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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1633 fasta sequence
[TATAATATATTAATAACCTAGTCAGTTACCGAATTGGCAAGTGATTAGTCAGAGAAATTAAATCATTACACATATTACACCAACCATATACACAGATTTCTGACAGAAAAGCAAAACCCGACAGGCATTGTTGAAAAACTTGCAAAGAGTGAGAAGGTAGACAGGTCTATAAACAAAGAAAATTTAATCTCCAAGAAAAAAATAATTGCCACTTCTTTTCTGTTCAACATCTTTGACCGAATTTAATTTGTTGATTCTTGGTCTAGCATTGGTTGGATCACGTCGAAATGTTATATCAAGTGATTGTAAAAATTTATTCATGCCAGTAACTAAATTTTGTGGTGTTGTTGCTGTAGCTTTAACACCAGGCTGACCGTCAAATACAACAACTCGATCGGCTAAATATGTTGCCATAATAAAATCATGTTCTACGATAAAAGCTGTCTTTTTAGCATGCAGTATAAATCGTTTAATAACTTTTGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGACATCAGCTGGTTGGCCAAGGCACAATGTAATAGCCAATCGTTGTAATTCACCACCAGATAAGTTCATTACTTGCTGATCATAGAGTCGTTCCATTTGTAATGGTTTAAGCACATCTGTTGAAAATTGTGGATGTGTAAACGAATCACGAATTTTCTCCAAAAGTAGATTTTGAACGGTTTTCTCTGATTTTGGACTAATCTTTTGTGGTTTATATGATACATGTAAAACTGGACACTTTTGATCACCATCAGGTTTCAGATTGCCAGCCAGCATACGAATAAAAGTAGTTTTACCAGTACCATTCTCACCTAGCATTACAATAATTTCAGAATCAGTAAACGATCCAGCCTCCACTGTCAAATCGAATGAACCCAAATTTTTATACATAGTTGGATAATCGTAACGAGCTGTACGTTTTAATTCTTCTTCGTTACCGGTTTCGGACACCTTGAAAACCAGTGGTGTTTCTCGAAAACGCAAATTTTCCGTAGGGACCACACCATCCAAAAATATATTTATTCCTTCGCGGACGGAAAAAGGCATGGTGACTACCCCATAAGCACCTGGGACACCATAAAGACAGCATATGAAGTCAGACAAGTAATCCAAAACAGATAAATCATGCTCCACAACAATAACATAATTTGTACCCTCCAGTAGTTCACGTATAGCTATAGCTGTTTTTAAACGCTGCTTGACATCCAGGTAAGAACTAGGCTCATCAAACATGTATATATCAGCTTTTTGAACACAAACCATTGCACAAGCAAATCTTTGAAGTTCACCACCAGATAAATCGCCTACCATACGTTCAGTGACTACTTGAAGGTCAAGCATTTCCAAAACGTGATCTTGGTTGCCTCTATCATCCTTTCGATTAAGTAAGGTTTTAACCTCACCAGATACGATTTTAGGGATTTGATCAACATATTGTGGCTTAATAACAGCTCTCAAATTGTCCTCTAAGATTTTCGTGAAATAATTCTGTAGTTCTGAACCACGGAAATATGTTAATATTTCAGTCCAATCCGGTGGATTCTTGAACCGGCCAAGATTGGGTTTAAGTTTTCCGGCAAGTTCTTTAAGGCACTGG]
[+] EMBL AI975226 [TATAATATATTAATAACCTAGTCAGTTACCGAATTGGCAAGTGATTAGTCAGAGAAATTAAATCATTACACATATTACACCAACCATATACACAGATTTCTGACAGAAAAGCAAAACCCGACAGGCATTGTTGAAAAACTTGCAAAGAGTGAGAAGGTAGACAGGTCTATAAACAAAGAAAATTTAATCTCCAAGAAAAAAATAATTGCCACTTCTTTTCTGTTCAACATCTTTGACCGAATTTAATTTGTTGATTCTTGGTCTAGCATTGGTTGGATCACGTCGAAATGTTATATCAAGTGATTGTAAAAATTTATTCATGCCAGTAACTAAATTTTGTGGTGTTGTTGCTGTAGCTTTAACACCAGGCTGACCGTCAAATACAACAACTCGATCGGCTAAATATGTTGCCATAATAAAATCATGTTCTACGATAAAAGCTGTCTTTTTAGCATGCAGTATAAATCGTTTAATAACTTTGGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGACATCAGC ]
[-] EMBL CD152578 [ AACAACTCGATCGGCTAAATATGTTGCCATAATAAAATCATGTTCTACGATAAAAGCTGTCTTTTTAGCATGCAGTATAATTCGTTTAATAACTTTTGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGACATCAGCTGGTTGGCCAAGGCACAATGTAATAGCCAATCGTTGTAATTCACCACCAGATAAGTTCATTACTTGCTGATCATAGAGTCGTTCCATTTGTAATGGTTTAAGCACATCTGTTGAAAATTGTGGATGTGTAAACGAATCACGAATTTTCTCCAAAAGTAGATTTTGAACGG ]
[+] EMBL CD129094 [ CTTTTTAGCATGCAGTATAAATCGTTTAATAACTTTTGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGACATCAGCTGGTTGGCCAAGGCACAATGTAATAGCCAATCGTTGTAATTCACCACCAGATAAGTTCATTACTTGCTGATCATAGAGTCGTTCCATTTGTAATGGTTTAAGCACATCTGTTGAAAATTGTGGATGTGTAAACGAATCACGAATTTTCTCCAAAAGTAGATTTTGAACGGTTTTCTCTGATTTTGGACTAATCTTTTGTGGTTTATATGATACATGTAAAACTGGACACTTTTGATCACCATCAGGTTTCAGATTGCCAGCCAGCATACGAATAAAAGTAGTTTTACCAGTACCATTCTCACCTAGCATTACAATAATTTCAGAATCAGTAAACGATCCAGCCTCCACTGTCAAATCGAATGAACCCAAATTTTTATACATAGTTGGATAATCGTAACGAGCTGTACGTTTTAATTCTTCTTCGTTACCGGTTTCGGACACCTTGAAAACCAGTGGTGTTTCTCGAAAACGCAAATTTTCCGTAGGGACCACACCATCCAAAAATATATTTATTCCTTCGCGGACGGAAAAAGGCATGGTG ]
[-] EMBL CD113035 [ ATAAAAGTAGTTTTACCAGTACCATTCTCACNTAGCATTACAATAATTTCAGAATCAGTAAACGATCCAGCCTCCACTGTCAAATCGAATGAACCCAAATTTTTATACATAGTTGGATAATCGTAACGAGCTGTACGTTTTAATTCTTCTTCGTTACCGGTTTCGGACACCTTGAAAACCAGTGGTGTTTCTCGAAAACGCAAATTTTCCGTAGGGACCACACCATCCAAAAATATATTTATTCCTTCGCGGACGGAAAAAGGCATGGTGACTACCCCATAAGCACCTGGGACACCATAAAGACAGCATATGAAGTCAGACAAGTAATCCAAAACAGATAAATCATGCTCCACAACAATAACATAATTTGTACCCTCCAGTAGTTCACGTATAGCTATAGCTGTTTTTAAACGCTGCTTGACATCCAGGTAAGAACTAGGCTCATCAAACATGTATATATCAGCTTTTTGAACACAAACCAT ]
[-] EMBL CD162314 [ AGGCATGGTGACTACCCCATAAGCACCTGGGACACCATAAAGACAGCATATGAAGTCAGACAAGTAATCCAAAACAGATAAATCATGCTCCACAACAATAACATAATTTGTACCCTCCAGTAGTTCACGTATAGCTATAGCTGTTTTTAAACGCTGCTTGACATCCAGGTAAGAACTAGGCTCATCAAACATGTATATATCAGCTTTTTGAACACAAACCATTGCACAAGCAAATCTTTGAAGTTCACCACCAGATAAATCGCCTACCATACGTTCAGTGACTACTTGAAGGTCAAGCATTTCCAAAACGTGATCTTGGTTGCCTCTATCATCCTTTCGATTAAGTAAGGTTTTAACCTCACCAGATACGATTTTAGGGATTTGATCAACATATTGTGGCTTAATAACAGCTCTCAAATTGTCCTCTAAGATTTTCGTGAAATAATTCTGTAGTTCTGAACCACGGAAATATGTTAATATTTCAGTCCAATCCGGTGGATTCTTGAACCGGCCAAGATTGGGTTTAAGTTTTCCGGCAAGTTCTTTAAGGCACTGG]
consensusID : consensus_8048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence
[CTATAAACAAAGAAGATTTAATCTCCAACAAAAAAATAATTGCCAGTAACTAAACTGTGTGGTGATGTAGCTGTAGCTCTGACACCAGGCTGCCCGTCAAATACAACACCTCGATCGGTTAAATATGATGCCATAATAAAATCATGTTCTCCGATAAAAGCTGTCTCTTTAGCATGCAGTATAAATCGTTTAATAACTTTCGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGACATCAGCTGGTTGGCCAAGGCACAATGTAATAGCCAATCGTTGTAATT]
[-] EMBL CD178932 [CTATAAACAAAGAAGATTTAATCTCCAACAAAAAAATAATTGCCAGTAACTAAACTGTGTGGTGATGTAGCTGTAGCTCTGACACCAGGCTGCCCGTCAAATACAACACCTCGATCGGTTAAATATGATGCCATAATAAAATCATGTTCTCCGATAAAAGCTGTCTCTTTAGCATGCAGTATAAATCGTTTAATAACTTTCGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGACATCAGCTGGTTGGCCAAGGCACAATGTAATAGCCAATCGTTGTAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8048#0 TATAATATATTAATAACCTAGTCAGTTACCGAATTGGCAAGTGATTAGTCAGAGAAATTA 60
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 AATCATTACACATATTACACCAACCATATACACAGATTTCTGACAGAAAAGCAAAACCCG 120
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 ACAGGCATTGTTGAAAAACTTGCAAAGAGTGAGAAGGTAGACAGGTCTATAAACAAAGAA 180
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 AATTTAATCTCCAAGAAAAAAATAATTGCCACTTCTTTTCTGTTCAACATCTTTGACCGA 240
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 ATTTAATTTGTTGATTCTTGGTCTAGCATTGGTTGGATCACGTCGAAATGTTATATCAAG 300
consensus_8048#1 -------------------------------------CTATAAACAAAGAAGAT-TTAAT 22
* *** ** * **
consensus_8048#0 TGATTGTAAAAATTTATTCATGCCAGTAACTAAATTTTGTGGTGTTGTTGCTGTAGCTTT 360
consensus_8048#1 CTCCAACAAAAAAATAAT--TGCCAGTAACTAAACTGTGTGGTGATGTAGCTGTAGCTCT 80
***** ** * ************** * ******* *** ********* *
consensus_8048#0 AACACCAGGCTGACCGTCAAATACAACAACTCGATCGGCTAAATATGTTGCCATAATAAA 420
consensus_8048#1 GACACCAGGCTGCCCGTCAAATACAACACCTCGATCGGTTAAATATGATGCCATAATAAA 140
*********** *************** ********* ******** ************
consensus_8048#0 ATCATGTTCTACGATAAAAGCTGTCTTTTTAGCATGCAGTATAAATCGTTTAATAACTTT 480
consensus_8048#1 ATCATGTTCTCCGATAAAAGCTGTCTCTTTAGCATGCAGTATAAATCGTTTAATAACTTT 200
********** *************** *********************************
consensus_8048#0 TGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGAC 540
consensus_8048#1 CGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGAC 260
***********************************************************
consensus_8048#0 ATCAGCTGGTTGGCCAAGGCACAATGTAATAGCCAATCGTTGTAATTCACCACCAGATAA 600
consensus_8048#1 ATCAGCTGGTTGGCCAAGGCACAATGTAATAGCCAATCGTTGTAATT------------- 307
***********************************************
consensus_8048#0 GTTCATTACTTGCTGATCATAGAGTCGTTCCATTTGTAATGGTTTAAGCACATCTGTTGA 660
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 AAATTGTGGATGTGTAAACGAATCACGAATTTTCTCCAAAAGTAGATTTTGAACGGTTTT 720
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 CTCTGATTTTGGACTAATCTTTTGTGGTTTATATGATACATGTAAAACTGGACACTTTTG 780
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 ATCACCATCAGGTTTCAGATTGCCAGCCAGCATACGAATAAAAGTAGTTTTACCAGTACC 840
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 ATTCTCACCTAGCATTACAATAATTTCAGAATCAGTAAACGATCCAGCCTCCACTGTCAA 900
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 ATCGAATGAACCCAAATTTTTATACATAGTTGGATAATCGTAACGAGCTGTACGTTTTAA 960
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 TTCTTCTTCGTTACCGGTTTCGGACACCTTGAAAACCAGTGGTGTTTCTCGAAAACGCAA 1020
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 ATTTTCCGTAGGGACCACACCATCCAAAAATATATTTATTCCTTCGCGGACGGAAAAAGG 1080
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 CATGGTGACTACCCCATAAGCACCTGGGACACCATAAAGACAGCATATGAAGTCAGACAA 1140
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 GTAATCCAAAACAGATAAATCATGCTCCACAACAATAACATAATTTGTACCCTCCAGTAG 1200
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 TTCACGTATAGCTATAGCTGTTTTTAAACGCTGCTTGACATCCAGGTAAGAACTAGGCTC 1260
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 ATCAAACATGTATATATCAGCTTTTTGAACACAAACCATTGCACAAGCAAATCTTTGAAG 1320
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 TTCACCACCAGATAAATCGCCTACCATACGTTCAGTGACTACTTGAAGGTCAAGCATTTC 1380
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 CAAAACGTGATCTTGGTTGCCTCTATCATCCTTTCGATTAAGTAAGGTTTTAACCTCACC 1440
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 AGATACGATTTTAGGGATTTGATCAACATATTGTGGCTTAATAACAGCTCTCAAATTGTC 1500
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 CTCTAAGATTTTCGTGAAATAATTCTGTAGTTCTGAACCACGGAAATATGTTAATATTTC 1560
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 AGTCCAATCCGGTGGATTCTTGAACCGGCCAAGATTGGGTTTAAGTTTTCCGGCAAGTTC 1620
consensus_8048#1 ------------------------------------------------------------
consensus_8048#0 TTTAAGGCACTGG 1633
consensus_8048#1 -------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||