These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8061#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [TAGGTATACGGTTCAGCTTTAGTGCATGGGATCCAAACGCGAGAGTTAATAAAACCCGACTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCAGGAAAAACGGACGTGTTGTTTGTTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACGTTACGATGGTACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAACGCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTACCACAAAGACTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAGGCCAGGTCGACGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGTTGAGGATC] [+] EMBL CD062555 [TAGGTATACGGTTCAGCTTTAGTGCATGGGATCCAAACGCGAGAGTTAATAAAACCCGACTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCAGGAAAAACGGACGTGTTGTTTGTTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACGTTACGATGGTACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAACGCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTACCACAAAGACTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAGGCCAGGTCGACGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGTTGAGGATC] consensusID : consensus_8061#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 419 fasta sequence [GATCTAGAGTATACCATCGGGATCCAAACGCGAGAGTTAATAAAACCCGACTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCA-GGAAAAACGGACGTGTTGTTTG-TTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACGTTACGATGGTACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAACGCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTACCACAAAGACTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAG-GCCAGGTCGACGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGTTGAGGATC] [+] EMBL CD061895 [GATCTAGAGTATACCATCGGGATCCAAACGCGAGAGTTAATAAAACCCGACTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCA GGAAAAACGGACGTGTTGTTTG TTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACGTTACGATGGTACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAACGCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTACCACAAAGACTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAG GCCAGGTCGACGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGTTGAGGATC] [-] EMBL CD062660 [ AACGCGAGAGTTAATAAAACCCGGCTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCA GGAAAAACGGACGTGTTGTTTG TTGAGAGTGTT ] [+] EMBL CD062390 [ catcgACGCGAGAGTTAATAAAACCCGACTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCACGGAAAAACGGACGTGTTGTTTG TTGAGAG ] [-] EMBL CD062493 [ GAGAGTTAATAAAACCCGACTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCA GGAAAAACGGACGTGTTGTTTG TTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACGTTACGATGGTACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAACGCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTACCACAAAGACTGCGATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAG GCCAGGTCGACGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGTTGAGatta] [-] EMBL CD062473 [ AGAGTTAAT AAACCCGACTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGTACAGATCTCA GGAAATACGGACGTGTTGTTTGTTTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACGTTACGATGGTACTGGCTTGAATACACACAGTGTTTGCACTTATATCGCTTTGAAGTATACGCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTACCACAAAGACTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTGGGAAGTGCCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8061#0 TAGGTATACGGTTCAGCTTTAGTGCATGGGATCCAAACGCGAGAGTTAATAAAACCCGAC 60 consensus_8061#1 ---------GATCTAGAGTATACCATCGGGATCCAAACGCGAGAGTTAATAAAACCCGAC 51 * * ** * ********************************* consensus_8061#0 TCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCAGGAAAAACGGAC 120 consensus_8061#1 TCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCAGGAAAAACGGAC 111 ************************************************************ consensus_8061#0 GTGTTGTTTGTTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACG 180 consensus_8061#1 GTGTTGTTTGTTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACG 171 ************************************************************ consensus_8061#0 TTACGATGGTACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAAC 240 consensus_8061#1 TTACGATGGTACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAAC 231 ************************************************************ consensus_8061#0 GCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTA 300 consensus_8061#1 GCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTA 291 ************************************************************ consensus_8061#0 CCACAAAGACTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAGG 360 consensus_8061#1 CCACAAAGACTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAGG 351 ************************************************************ consensus_8061#0 CCAGGTCGACGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGT 420 consensus_8061#1 CCAGGTCGACGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGT 411 ************************************************************ consensus_8061#0 TGAGGATC 428 consensus_8061#1 TGAGGATC 419 ******** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||