These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8046#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1425 fasta sequence [CCTGAGTTGCCAATTCAAGAACAAAATCTACAGACTAAATTGCCAATCACCTCGTTTTCGTTTCCTGAAGCTAGTGATTAGGAATTCTTCAAATTTATTCTGATGCCTAGCAAATTTTCAGTCTTCACGTATGCCGCTAGGGGGTTGAGTTCTCATTGGAACCATGTTAAACTCGGACCTCCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATTAATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTCAAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGTGGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGAATAAAAAATCGCTGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTCGGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACTTGGGGCAACCATAAACCTATTTTCACACATAGTGGACTAAATGTACACCAATATCGTTATTACAATAGTAATACTTGTGGTCTCGATATAGATGGTTGTTTATCTGATTTATCAAAAATTCCCAAAGGACATTTCGTTTTACTTCATGCATGTGCGCATAATCCTACTGGAGTAGATCCATCATTTGATCAATGGAAAAAAATTGGAGAGATTTTGAAGTCACGTGATTTAATCCCATTTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAAAGTTTTGCTAAGAACATGGGATTATATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGATGAAGCTGAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCACCGATTCATGGCGCACGTATTGCAACGGAAATTGATGTCTAATCCTGATTTAACGTC-AAAGTGGCTCATTGATTTG-AAACTATGGCTGATCGTATTATTAC-ATGCGTCAAAGTTTAAGAAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGGAATGTTCTGCTATTCTGGGCTTAATCCATCACAGGTTGAAAAGCTGACTAGTGAATATTCTATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGACTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGTGTTTCTTTTTTTATTATCTGTTTGTTAATTTATACCCAATATATATACAAATATATTATTTA] [+] EMBL CD162379 [CCTGAGTTGCCAATTCAAGAACAAAATCTACAGACTAAATTGCCAATCACCTCGTTTTCGTTTCCTGAAGCTAGTGATTAGGAATTCTTCAAATTTATTCTGATGCCTAGCAAATTTTCAGTCTTCACGTATGCCGCTAGGGGGTTGAGTTCTCATTGGAACCATGTTAAACTCGGACCTCCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATTAATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTCAAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGTGGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGAATAAAAAATCGC ] [-] EMBL CD094952 [ CAAAATCTACAGACTAAATTGCCAATCACCTCGTTTTCGTTTCCTGAAGCTAGTGATTAGGAATTCTTCAAATTTATTCTGATGCCTAGCAAATTTTCAGTCTTCACGTATGCCGCTAGGGGGTTGAGTTCTCATTGGAACCATGTTAAACTCGGACCTCCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATTAATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTCAAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGTGGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGAATAAAAAATCGCTGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTCGGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACTTGGGGCAACCATAAAC ] [+] EMBL CD155496 [ CATGTTAAACTCGGACCTCCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATTAATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTCAAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGTGGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGAATAAAAAATCGCTGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTCGGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACTTGGGGCAACCATAAACCTAT ] [+] EMBL CD080129 [ TGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTCGGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACTTGGGGCAACCATAAACCTATTTTCACACATAGTGGACTAAATGTACACCAATATCGTTATTACAATAGTAATACTTGTGGTCTCGATATAGATGGTTGTTTATCTGATTTATCAAAAATTCCCAAAGGACATTTCGTTTTACTTCATGCATGTGCGCATAATCCTACTGGAGTAGATCCATCATTTGATCAATGGAAAAAAATTGGAGAGATTTTGAAGTCACGTGATTTAATCCCATTTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAAAGTTTTGCTAAGAACATGGGATTATATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGATGAAGCTGAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCACCGATTCATGGCGCACGTATTGCAACGGAAATTGATGTCTAATCCTGATTTAACGTC AAAGTGGCTCATTGATTTG AAACTATGGCTGATCGTATTATTAC ATGCGT ] [-] EMBL CD074822 [ AGA TTTGAAGTCACGTGATTTAATCCCATTTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAAAGTTTTGCTAAGAACATGGGATTATATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGATGAAGCTAAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCACCGATTCATGGCGCACGTATTGCAACGG AATTGATGTCTAATCCTGATTT ACGTCAAAAGTGGCTCATTGATTTGAAAACTATGGCTGATCGTATTATTACAATGCGTCAAAGTTTAAGAAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGGAATGTTCTGCTATTCTGGGCTTAATCCATCACAGGTTGAAAAGCTGACTAGTGAATATTCTATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGACTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGTGTTTCTTTTTTTATTATCTGTTTGTTAATTTATACCCAATATATATACAAATATATTATTTA] consensusID : consensus_8046#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [TGCGCATAATCCCACTGGAGTAGATCCATCATTTGATCAATGGACGTGATTTAATCCCATTTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAANNNNNNNNNNNNNNNNNNNNNNNNATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGATGAAGCTAAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCACCGATTCATGGCGCACGTATTGCAANNNNNNNNNNNNNNNNNNNNNATTTACGTCAAAAGTGGCTCATTGATTTGAAAACTATGGCTGATCGTATTATTACAATGCGTCAAAGTTTAAGAAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGGAATGTTCTGCTATTCTGGGCTTAATCCATCNNNNGTTGAAAAGCTGACTAGTGAATATTCTATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGACTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGGGTTTCTTTNTTTATTATCTGGTTGGTT] [+] EMBL CD080996 [TGCGCATAATCCCACTGGAGTAGATCCATCATTTGATCAATGGACGTGATTTAATCCCATTTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAANNNNNNNNNNNNNNNNNNNNNNNNATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGATGAAGCTAAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCACCGATTCATGGCGCACGTATTGCAANNNNNNNNNNNNNNNNNNNNNATTTACGTCAAAAGTGGCTCATTGATTTGAAAACTATGGCTGATCGTATTATTACAATGCGTCAAAGTTTAAGAAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGGAATGTTCTGCTATTCTGGGCTTAATCCATCNNNNGTTGAAAAGCTGACTAGTGAATATTCTATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGACTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGGGTTTCTTTNTTTATTATCTGGTTGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8046#0 CCTGAGTTGCCAATTCAAGAACAAAATCTACAGACTAAATTGCCAATCACCTCGTTTTCG 60 consensus_8046#1 ------------------------------------------------------------ consensus_8046#0 TTTCCTGAAGCTAGTGATTAGGAATTCTTCAAATTTATTCTGATGCCTAGCAAATTTTCA 120 consensus_8046#1 ------------------------------------------------------------ consensus_8046#0 GTCTTCACGTATGCCGCTAGGGGGTTGAGTTCTCATTGGAACCATGTTAAACTCGGACCT 180 consensus_8046#1 ------------------------------------------------------------ consensus_8046#0 CCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATT 240 consensus_8046#1 ------------------------------------------------------------ consensus_8046#0 AATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTC 300 consensus_8046#1 ------------------------------------------------------------ consensus_8046#0 AAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGT 360 consensus_8046#1 ------------------------------------------------------------ consensus_8046#0 GGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGA 420 consensus_8046#1 ------------------------------------------------------------ consensus_8046#0 ATAAAAAATCGCTGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTC 480 consensus_8046#1 ------------------------------------------------------------ consensus_8046#0 GGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACT 540 consensus_8046#1 ------------------------------------------------------------ consensus_8046#0 TGGGGCAACCATAAACCTATTTTCACACATAGTGGACTAAATGTACACCAATATCGTTAT 600 consensus_8046#1 ------------------------------------------------------------ consensus_8046#0 TACAATAGTAATACTTGTGGTCTCGATATAGATGGTTGTTTATCTGATTTATCAAAAATT 660 consensus_8046#1 ------------------------------------------------------------ consensus_8046#0 CCCAAAGGACATTTCGTTTTACTTCATGCATGTGCGCATAATCCTACTGGAGTAGATCCA 720 consensus_8046#1 --------------------------------TGCGCATAATCCCACTGGAGTAGATCCA 28 ************ *************** consensus_8046#0 TCATTTGATCAATGGAAAAAAATTGGAGAGATTTTGAAGTCACGTGATTTAATCCCATTT 780 consensus_8046#1 TCATTTGATCAATGGA--------------------------CGTGATTTAATCCCATTT 62 **************** ****************** consensus_8046#0 TTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATA 840 consensus_8046#1 TTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATA 122 ************************************************************ consensus_8046#0 CGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAAAGTTTTGCTAAG 900 consensus_8046#1 CGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAANNNNNNNNNNNN 182 ************************************************ consensus_8046#0 AACATGGGATTATATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGAT 960 consensus_8046#1 NNNNNNNNNNNN-ATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGAT 241 *********************************************** consensus_8046#0 GAAGCTGAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCA 1020 consensus_8046#1 GAAGCTAAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCA 301 ****** ***************************************************** consensus_8046#0 CCGATTCATGGCGCACGTATTGCAACGGAAATTGATGTCTAATCCTGATTTAACGTCAAA 1080 consensus_8046#1 CCGATTCATGGCGCACGTATTGCAANNNNNNNNNNNNNNNNNNNNN-ATTTACGTCAAAA 360 ************************* ***** *** consensus_8046#0 GTGGCTCATTGATTTGAAA-CTATGGCTGATCGTATTATTACA-TGCGTCAAAGTTTAAG 1138 consensus_8046#1 GTGGCTCATTGATTTGAAAACTATGGCTGATCGTATTATTACAATGCGTCAAAGTTTAAG 420 ******************* *********************** **************** consensus_8046#0 AAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGG 1198 consensus_8046#1 AAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGG 480 ************************************************************ consensus_8046#0 AATGTTCTGCTATTCTGGGCTTAATCCATCACAGGTTGAAAAGCTGACTAGTGAATATTC 1258 consensus_8046#1 AATGTTCTGCTATTCTGGGCTTAATCCATCNNNNGTTGAAAAGCTGACTAGTGAATATTC 540 ****************************** ************************** consensus_8046#0 TATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGA 1318 consensus_8046#1 TATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGA 600 ************************************************************ consensus_8046#0 CTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGTGTTTCTTTTTTTATT 1378 consensus_8046#1 CTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGGGTTTCTTTNTTTATT 660 ******************************************** ******** ****** consensus_8046#0 ATCTGTTTGTTAATTTATACCCAATATATATACAAATATATTATTTA 1425 consensus_8046#1 ATCTGGTTGGTT----------------------------------- 672 ***** *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||