These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 575 fasta sequence [TTAATAAACTAGAATCTACGATAAACTTAAACTACCATAAACATTAACAGTCCTATAAACATAAAGTAAATAACATAAACTAGTAAACCTTTTATACCCATTACTATAA-TACCTTTCCTGTCTAATAATGAATTTATAACTAAACCTAATACCATTAATCCTAACAATCTACCCCCAAACAAAATCATGACTGCTGATAAAATCAATACAAAATCCTGTCTTAATAAACTTATAACGGCCACTCCCACTTCTCCAAAAAACTGTAAAGTTGGGGGAAAACTCGATGCACCCATAAATACCATGACACTTACTACCTGAATGAAAATAACCGAACAAAATA-CAGGTGATAAAATTAATCATCTTCGAGACAATATGCACCTATAGCCTCATCATATAAATATAAACATTGCACTTACAGAACACCCATGACCATAAAGATACCAACAAACTAATTAAATCCGTATTATACTCACCAAAAATCAATATTACAACCCTCACCACTATATGTAACAAACTCAAAACAGCCAATCAACGCTTAGAATCAACTTCAGCATAAGCTCAACACATAAATACTA] [+] EMBL AI977494 [TTAATAAACTAGAATCTACGATTAACTTAAACTACCATAAACACTAACAGTCCTATAAACATAAAGTAAATAACATAAACTAGTAAACCTTTTATACCCATTACTATAA TACCTTTCCTGTCTAATAATGAATTTATAACTAAACCTAATACCATTAATCCTAACAATCTACCCCCAAACAAAATCATGACTGCTGATAAAATCAATACAAAATCCTGTCTTAATAAACTTATAACGGCCACTCCCACTTCTCCAAAAAACTGTAAAGTTGGGGGAAAACTCGATGCACCCATAAATACCATGACACTTACTACCTGAATGAAAATAACCGAACAAAATA CAGGTGATAAAATTAATCAT ] [+] EMBL SMT14487 [ AAACTAGANTCTACGATAAACTTAAACTACCATAAACATTAACAGTCCTATAAACATAAAGTAAATAACATAAACTAGTAAACCTTTTATACCCNTTACTATAANTACCTTTCCTGTCT ATAATGAATTTATAACTAAACCTAA ] [+] EMBL BF936171 [ AACTAGAATCTACGATAAACTTAAACTACCATAAACATTAACAGTCCTATAAACATAAAGTAAATAACATAAACTAGTAAACCTTTTATACCCATTACTATAA TACCTTTCCTGTCTAATAATGAATTTATAACTAAACCTAATACCATTAATCCTAACAATCTACCCCCAAACAAAATCATGACTGCTGATAAAATCAATACAAAATCCTGTCTTAATAAACTTATAACGGCCACTCCCACTTCTCCAAAAAACTGTAAAGTTGGGGGAAAACTCGATGCACCCATAAATACCATGACACTTACTACCTGAATGAAAATAACCGAACAAAATACCAGTTGATAAAATTAATCATCTTCGAGACAATATGCACCTATAGCCTCATCATATAAATATAAACATTGCACTTACAGAACACCCATGACCATAAAGATACCAACAAACTAATTAAATCCGTATTATACTCACCAAAAATCAATATTACAACCCTCACCACTATATGTAACAAACTCAAAACAGCCAATCAACGCTTAGAATCAACTTCAGCATAAGCTCAACACATAAATACTA] [-] EMBL SM268 [ CTAGAATCTACGATAAACTTAAACTACCATAAACATTAATAGTCCTATTAATATNAAGTAAATAACATAAACTANCAAACCTTTTAT ] [+] EMBL SMT14520 [ GAATCTACGATAAACTTAAACTACCATAAACATTAACAGTCCTATAAACATAAAGTAAATAACATAAACTAGTAAACCTTTTATACCCATTACTATAA TACCTTTCCNGTCTAATAATGANTTTNTAACTAANCCTAATACCATTAATCCTAACANTCTACCNCCAAACAAAATCATGACTGCGGATAAANTCAATACAAAATCCTGTNTTAATAAACTTATNGCGGCCNCTCCCACTTCTCCAAAAAACTGTAAAGTTGGGGGAAAACTCGAT ] consensusID : consensus_8067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [AACTAGAATCTNCGATAAACTTNAGCTACCATAANCATTNATAGTCCTATTAATATAAAGTAAATAACATAANCTAGCAAACCTTTTATACCCCTTACTATNACACCTTTCCTATCTAATAATGAATTNATAACTAAACCCAATACCATTAATCCTAGCAATCTACCCCCAAACAAAGTTATAACTGCTGATAAAATCAATACAAAATCCTGTCTTAATAGACTTATAACGGCCACTACCACTTCTCCAAAAAACTGTAAAGTTGGAGGAAAACTCGATACACCCATAAACACCACGACACTTACTGCCTGAATGAAAATAACTGAACAAAATACAGTTGATAAAATTA] [-] EMBL SM663 [AACTAGAATCTNCGATAAACTTNAGCTACCATAANCATTNATAGTCCTATTAATATAAAGTAAATAACATAANCTAGCAAACCTTTTATACCCCTTACTATNACACCTTTCCTATCTAATAATGAATTNATAACTAAACCCAATACCATTAATCCTAGCAATCTACCCCCAAACAAAGTTATAACTGCTGATAAAATCAATACAAAATCCTGTCTTAATAGACTTATAACGGCCACTACCACTTCTCCAAAAAACTGTAAAGTTGGAGGAAAACTCGATACACCCATAAACACCACGACACTTACTGCCTGAATGAAAATAACTGAACAAAATACAGTTGATAAAATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8067#0 TTAATAAACTAGAATCTACGATAAACTTAAACTACCATAAACATTAACAGTCCTATAAAC 60 consensus_8067#1 ------AACTAGAATCTNCGATAAACTTNAGCTACCATAANCATTNATAGTCCTATTAAT 54 *********** ********** * ********* **** * ******** ** consensus_8067#0 ATAAAGTAAATAACATAAACTAGTAAACCTTTTATACCCATTACTATAATACCTTTCCTG 120 consensus_8067#1 ATAAAGTAAATAACATAANCTAGCAAACCTTTTATACCCCTTACTATNACACCTTTCCTA 114 ****************** **** *************** ******* * ********* consensus_8067#0 TCTAATAATGAATTTATAACTAAACCTAATACCATTAATCCTAACAATCTACCCCCAAAC 180 consensus_8067#1 TCTAATAATGAATTNATAACTAAACCCAATACCATTAATCCTAGCAATCTACCCCCAAAC 174 ************** *********** **************** **************** consensus_8067#0 AAAATCATGACTGCTGATAAAATCAATACAAAATCCTGTCTTAATAAACTTATAACGGCC 240 consensus_8067#1 AAAGTTATAACTGCTGATAAAATCAATACAAAATCCTGTCTTAATAGACTTATAACGGCC 234 *** * ** ************************************* ************* consensus_8067#0 ACTCCCACTTCTCCAAAAAACTGTAAAGTTGGGGGAAAACTCGATGCACCCATAAATACC 300 consensus_8067#1 ACTACCACTTCTCCAAAAAACTGTAAAGTTGGAGGAAAACTCGATACACCCATAAACACC 294 *** **************************** ************ ********** *** consensus_8067#0 ATGACACTTACTACCTGAATGAAAATAACCGAACAAAATACAGGTGATAAAATTAATCAT 360 consensus_8067#1 ACGACACTTACTGCCTGAATGAAAATAACTGAACAAAATACAGTTGATAAAATTA----- 349 * ********** **************** ************* *********** consensus_8067#0 CTTCGAGACAATATGCACCTATAGCCTCATCATATAAATATAAACATTGCACTTACAGAA 420 consensus_8067#1 ------------------------------------------------------------ consensus_8067#0 CACCCATGACCATAAAGATACCAACAAACTAATTAAATCCGTATTATACTCACCAAAAAT 480 consensus_8067#1 ------------------------------------------------------------ consensus_8067#0 CAATATTACAACCCTCACCACTATATGTAACAAACTCAAAACAGCCAATCAACGCTTAGA 540 consensus_8067#1 ------------------------------------------------------------ consensus_8067#0 ATCAACTTCAGCATAAGCTCAACACATAAATACTA 575 consensus_8067#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||