cluster # 8049

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Schistosoma mansoni
cluster # 8049 cluster # 8049 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8049#0 length = 798 sequences # 3
consensus_8049#1 length = 537 sequences # 1

consensus_8049#2 length = 385 sequences # 1
consensus_8049#3 length = 293 sequences # 1

consensusID : consensus_8049#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 798
fasta sequence

                              [AAGCGTATGCGCGATTCACAGTTCGCGTTACGAACTGTTATACGGATTTTAACTTGGTTATATAAATGCCAAATGTTGGTGGTAATGAAAATGTACTCCGTGTGCTAGTGTCTACAGATAATCATGTAGGATATGCCGAAAAAGATGGTTTAAGGGGTCAAGACTCTTTTCGAACATTTGAGGAGATTCTACGTCTGGCAGTTTCACACAATGTGGATTTTATCTTATTTGCAGGCGACATTTTTCATGAAAGTCGACCTTCTATGAGGTCTTTACATGAAGTAATGCGTTTACTTCGTATATATTGTTTGGGAAGTAAACCAGTTCAATTTGAACTTCTTAGTGAAGCCAAGACTATATTTGCTAATACAGCGTTTCATACTGCAAATTATTTAGATGGTAATCTAAATGTTGGAATTCCCGTGTTTACCATTCATGGAAATCACGATGATCCTTCAGGTCCTGGTGGCTTATGTGCAGCTGATTTACTGCATACCGCTGGTTTGATAAATCTGTTTGGGAAGTTCTCTTCAGTAGAACGGATCGATTTGACCCCCGTTCTGCTACGCAAGGGAAATACTCGTGTGGCCTTATATGGCCTTGGATCTGTTCGAGAAGAGAGGCTTCATCGTTTGTTTTTAAATAATAGTGTCACTTTTTACCGTCCTACTGAGTGTGTAGATGACTGGTTTTCAGTTTGCACAGTTCACCAAAATCGTGTTCATCACGGCCCTACAAGTTATTTGCCTGAAAACTTCCTCCCAGATTTTCTTGACCTCATTA-TTTGNGGCCATGAAC]

[+] EMBL CD162737             [AAGCGTATGCGCGATTCACAGTTCGCGTTACGAACTGTTATACGGATTTTAACTTGGTTATATAAATGCCAAATGTTGGTGGTAATGAAAATGTACTCCGTGTGCTAGTGTCTACAGATAATCATGTAGGATATGCCGAAAAAGATGGTTTAAGGGGTCAAGACTCTTTTCGAACATTTGAGGAGATTCTACGTCTGGCAGTTTCACACAATGTGGATTTTATCTTATTTGCAGGCGACATTTTTCATGAAAGTCGACCTTCTATGAGGTCTTTACATGAAGTAATGCGTTTACTTCGTATATATTGTTTGGGAAGTAAACCAGTTCAATTTGAACTTCTTAGTGAAGCCAAGACTATATTTGCTAATACAGCGTTTCATACTGCAAATTATTTAGATGGTAATCTAAATGTTGGAATTCCCGTGTTTACCATTCATGGAAATCACGATGAT                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD154360             [                                                                                                                                                                                                                                                TTTTTCATGAAAGTCGACCTTCTATGAGGTCTTTACATGAAGTAATGCGTTTACTTCGTATATATTGTTTGGGAAGTAAACCAGTTCAATTTGAACTTCTTAGTGAAGCCAAGACTATATTTGCTAATACAGCGTTTCATACTGCAAATTATTTAGATGGTAATCTAAATGTTGGAATTCCCGTGTTTACCATTCATGGAAATCACGATGATCCTTCAGGTCCTGGTGGCTTATGTGCAGCTGATTTACTGCATACCGCTGGTTTGATAAATCTGTTTGGGAAGTTCTCTTCAGTAGAACGGATCGATTTGACCCCCGTTCTGCTACGCAAGGGAAATACTCGTGTGGCCTTATATGGCCTTGGATCTGTTCGAGAAGAGAGGCTTCATCGTTTGTTTTTAAATAATAGTGTCACTTTTTACCGTCCTACTGAGTGTGTAGATGACTGGTTTTCAGTTTGCACAGTTCACCAAAATCGTGTTCATCACGGCCCTACAAGTTATTTGCCTGAAAACTTCCTCCCAGATTTTCTTGACCTCATTA TTTGNGGCC      ]
[+] EMBL CD115362             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCGTTCTGCTACGCAAGGGAAATACTCGTGTGGCCTTATATGGCCTTGGATCTGTTCGAGAAGAGAGGCTTCATCGTTTGTTTTTAAATAATAGTGTCACTTTTTACCGTCCTACTGAGTGTGTAGATGACTGGTTTTCAGTTTGCACAGTTCACCAAAATCGTGTTCATCACGGCCCTACAAGTTATTTGCCTGAAAACTTCCTCCCAGATTTTCTTGACCTCATTANTTTG GGCCATGAAC]




>consensus_8049#0
AAGCGTATGCGCGATTCACAGTTCGCGTTACGAACTGTTATACGGATTTTAACTTGGTTA
TATAAATGCCAAATGTTGGTGGTAATGAAAATGTACTCCGTGTGCTAGTGTCTACAGATA
ATCATGTAGGATATGCCGAAAAAGATGGTTTAAGGGGTCAAGACTCTTTTCGAACATTTG
AGGAGATTCTACGTCTGGCAGTTTCACACAATGTGGATTTTATCTTATTTGCAGGCGACA
TTTTTCATGAAAGTCGACCTTCTATGAGGTCTTTACATGAAGTAATGCGTTTACTTCGTA
TATATTGTTTGGGAAGTAAACCAGTTCAATTTGAACTTCTTAGTGAAGCCAAGACTATAT
TTGCTAATACAGCGTTTCATACTGCAAATTATTTAGATGGTAATCTAAATGTTGGAATTC
CCGTGTTTACCATTCATGGAAATCACGATGATCCTTCAGGTCCTGGTGGCTTATGTGCAG
CTGATTTACTGCATACCGCTGGTTTGATAAATCTGTTTGGGAAGTTCTCTTCAGTAGAAC
GGATCGATTTGACCCCCGTTCTGCTACGCAAGGGAAATACTCGTGTGGCCTTATATGGCC
TTGGATCTGTTCGAGAAGAGAGGCTTCATCGTTTGTTTTTAAATAATAGTGTCACTTTTT
ACCGTCCTACTGAGTGTGTAGATGACTGGTTTTCAGTTTGCACAGTTCACCAAAATCGTG
TTCATCACGGCCCTACAAGTTATTTGCCTGAAAACTTCCTCCCAGATTTTCTTGACCTCA
TTATTTGNGGCCATGAAC

consensusID : consensus_8049#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence

                              [CAGAGTTAATTGTTGTGCACGAAAATACTCGAAGAATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCCTGCGTGGAGGCATATGATTTCTGTTAAAGTTAATTTCAAAAATAAATTNTAATTTGA]

[+] EMBL AW017171             [CAGAGTTAATTGTTGTGCACGAAAATACTCGAAGAATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCCTGCGTGGAGGCATATGATTTCTGTTAAAGTTAATTTCAAAAATAAATTNTAATTTGA]




>consensus_8049#1
CAGAGTTAATTGTTGTGCACGAAAATACTCGAAGAATGCAGATATTCGTAAAGACATTGA
CAGGGAAGACTATAACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGA
AGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGC
AGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATC
TTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGA
TCACGTTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACA
AAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATG
GACGTACTCTGTCTGACTACAACATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCC
TGCGTGGAGGCATATGATTTCTGTTAAAGTTAATTTCAAAAATAAATTNTAATTTGA

consensusID : consensus_8049#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [GGCCGCCGCAGTAATTCTATTACATTGCCTCCTATGCTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACCAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGAAGCGAGAGGGACAGAGA]

[+] EMBL CD184117             [GGCCGCCGCAGTAATTCTATTACATTGCCTCCTATGCTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACCAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGAAGCGAGAGGGACAGAGA]




>consensus_8049#2
GGCCGCCGCAGTAATTCTATTACATTGCCTCCTATGCTGGTTCATCAGCGATTGGCAATG
TGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGG
TGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAA
AAACAGTGTGAATACCAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTT
TGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGT
TGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATT
GGATCAGAAGCGAGAGGGACAGAGA

consensusID : consensus_8049#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [CTCTCGAATTGCTATTAATAATTATTCTTCTGGAATCGACTCAAATATCAAAAATCTCGTCATCTTCGTGATATCACTCGGATGCTTCCTATTTTTGCTTGGATTTTTCGGATTTTGTGGGCTATCTACCGAAAATACTTGTTGTCTAATCGTGTACACAGTTCTGCTTTCAGTTATGGTTGCAGCTGAAATAGCAGCAGGAATAGCGGCAGTTGCACTAAAGAAAGATGTGAAAACTCAATTCCTATCTTCGGTTAAGAGCTCCGTTTCTGAATATGACAATAATCCTGACT]

[+] EMBL CD148755             [CTCTCGAATTGCTATTAATAATTATTCTTCTGGAATCGACTCAAATATCAAAAATCTCGTCATCTTCGTGATATCACTCGGATGCTTCCTATTTTTGCTTGGATTTTTCGGATTTTGTGGGCTATCTACCGAAAATACTTGTTGTCTAATCGTGTACACAGTTCTGCTTTCAGTTATGGTTGCAGCTGAAATAGCAGCAGGAATAGCGGCAGTTGCACTAAAGAAAGATGTGAAAACTCAATTCCTATCTTCGGTTAAGAGCTCCGTTTCTGAATATGACAATAATCCTGACT]




>consensus_8049#3
CTCTCGAATTGCTATTAATAATTATTCTTCTGGAATCGACTCAAATATCAAAAATCTCGT
CATCTTCGTGATATCACTCGGATGCTTCCTATTTTTGCTTGGATTTTTCGGATTTTGTGG
GCTATCTACCGAAAATACTTGTTGTCTAATCGTGTACACAGTTCTGCTTTCAGTTATGGT
TGCAGCTGAAATAGCAGCAGGAATAGCGGCAGTTGCACTAAAGAAAGATGTGAAAACTCA
ATTCCTATCTTCGGTTAAGAGCTCCGTTTCTGAATATGACAATAATCCTGACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8049#2      ------------------------------------------------------------
consensus_8049#3      ------------------------------------------------------------
consensus_8049#0      AAGCGTATGCGCGATTCACAGTTCGCGTTACGAACTGTTATACGGATTTTAACTTGGTTA 60
consensus_8049#1      ----------------------CAGAGTTAATTGTTGTGCACGAAAATACTCGAAGAATG 38
                                                                                  

consensus_8049#2      ------------------------------------------------------------
consensus_8049#3      ------------------------------------------------------------
consensus_8049#0      TATAAATGCCAAATGTTGGTGGTAATGAAAA-TGTACTCCGTGTGCTAGTGTCTACAGAT 119
consensus_8049#1      CAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAGTGAT 98
                                                                                  

consensus_8049#2      ------------------------------------------------GGCCGCCGCAGT 12
consensus_8049#3      ------------------------------------------------------------
consensus_8049#0      AATCATGTAGGATATGCCGAAAAAGATGGTTTAAGGGGTCAAGACTCTTTTCGAACATTT 179
consensus_8049#1      ACT-ATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACA 157
                                                                                  

consensus_8049#2      AATTCTATTACATTGCCTCCTATGCTGGTTCATCAGCGATTGGCAATGTGGACATATGAT 72
consensus_8049#3      -------------------------CTCTCGAATTGCTATTAATAAT-TATTCTTCTGGA 34
consensus_8049#0      GAGGAGATTCTACGTCTGGCAGTTTCACACAATGTGGATTTTATCTTATTTGCAGGCGAC 239
consensus_8049#1      ACGTTTGATCTTCG-CTGGTAAGCAGTTGGAAGATGGACGT-ACTCTGTCTGACTACAAC 215
                                                     *   *    *     * *           

consensus_8049#2      GTGGTCTA-GTGAAGCGATCCTATCGGTCATGCGT------CACGATGATACCGGTGTGT 125
consensus_8049#3      ATCGACTC-AAATATCAAAAATCTCG-TCAT-CTT------CGTGATATCACTCGGATGC 85
consensus_8049#0      ATTTTTCATGAAAGTCGACCTTCTATGAGGTCTTTA-----CATGAAGTAATGCGTTTAC 294
consensus_8049#1      ATCCAGAA--AGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATAT 273
                       *             * *   *        *   *      *  *     *      *  

consensus_8049#2      GTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACG-TACAGAAAAGAGACAGTGAAAAAC 184
consensus_8049#3      TTCCTAT--TTTTGCTTG---GATTTTTCGGATTT-TGTGGGCTATCTACCGAAAATACT 139
consensus_8049#0      TTCGTATA-TATTGTTTGGGAAGTAAACCAGTTCAATTTGAACTTCTTAGTGAAGCCAAG 353
consensus_8049#1      TTGTGAAGACGTTGACTGGTAAGACGATCACGTTG----GAGGTGGAGCCTAGTGATACT 329
                       *         ***  **                                       *  

consensus_8049#2      AGTGTGAATACCAA-GGAATGCAACATAGAGTATATG--TGAGATTGTGAAC-TTGATTT 240
consensus_8049#3      TGT-----TGTCTA-ATCGTGTA-CACAGT-TCTGCT--TTCAGTTATGG---TTGCAGC 186
consensus_8049#0      ACTATATTTGCTAATACAGCGTTTCATACTGCAAATTATTTAGATGGTAATC-TAAATGT 412
consensus_8049#1      ATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGT 389
                        *     *    *      *   **                  *  *            

consensus_8049#2      TGGATTGGC-ATATCGAGATTGTCTGTTGATTGTGCCAGGT------GTCGTGATGGTCG 293
consensus_8049#3      TGAAATAGC-AG--CAGGA----------ATAGCGGCAGTT------GCACTAAAGAAAG 227
consensus_8049#0      TGGAATTCCCGTGTTTACCATTCATGGAAATCACGATGATCCTTCAGGTCCTGGTGGCTT 472
consensus_8049#1      TTGATCTTCGCTGGTAAGCAGTTG-GAAGATGGACGTACTCT-----GTCTGACTACAAC 443
                      *  *    *                    **                *            

consensus_8049#2      ATGTA--GTTGACTTGAGTTTTCTACTTATGAGT-AATTGTGAGGTGATAGTG--TGTGG 348
consensus_8049#3      ATGTG--AA-AACTCAA--TTCCTATCTTCGGTT-AAGAGCTCCGTTTCTGAA--TATGA 279
consensus_8049#0      ATGTGCAGCTGATTTAC--TGCATACCGCTGGTTTGATAAATCTGTTTGGGAAG-TTCTC 529
consensus_8049#1      ATCCA-GAAGGAGTCAA---CCTTACATCTTGTTTTACGCCTGCGTGGAGGCATATGATT 499
                      **         * *         **        *  *       **    *    *    

consensus_8049#2      ATTGATGGTATTGGATCAGAAGCGAGAGGGACAGAGA----------------------- 385
consensus_8049#3      --CAATAATCCTGACT-------------------------------------------- 293
consensus_8049#0      TTCAGTAGAACGGATCGATTTGACCCCCGTTCTGCTACGCAAGGGAAATACTCGTGTGGC 589
consensus_8049#1      TCTGTTAAAGTTAATTTCAAAAATAAATTNTAATTTGA---------------------- 537
                           *                                                      

consensus_8049#2      ------------------------------------------------------------
consensus_8049#3      ------------------------------------------------------------
consensus_8049#0      CTTATATGGCCTTGGATCTGTTCGAGAAGAGAGGCTTCATCGTTTGTTTTTAAATAATAG 649
consensus_8049#1      ------------------------------------------------------------
                                                                                  

consensus_8049#2      ------------------------------------------------------------
consensus_8049#3      ------------------------------------------------------------
consensus_8049#0      TGTCACTTTTTACCGTCCTACTGAGTGTGTAGATGACTGGTTTTCAGTTTGCACAGTTCA 709
consensus_8049#1      ------------------------------------------------------------
                                                                                  

consensus_8049#2      ------------------------------------------------------------
consensus_8049#3      ------------------------------------------------------------
consensus_8049#0      CCAAAATCGTGTTCATCACGGCCCTACAAGTTATTTGCCTGAAAACTTCCTCCCAGATTT 769
consensus_8049#1      ------------------------------------------------------------
                                                                                  

consensus_8049#2      -----------------------------
consensus_8049#3      -----------------------------
consensus_8049#0      TCTTGACCTCATTATTTGNGGCCATGAAC 798
consensus_8049#1      -----------------------------