These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8052#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 591 fasta sequence [ACAGGAGGAGCATAGGCCGCTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTTTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTATGTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTTTTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATCTATTCCTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCCTCGTCATTGACTGGTCTCTGTGGTTGACTATATTTCCCTGCTAGATTCCTCGTTATATCGTACAGTTGTCTGATATTTCCTTCTGCCACAGCTTCTTCCGCCGTCGCTGCTAGTTCTCCCATGTATTCCTCCGGT] [+] EMBL CD086007 [ACAGGAGGAGCATAGGCCGCTCATTGGTATTCTCTATCTAACTCTGTCCTGGACAATGCTTTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTATGTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTTTTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGCCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATCTATTCCTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCCTCGTCATTGACTGGTCTCTGTGGTTGACTATATTTCCCTGCTAGATTCCTCGTTATATCGTACAGTTGTCTGATATTTCCTTCTGCCACAGCTTCTTCCGCCGTCGCTGCTAGTTC ] [-] EMBL CD086236 [ CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTTTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTCCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTATGTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTTTTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATCTATTCCTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCCTCGTCATTGACTGGTCTCTGTGGTTGACTATATTTCCCTGCTAGATTCCTCGTTATATCGTACAGTTGTCTGATATTTCCTTCTGCCACAGCTTCTTCCGCCGTCGCTGCTAGTTCTCCCATGTATTCCTCCGGT] [-] EMBL CD086224 [ CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTTTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTATGTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCATGATTTTTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTGCA ] [-] EMBL CD086001 [ CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTTTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTATGTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTTTTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACA ] [-] EMBL CD092576 [ GAAGGTCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATATATTCCTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCATCGTCATTGACTGGTCTCTGTGGTTGACTATATTTCCCTGCTAGATTCCTCGTTATATCGCACAGTTGTGTGATATTTCCTTCTGCCACAG ] consensusID : consensus_8052#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 218 fasta sequence [CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTCTCAGGCTCTTTCTAGACCCTATTTATCCTTCTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAAGTTCAATGTCGGCCAG] [-] EMBL CD086143 [CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTCTCAGGCTCTTTCTAGACCCTATTTATCCTTCTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAAGTTCAATGTCGGCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8052#0 ACAGGAGGAGCATAGGCCGCTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCT 60 consensus_8052#1 -------------------CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCT 41 ***************************************** consensus_8052#0 TTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGG 120 consensus_8052#1 CTCAGGCTCTTTCTAGACCCTATTTATCCTTCTTATATCTGCGTCCAATCCTCAAAACGG 101 ****************************** **************************** consensus_8052#0 TATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTT 180 consensus_8052#1 TATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTT 161 ************************************************************ consensus_8052#0 CTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTAT 240 consensus_8052#1 CTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAAGTTCAATGTCGGCCAG--- 218 ***************************************** *** ** ** ** consensus_8052#0 GTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTT 300 consensus_8052#1 ------------------------------------------------------------ consensus_8052#0 TTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCC 360 consensus_8052#1 ------------------------------------------------------------ consensus_8052#0 AGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATCTATTC 420 consensus_8052#1 ------------------------------------------------------------ consensus_8052#0 CTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCCTCGTCATTGACTGGTCTCTGTGGT 480 consensus_8052#1 ------------------------------------------------------------ consensus_8052#0 TGACTATATTTCCCTGCTAGATTCCTCGTTATATCGTACAGTTGTCTGATATTTCCTTCT 540 consensus_8052#1 ------------------------------------------------------------ consensus_8052#0 GCCACAGCTTCTTCCGCCGTCGCTGCTAGTTCTCCCATGTATTCCTCCGGT 591 consensus_8052#1 --------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||