCGGATAAACTGGAGGAAAAATCTGAAACAAACTAGTGTATGAGC GTTCATAAAATCGATATCTTGGTACAAATACCTTGAATAATTTTTCAACTAAACGTTCCTCAGTTAGCCAAAACACAGAAAGCTCTAGAATACCAAGATTGAGTTTATCGTTGATTTCTGGTTCCTTAGAATTTTTCCAAAGCTCAAATAGCGAAACGAGATCCTGTTCAGCTGATGCCAAGATGCCTTCCTGAATCAAACGCTCAGCGTATAATCGAGTTTCGATAGCATGTGACCATGGTAATTCG ] [+] EMBL AI394956 [ TTTTTTTGCATTAAAATGAAAATTTATTTCATAATATGAAAAGTTTTCCA AGTATTTATAAGGAATATGGAATATAAGTATAGATCTACAAGATCCGTTAATAAATAAATAGTAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGGTCATAATCAATTACACTACGTGATGAATTGGGTACGAGGACAAGTCTct ] [-] EMBL CD079540 [ GANAATTTATTTCATAATATGAAAAGTTTTCCA AGTATTTATAAGGAATATGGAATATAAGTATAGATCTACAAGATCCGTTAATAAATAAATAATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGTTCATAATCAATTACAATAGGTGATGATTTGGGTA GTGTACAATTCTTTTTAACTGATGATTCACGTGCAGCATCCAATAGAACATTGATAAGATAACGATCTTGAAATGGTTCTGGATTTAAACTTCGTCCAGCTATACCATGACCATGAACGGGTGGCCATGGATTTCCGTGCAGTTCCAATATTCCAAATGATTTAGTACCACAAGGCTTTATCGGATAAACTGGAGGAAAAATCTGAAACAAACTAGTGTATGAGC GTTCATAAAATCGATATCTTGGTACAAATACCTTGAATAATTTTTCAACTAAACGTTCCTCAGTTAGCCAAAACACAGAAAGCTCTAGAATACCAAGATTGAGTTTATCGTTGATTTCTGGTTCCTTAGAATTTTTCCAAAGCTCAAATAGCGAAACGAGATCCTGTTCAGCTGATGCCAAGATGCCTTCCTGAATCAAACGCTCAGCGTATAATCGAGTTTCGATAGCATGTGACCATGGTAATTCGACCCTCGTGCCAAATTTTTGG] consensusID : consensus_8045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [TTTTTTTTTTTTTTTTCTGTAAAAAAGATTTATTTTAAACACACAGAGTTGCACACTACATAGAGAAAATGTCAAACTTTTAAAGGCTTATAAGTAATAAGGCTTATACTAATCTATTGAAACTAACAATTTCTTTCAACAAATCGAAAAATCAAAAAGAGTACATGCATTAAACTGAAAATTTATTTCATAATATGAAAAGTTTTCCAAGTATTTATAAGGAATATGGAATATAAATATAGATCTACAAGATCCGTTAATAAATAGATAATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGCTCATAATCAATTACAATAAGTGATGAATTGGGTATGGTCACTTC] [+] EMBL AI394910 [TTTTTTTTTTTTTTTTCTGTAAAAAAGATTTATTTTAAACACACAGAGTTGCACACTACATAGAGAAAATGTCAAACTTTTAAAGGCTTATAAGTAATAAGGCTTATACTAATCTATTGAAACTAACAATTTCTTTCAACAAATCGAAAAATCAAAAAGAGTACATGCATTAAACTGAAAATTTATTTCATAATATGAAAAGTTTTCCAAGTATTTATAAGGAATATGGAATATAAATATAGATCTACAAGATCCGTTAATAAATAGATAATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGCTCATAATCAATTACAATAAGTGATGAATTGGGTATGGTCACTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8045#0 TTTTTTTTTTTTTTTTGCATTAAAATGAAAATTTATTTCATAATATGAAAAGTTTTCCAA 60 consensus_8045#1 -TTTTTTTTTTTTTTTTCTGTAAAA--AAGATTTATTTTA-AACACACAGAGTTGCACA- 55 *************** * ***** ** ******** * ** * * **** ** consensus_8045#0 GTATTTATAAGGAATATGGAATATAAGTATAGATCTACAAGATCCGTTAATAAATAAATA 120 consensus_8045#1 --CTACATAGAGAAAATGTCAAACTTTTAAAGGCTTATAAG---TAATAAGGCTTATACT 110 * *** *** *** * * ** ** ** *** *** ** * consensus_8045#0 ATAGATATTTACATAAGTGTATCATATACAACTAATTGATTGGACGTAGTTCATA-ATCA 179 consensus_8045#1 A-ATCTATTGAAACTAACA-ATTTCTTTCAACAAATCGAAAAATCAAAAAGAGTACATGC 168 * * **** * * * ** * **** *** ** * * ** ** consensus_8045#0 ATTACAATAGGTGATGATTTGGGTAGTGTACAATTCTTTTTAACTGATGATTCACGTGCA 239 consensus_8045#1 ATTAAACTGAAAATTTATTTCA-TAATATGAAAAGTTTTCCAAGT----ATTTATAAGGA 223 **** * * * **** ** * * ** *** ** * *** * * * consensus_8045#0 GCATCCAATA-GAACATTGATAAGATAACGATCTTGAAATGGTTCTGGATTTAAACTTCG 298 consensus_8045#1 ATATGGAATATAAATATAGATCT-ACAA-GATCCGTTAATAAATAGATAATAGATATTTA 281 ** **** ** ** *** * ** **** *** * * * * ** consensus_8045#0 TCCAGCTATACCATGACCA--TGAACGGGTGGCCATGGATTTCCGTGCAGTTCCAATATT 356 consensus_8045#1 CATAAGTGTATCATATACAACTAATTGATTGGACGTAGCTCATAAT-CAATTACAATAAG 340 * * ** *** ** * * * *** * * * * * ** ** ***** consensus_8045#0 CCAAATGATTTAGTACCACAAGGCTTTATCGGATAAACTGGAGGAAAAATCTGAAACAAA 416 consensus_8045#1 T-GATGAATTGGGTATGGTCA--CTTC--------------------------------- 364 * *** *** * *** consensus_8045#0 CTAGTGTATGAGCGTTCATAAAATCGATATCTTGGTACAAATACCTTGAATAATTTTTCA 476 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 ACTAAACGTTCCTCAGTTAGCCAAAACACAGAAAGCTCTAGAATACCAAGATTGAGTTTA 536 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 TCGTTGATTTCTGGTTCCTTAGAATTTTTCCAAAGCTCAAATAGCGAAACGAGATCCTGT 596 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 TCAGCTGATGCCAAGATGCCTTCCTGAATCAAACGCTCAGCGTATAATCGAGTTTCGATA 656 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 GCATGTGACCATGGTAATTCGACCCTCGTGCCAAATTTTTGG 698 consensus_8045#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||