These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 798 fasta sequence [AAGCGTATGCGCGATTCACAGTTCGCGTTACGAACTGTTATACGGATTTTAACTTGGTTATATAAATGCCAAATGTTGGTGGTAATGAAAATGTACTCCGTGTGCTAGTGTCTACAGATAATCATGTAGGATATGCCGAAAAAGATGGTTTAAGGGGTCAAGACTCTTTTCGAACATTTGAGGAGATTCTACGTCTGGCAGTTTCACACAATGTGGATTTTATCTTATTTGCAGGCGACATTTTTCATGAAAGTCGACCTTCTATGAGGTCTTTACATGAAGTAATGCGTTTACTTCGTATATATTGTTTGGGAAGTAAACCAGTTCAATTTGAACTTCTTAGTGAAGCCAAGACTATATTTGCTAATACAGCGTTTCATACTGCAAATTATTTAGATGGTAATCTAAATGTTGGAATTCCCGTGTTTACCATTCATGGAAATCACGATGATCCTTCAGGTCCTGGTGGCTTATGTGCAGCTGATTTACTGCATACCGCTGGTTTGATAAATCTGTTTGGGAAGTTCTCTTCAGTAGAACGGATCGATTTGACCCCCGTTCTGCTACGCAAGGGAAATACTCGTGTGGCCTTATATGGCCTTGGATCTGTTCGAGAAGAGAGGCTTCATCGTTTGTTTTTAAATAATAGTGTCACTTTTTACCGTCCTACTGAGTGTGTAGATGACTGGTTTTCAGTTTGCACAGTTCACCAAAATCGTGTTCATCACGGCCCTACAAGTTATTTGCCTGAAAACTTCCTCCCAGATTTTCTTGACCTCATTA-TTTGNGGCCATGAAC] [+] EMBL CD162737 [AAGCGTATGCGCGATTCACAGTTCGCGTTACGAACTGTTATACGGATTTTAACTTGGTTATATAAATGCCAAATGTTGGTGGTAATGAAAATGTACTCCGTGTGCTAGTGTCTACAGATAATCATGTAGGATATGCCGAAAAAGATGGTTTAAGGGGTCAAGACTCTTTTCGAACATTTGAGGAGATTCTACGTCTGGCAGTTTCACACAATGTGGATTTTATCTTATTTGCAGGCGACATTTTTCATGAAAGTCGACCTTCTATGAGGTCTTTACATGAAGTAATGCGTTTACTTCGTATATATTGTTTGGGAAGTAAACCAGTTCAATTTGAACTTCTTAGTGAAGCCAAGACTATATTTGCTAATACAGCGTTTCATACTGCAAATTATTTAGATGGTAATCTAAATGTTGGAATTCCCGTGTTTACCATTCATGGAAATCACGATGAT ] [+] EMBL CD154360 [ TTTTTCATGAAAGTCGACCTTCTATGAGGTCTTTACATGAAGTAATGCGTTTACTTCGTATATATTGTTTGGGAAGTAAACCAGTTCAATTTGAACTTCTTAGTGAAGCCAAGACTATATTTGCTAATACAGCGTTTCATACTGCAAATTATTTAGATGGTAATCTAAATGTTGGAATTCCCGTGTTTACCATTCATGGAAATCACGATGATCCTTCAGGTCCTGGTGGCTTATGTGCAGCTGATTTACTGCATACCGCTGGTTTGATAAATCTGTTTGGGAAGTTCTCTTCAGTAGAACGGATCGATTTGACCCCCGTTCTGCTACGCAAGGGAAATACTCGTGTGGCCTTATATGGCCTTGGATCTGTTCGAGAAGAGAGGCTTCATCGTTTGTTTTTAAATAATAGTGTCACTTTTTACCGTCCTACTGAGTGTGTAGATGACTGGTTTTCAGTTTGCACAGTTCACCAAAATCGTGTTCATCACGGCCCTACAAGTTATTTGCCTGAAAACTTCCTCCCAGATTTTCTTGACCTCATTA TTTGNGGCC ] [+] EMBL CD115362 [ CCGTTCTGCTACGCAAGGGAAATACTCGTGTGGCCTTATATGGCCTTGGATCTGTTCGAGAAGAGAGGCTTCATCGTTTGTTTTTAAATAATAGTGTCACTTTTTACCGTCCTACTGAGTGTGTAGATGACTGGTTTTCAGTTTGCACAGTTCACCAAAATCGTGTTCATCACGGCCCTACAAGTTATTTGCCTGAAAACTTCCTCCCAGATTTTCTTGACCTCATTANTTTG GGCCATGAAC] consensusID : consensus_8049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [CAGAGTTAATTGTTGTGCACGAAAATACTCGAAGAATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCCTGCGTGGAGGCATATGATTTCTGTTAAAGTTAATTTCAAAAATAAATTNTAATTTGA] [+] EMBL AW017171 [CAGAGTTAATTGTTGTGCACGAAAATACTCGAAGAATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCCTGCGTGGAGGCATATGATTTCTGTTAAAGTTAATTTCAAAAATAAATTNTAATTTGA] consensusID : consensus_8049#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [GGCCGCCGCAGTAATTCTATTACATTGCCTCCTATGCTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACCAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGAAGCGAGAGGGACAGAGA] [+] EMBL CD184117 [GGCCGCCGCAGTAATTCTATTACATTGCCTCCTATGCTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACCAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGAAGCGAGAGGGACAGAGA] consensusID : consensus_8049#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [CTCTCGAATTGCTATTAATAATTATTCTTCTGGAATCGACTCAAATATCAAAAATCTCGTCATCTTCGTGATATCACTCGGATGCTTCCTATTTTTGCTTGGATTTTTCGGATTTTGTGGGCTATCTACCGAAAATACTTGTTGTCTAATCGTGTACACAGTTCTGCTTTCAGTTATGGTTGCAGCTGAAATAGCAGCAGGAATAGCGGCAGTTGCACTAAAGAAAGATGTGAAAACTCAATTCCTATCTTCGGTTAAGAGCTCCGTTTCTGAATATGACAATAATCCTGACT] [+] EMBL CD148755 [CTCTCGAATTGCTATTAATAATTATTCTTCTGGAATCGACTCAAATATCAAAAATCTCGTCATCTTCGTGATATCACTCGGATGCTTCCTATTTTTGCTTGGATTTTTCGGATTTTGTGGGCTATCTACCGAAAATACTTGTTGTCTAATCGTGTACACAGTTCTGCTTTCAGTTATGGTTGCAGCTGAAATAGCAGCAGGAATAGCGGCAGTTGCACTAAAGAAAGATGTGAAAACTCAATTCCTATCTTCGGTTAAGAGCTCCGTTTCTGAATATGACAATAATCCTGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8049#2 ------------------------------------------------------------ consensus_8049#3 ------------------------------------------------------------ consensus_8049#0 AAGCGTATGCGCGATTCACAGTTCGCGTTACGAACTGTTATACGGATTTTAACTTGGTTA 60 consensus_8049#1 ----------------------CAGAGTTAATTGTTGTGCACGAAAATACTCGAAGAATG 38 consensus_8049#2 ------------------------------------------------------------ consensus_8049#3 ------------------------------------------------------------ consensus_8049#0 TATAAATGCCAAATGTTGGTGGTAATGAAAA-TGTACTCCGTGTGCTAGTGTCTACAGAT 119 consensus_8049#1 CAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAGTGAT 98 consensus_8049#2 ------------------------------------------------GGCCGCCGCAGT 12 consensus_8049#3 ------------------------------------------------------------ consensus_8049#0 AATCATGTAGGATATGCCGAAAAAGATGGTTTAAGGGGTCAAGACTCTTTTCGAACATTT 179 consensus_8049#1 ACT-ATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACA 157 consensus_8049#2 AATTCTATTACATTGCCTCCTATGCTGGTTCATCAGCGATTGGCAATGTGGACATATGAT 72 consensus_8049#3 -------------------------CTCTCGAATTGCTATTAATAAT-TATTCTTCTGGA 34 consensus_8049#0 GAGGAGATTCTACGTCTGGCAGTTTCACACAATGTGGATTTTATCTTATTTGCAGGCGAC 239 consensus_8049#1 ACGTTTGATCTTCG-CTGGTAAGCAGTTGGAAGATGGACGT-ACTCTGTCTGACTACAAC 215 * * * * * consensus_8049#2 GTGGTCTA-GTGAAGCGATCCTATCGGTCATGCGT------CACGATGATACCGGTGTGT 125 consensus_8049#3 ATCGACTC-AAATATCAAAAATCTCG-TCAT-CTT------CGTGATATCACTCGGATGC 85 consensus_8049#0 ATTTTTCATGAAAGTCGACCTTCTATGAGGTCTTTA-----CATGAAGTAATGCGTTTAC 294 consensus_8049#1 ATCCAGAA--AGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATAT 273 * * * * * * * * * * consensus_8049#2 GTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACG-TACAGAAAAGAGACAGTGAAAAAC 184 consensus_8049#3 TTCCTAT--TTTTGCTTG---GATTTTTCGGATTT-TGTGGGCTATCTACCGAAAATACT 139 consensus_8049#0 TTCGTATA-TATTGTTTGGGAAGTAAACCAGTTCAATTTGAACTTCTTAGTGAAGCCAAG 353 consensus_8049#1 TTGTGAAGACGTTGACTGGTAAGACGATCACGTTG----GAGGTGGAGCCTAGTGATACT 329 * *** ** * consensus_8049#2 AGTGTGAATACCAA-GGAATGCAACATAGAGTATATG--TGAGATTGTGAAC-TTGATTT 240 consensus_8049#3 TGT-----TGTCTA-ATCGTGTA-CACAGT-TCTGCT--TTCAGTTATGG---TTGCAGC 186 consensus_8049#0 ACTATATTTGCTAATACAGCGTTTCATACTGCAAATTATTTAGATGGTAATC-TAAATGT 412 consensus_8049#1 ATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGT 389 * * * * ** * * consensus_8049#2 TGGATTGGC-ATATCGAGATTGTCTGTTGATTGTGCCAGGT------GTCGTGATGGTCG 293 consensus_8049#3 TGAAATAGC-AG--CAGGA----------ATAGCGGCAGTT------GCACTAAAGAAAG 227 consensus_8049#0 TGGAATTCCCGTGTTTACCATTCATGGAAATCACGATGATCCTTCAGGTCCTGGTGGCTT 472 consensus_8049#1 TTGATCTTCGCTGGTAAGCAGTTG-GAAGATGGACGTACTCT-----GTCTGACTACAAC 443 * * * ** * consensus_8049#2 ATGTA--GTTGACTTGAGTTTTCTACTTATGAGT-AATTGTGAGGTGATAGTG--TGTGG 348 consensus_8049#3 ATGTG--AA-AACTCAA--TTCCTATCTTCGGTT-AAGAGCTCCGTTTCTGAA--TATGA 279 consensus_8049#0 ATGTGCAGCTGATTTAC--TGCATACCGCTGGTTTGATAAATCTGTTTGGGAAG-TTCTC 529 consensus_8049#1 ATCCA-GAAGGAGTCAA---CCTTACATCTTGTTTTACGCCTGCGTGGAGGCATATGATT 499 ** * * ** * * ** * * consensus_8049#2 ATTGATGGTATTGGATCAGAAGCGAGAGGGACAGAGA----------------------- 385 consensus_8049#3 --CAATAATCCTGACT-------------------------------------------- 293 consensus_8049#0 TTCAGTAGAACGGATCGATTTGACCCCCGTTCTGCTACGCAAGGGAAATACTCGTGTGGC 589 consensus_8049#1 TCTGTTAAAGTTAATTTCAAAAATAAATTNTAATTTGA---------------------- 537 * consensus_8049#2 ------------------------------------------------------------ consensus_8049#3 ------------------------------------------------------------ consensus_8049#0 CTTATATGGCCTTGGATCTGTTCGAGAAGAGAGGCTTCATCGTTTGTTTTTAAATAATAG 649 consensus_8049#1 ------------------------------------------------------------ consensus_8049#2 ------------------------------------------------------------ consensus_8049#3 ------------------------------------------------------------ consensus_8049#0 TGTCACTTTTTACCGTCCTACTGAGTGTGTAGATGACTGGTTTTCAGTTTGCACAGTTCA 709 consensus_8049#1 ------------------------------------------------------------ consensus_8049#2 ------------------------------------------------------------ consensus_8049#3 ------------------------------------------------------------ consensus_8049#0 CCAAAATCGTGTTCATCACGGCCCTACAAGTTATTTGCCTGAAAACTTCCTCCCAGATTT 769 consensus_8049#1 ------------------------------------------------------------ consensus_8049#2 ----------------------------- consensus_8049#3 ----------------------------- consensus_8049#0 TCTTGACCTCATTATTTGNGGCCATGAAC 798 consensus_8049#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||