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Schistosoma mansoni
cluster # 8046 cluster # 8046       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8046#0 length = 1425 sequences # 5  
consensus_8046#1 length = 672 sequences # 1  

consensusID : consensus_8046#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1425
fasta sequence
                              [CCTGAGTTGCCAATTCAAGAACAAAATCTACAGACTAAATTGCCAATCACCTCGTTTTCGTTTCCTGAAGCTAGTGATTAGGAATTCTTCAAATTTATTCTGATGCCTAGCAAATTTTCAGTCTTCACGTATGCCGCTAGGGGGTTGAGTTCTCATTGGAACCATGTTAAACTCGGACCTCCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATTAATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTCAAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGTGGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGAATAAAAAATCGCTGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTCGGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACTTGGGGCAACCATAAACCTATTTTCACACATAGTGGACTAAATGTACACCAATATCGTTATTACAATAGTAATACTTGTGGTCTCGATATAGATGGTTGTTTATCTGATTTATCAAAAATTCCCAAAGGACATTTCGTTTTACTTCATGCATGTGCGCATAATCCTACTGGAGTAGATCCATCATTTGATCAATGGAAAAAAATTGGAGAGATTTTGAAGTCACGTGATTTAATCCCATTTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAAAGTTTTGCTAAGAACATGGGATTATATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGATGAAGCTGAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCACCGATTCATGGCGCACGTATTGCAACGGAAATTGATGTCTAATCCTGATTTAACGTC-AAAGTGGCTCATTGATTTG-AAACTATGGCTGATCGTATTATTAC-ATGCGTCAAAGTTTAAGAAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGGAATGTTCTGCTATTCTGGGCTTAATCCATCACAGGTTGAAAAGCTGACTAGTGAATATTCTATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGACTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGTGTTTCTTTTTTTATTATCTGTTTGTTAATTTATACCCAATATATATACAAATATATTATTTA]

[+] EMBL CD162379             [CCTGAGTTGCCAATTCAAGAACAAAATCTACAGACTAAATTGCCAATCACCTCGTTTTCGTTTCCTGAAGCTAGTGATTAGGAATTCTTCAAATTTATTCTGATGCCTAGCAAATTTTCAGTCTTCACGTATGCCGCTAGGGGGTTGAGTTCTCATTGGAACCATGTTAAACTCGGACCTCCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATTAATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTCAAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGTGGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGAATAAAAAATCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD094952             [                     CAAAATCTACAGACTAAATTGCCAATCACCTCGTTTTCGTTTCCTGAAGCTAGTGATTAGGAATTCTTCAAATTTATTCTGATGCCTAGCAAATTTTCAGTCTTCACGTATGCCGCTAGGGGGTTGAGTTCTCATTGGAACCATGTTAAACTCGGACCTCCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATTAATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTCAAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGTGGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGAATAAAAAATCGCTGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTCGGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACTTGGGGCAACCATAAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD155496             [                                                                                                                                                                  CATGTTAAACTCGGACCTCCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATTAATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTCAAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGTGGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGAATAAAAAATCGCTGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTCGGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACTTGGGGCAACCATAAACCTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD080129             [                                                                                                                                                                                                                                                                                                                                                                                                                                                TGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTCGGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACTTGGGGCAACCATAAACCTATTTTCACACATAGTGGACTAAATGTACACCAATATCGTTATTACAATAGTAATACTTGTGGTCTCGATATAGATGGTTGTTTATCTGATTTATCAAAAATTCCCAAAGGACATTTCGTTTTACTTCATGCATGTGCGCATAATCCTACTGGAGTAGATCCATCATTTGATCAATGGAAAAAAATTGGAGAGATTTTGAAGTCACGTGATTTAATCCCATTTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAAAGTTTTGCTAAGAACATGGGATTATATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGATGAAGCTGAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCACCGATTCATGGCGCACGTATTGCAACGGAAATTGATGTCTAATCCTGATTTAACGTC AAAGTGGCTCATTGATTTG AAACTATGGCTGATCGTATTATTAC ATGCGT                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD074822             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGA TTTGAAGTCACGTGATTTAATCCCATTTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAAAGTTTTGCTAAGAACATGGGATTATATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGATGAAGCTAAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCACCGATTCATGGCGCACGTATTGCAACGG AATTGATGTCTAATCCTGATTT ACGTCAAAAGTGGCTCATTGATTTGAAAACTATGGCTGATCGTATTATTACAATGCGTCAAAGTTTAAGAAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGGAATGTTCTGCTATTCTGGGCTTAATCCATCACAGGTTGAAAAGCTGACTAGTGAATATTCTATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGACTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGTGTTTCTTTTTTTATTATCTGTTTGTTAATTTATACCCAATATATATACAAATATATTATTTA]


>consensus_8046#0 CCTGAGTTGCCAATTCAAGAACAAAATCTACAGACTAAATTGCCAATCACCTCGTTTTCG TTTCCTGAAGCTAGTGATTAGGAATTCTTCAAATTTATTCTGATGCCTAGCAAATTTTCA GTCTTCACGTATGCCGCTAGGGGGTTGAGTTCTCATTGGAACCATGTTAAACTCGGACCT CCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATT AATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTC AAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGT GGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGA ATAAAAAATCGCTGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTC GGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACT TGGGGCAACCATAAACCTATTTTCACACATAGTGGACTAAATGTACACCAATATCGTTAT TACAATAGTAATACTTGTGGTCTCGATATAGATGGTTGTTTATCTGATTTATCAAAAATT CCCAAAGGACATTTCGTTTTACTTCATGCATGTGCGCATAATCCTACTGGAGTAGATCCA TCATTTGATCAATGGAAAAAAATTGGAGAGATTTTGAAGTCACGTGATTTAATCCCATTT TTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATA CGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAAAGTTTTGCTAAG AACATGGGATTATATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGAT GAAGCTGAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCA CCGATTCATGGCGCACGTATTGCAACGGAAATTGATGTCTAATCCTGATTTAACGTCAAA GTGGCTCATTGATTTGAAACTATGGCTGATCGTATTATTACATGCGTCAAAGTTTAAGAA ATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGGAA TGTTCTGCTATTCTGGGCTTAATCCATCACAGGTTGAAAAGCTGACTAGTGAATATTCTA TTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGACT ACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGTGTTTCTTTTTTTATTAT CTGTTTGTTAATTTATACCCAATATATATACAAATATATTATTTA



consensusID : consensus_8046#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence
                              [TGCGCATAATCCCACTGGAGTAGATCCATCATTTGATCAATGGACGTGATTTAATCCCATTTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAANNNNNNNNNNNNNNNNNNNNNNNNATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGATGAAGCTAAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCACCGATTCATGGCGCACGTATTGCAANNNNNNNNNNNNNNNNNNNNNATTTACGTCAAAAGTGGCTCATTGATTTGAAAACTATGGCTGATCGTATTATTACAATGCGTCAAAGTTTAAGAAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGGAATGTTCTGCTATTCTGGGCTTAATCCATCNNNNGTTGAAAAGCTGACTAGTGAATATTCTATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGACTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGGGTTTCTTTNTTTATTATCTGGTTGGTT]

[+] EMBL CD080996             [TGCGCATAATCCCACTGGAGTAGATCCATCATTTGATCAATGGACGTGATTTAATCCCATTTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAANNNNNNNNNNNNNNNNNNNNNNNNATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGATGAAGCTAAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCACCGATTCATGGCGCACGTATTGCAANNNNNNNNNNNNNNNNNNNNNATTTACGTCAAAAGTGGCTCATTGATTTGAAAACTATGGCTGATCGTATTATTACAATGCGTCAAAGTTTAAGAAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGGAATGTTCTGCTATTCTGGGCTTAATCCATCNNNNGTTGAAAAGCTGACTAGTGAATATTCTATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGACTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGGGTTTCTTTNTTTATTATCTGGTTGGTT]


>consensus_8046#1 TGCGCATAATCCCACTGGAGTAGATCCATCATTTGATCAATGGACGTGATTTAATCCCAT TTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAA TACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAANNNNNNNNNN NNNNNNNNNNNNNNATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGA TGAAGCTAAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCC ACCGATTCATGGCGCACGTATTGCAANNNNNNNNNNNNNNNNNNNNNATTTACGTCAAAA GTGGCTCATTGATTTGAAAACTATGGCTGATCGTATTATTACAATGCGTCAAAGTTTAAG AAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGG AATGTTCTGCTATTCTGGGCTTAATCCATCNNNNGTTGAAAAGCTGACTAGTGAATATTC TATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGA CTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGGGTTTCTTTNTTTATT ATCTGGTTGGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8046#0      CCTGAGTTGCCAATTCAAGAACAAAATCTACAGACTAAATTGCCAATCACCTCGTTTTCG 60
consensus_8046#1      ------------------------------------------------------------
                                                                                  

consensus_8046#0      TTTCCTGAAGCTAGTGATTAGGAATTCTTCAAATTTATTCTGATGCCTAGCAAATTTTCA 120
consensus_8046#1      ------------------------------------------------------------
                                                                                  

consensus_8046#0      GTCTTCACGTATGCCGCTAGGGGGTTGAGTTCTCATTGGAACCATGTTAAACTCGGACCT 180
consensus_8046#1      ------------------------------------------------------------
                                                                                  

consensus_8046#0      CCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATT 240
consensus_8046#1      ------------------------------------------------------------
                                                                                  

consensus_8046#0      AATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTC 300
consensus_8046#1      ------------------------------------------------------------
                                                                                  

consensus_8046#0      AAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGT 360
consensus_8046#1      ------------------------------------------------------------
                                                                                  

consensus_8046#0      GGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGA 420
consensus_8046#1      ------------------------------------------------------------
                                                                                  

consensus_8046#0      ATAAAAAATCGCTGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTC 480
consensus_8046#1      ------------------------------------------------------------
                                                                                  

consensus_8046#0      GGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACT 540
consensus_8046#1      ------------------------------------------------------------
                                                                                  

consensus_8046#0      TGGGGCAACCATAAACCTATTTTCACACATAGTGGACTAAATGTACACCAATATCGTTAT 600
consensus_8046#1      ------------------------------------------------------------
                                                                                  

consensus_8046#0      TACAATAGTAATACTTGTGGTCTCGATATAGATGGTTGTTTATCTGATTTATCAAAAATT 660
consensus_8046#1      ------------------------------------------------------------
                                                                                  

consensus_8046#0      CCCAAAGGACATTTCGTTTTACTTCATGCATGTGCGCATAATCCTACTGGAGTAGATCCA 720
consensus_8046#1      --------------------------------TGCGCATAATCCCACTGGAGTAGATCCA 28
                                                      ************ ***************

consensus_8046#0      TCATTTGATCAATGGAAAAAAATTGGAGAGATTTTGAAGTCACGTGATTTAATCCCATTT 780
consensus_8046#1      TCATTTGATCAATGGA--------------------------CGTGATTTAATCCCATTT 62
                      ****************                          ******************

consensus_8046#0      TTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATA 840
consensus_8046#1      TTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATA 122
                      ************************************************************

consensus_8046#0      CGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAAAGTTTTGCTAAG 900
consensus_8046#1      CGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAANNNNNNNNNNNN 182
                      ************************************************            

consensus_8046#0      AACATGGGATTATATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGAT 960
consensus_8046#1      NNNNNNNNNNNN-ATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGAT 241
                                   ***********************************************

consensus_8046#0      GAAGCTGAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCA 1020
consensus_8046#1      GAAGCTAAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCA 301
                      ****** *****************************************************

consensus_8046#0      CCGATTCATGGCGCACGTATTGCAACGGAAATTGATGTCTAATCCTGATTTAACGTCAAA 1080
consensus_8046#1      CCGATTCATGGCGCACGTATTGCAANNNNNNNNNNNNNNNNNNNNN-ATTTACGTCAAAA 360
                      *************************                      *****     ***

consensus_8046#0      GTGGCTCATTGATTTGAAA-CTATGGCTGATCGTATTATTACA-TGCGTCAAAGTTTAAG 1138
consensus_8046#1      GTGGCTCATTGATTTGAAAACTATGGCTGATCGTATTATTACAATGCGTCAAAGTTTAAG 420
                      ******************* *********************** ****************

consensus_8046#0      AAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGG 1198
consensus_8046#1      AAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGG 480
                      ************************************************************

consensus_8046#0      AATGTTCTGCTATTCTGGGCTTAATCCATCACAGGTTGAAAAGCTGACTAGTGAATATTC 1258
consensus_8046#1      AATGTTCTGCTATTCTGGGCTTAATCCATCNNNNGTTGAAAAGCTGACTAGTGAATATTC 540
                      ******************************    **************************

consensus_8046#0      TATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGA 1318
consensus_8046#1      TATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGA 600
                      ************************************************************

consensus_8046#0      CTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGTGTTTCTTTTTTTATT 1378
consensus_8046#1      CTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGGGTTTCTTTNTTTATT 660
                      ******************************************** ******** ******

consensus_8046#0      ATCTGTTTGTTAATTTATACCCAATATATATACAAATATATTATTTA 1425
consensus_8046#1      ATCTGGTTGGTT----------------------------------- 672
                      ***** *** *                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)