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Schistosoma mansoni
cluster # 8069 cluster # 8069       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8069#0 length = 1004 sequences # 3  
consensus_8069#1 length = 718 sequences # 3  

consensusID : consensus_8069#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1004
fasta sequence
                              [CCTTCNAGGCCATTATTCGGCACGAGGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAAGAAGCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAAAGTTATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAAGTGCATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATTTACTACAAATGCTGTATTGAGTGTAATTACAAATCAACTTATGAAAAATTGTAATCATTGCACTCTTACTAACCCACTGCATATATTTTGTACACGTTGTCGTGATAACAAGTA-TTTCTCTGC-AAGTTTTAATTNGTTG-TGCTGTGA-TAGAAAAAT-ATAGTTAA]

[+] EMBL CD081618             [CCTTCNAGGCCATTATTCGGCACGAGGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAAGAAGCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAAAGTTATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAAGTGCATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATTTACTACAAATGCTGTATTGAGTGT ATTACAAATCNACTTATGAAAAATTGTAATCATTGCACTCTTACTAACCCACTGCATATATTTTGTACACGTTGTCGTGATACCAAGTA TTTCTCTGC AAGTTTTAATTNGTTG TGCTGTGA TAGAAAAAT ATAGTT  ]
[-] EMBL CD074088             [                                                                                                                                                                                                                                                                                                AAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAAGAAGCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAAAGTTATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAAGTGCATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATTTACTACAAATTCTGTATTGAGTGTAATTACAAATCAACTTATGAAAAATTGTAATCATTGCACTCTTACTAACCCACTGCATATATTTTGT  ACGTTGTCGTGATAACAAGTA T                                                     ]
[-] EMBL CD075441             [                                                                                                                                                                                                                                                                                                                                                                                                             AACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAAGAAGCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAAAGTTATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAAGTGCATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATTTACTACAAATGCTGTATTGAGTGTAATTACAAATCAACTTATGAAAAATTGTAATCATTGCACTCTTACTAACCCACTGCATATATTTTGTACACGTTGTCGTGATAACAAGTATTTTCTCTGCAAAGTTTTAATT GTTGTTGCTGTGATTAGAAAAATAATAGTTAA]


>consensus_8069#0 CCTTCNAGGCCATTATTCGGCACGAGGGATGAACTTACAGAAGCTGAACATTTACGAATT GAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGT CATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGA GGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAA GAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGT ATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCC CCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTA CGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCT TTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATA CGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGAT ATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAA GAAGCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAA AGTTATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAA GTGCATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATT TACTACAAATGCTGTATTGAGTGTAATTACAAATCAACTTATGAAAAATTGTAATCATTG CACTCTTACTAACCCACTGCATATATTTTGTACACGTTGTCGTGATAACAAGTATTTCTC TGCAAGTTTTAATTNGTTGTGCTGTGATAGAAAAATATAGTTAA



consensusID : consensus_8069#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 718
fasta sequence
                              [TGGCCTCGAGAGCAGAATCGCACGAGGTTTACTCTTGTGATTTGTTGCATGAATACGTTCCCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAAATGTGTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGNGTAGCGAAG]

[+] EMBL CD083451             [TGGCCTCGAGAGCAGAATCGCACGAGGTTTACTCTTGTGATTTGTTGCATGAATACGTTCCCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAAATGTGTGTGATAAATGTCGAGATCCTAAAAATATTCATGCT                                                                                                                                                                                     ]
[+] EMBL CD077717             [                           cggtccgagGTGATTTGTTGCATGAATACGTTCCCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGGTTTATTTTTGAAGAGGAAACTTCTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD079890             [                                         attcgGCACGAGGACGTTCCCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGNGTAGCGAAG]


>consensus_8069#1 TGGCCTCGAGAGCAGAATCGCACGAGGTTTACTCTTGTGATTTGTTGCATGAATACGTTC CCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAA CAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCAT GATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGT TTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAA TTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATA AAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCT GATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGC AAAACATTTGAAGTAAATGTGTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTA ATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGT GAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATG AGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGNGTAGCGAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8069#0      ---------------------------------------------------------CCT 3
consensus_8069#1      TGGCCTCGAGAGCAGAATCGCACGAGGTTTACTCTTGTGATTTGTTGCATGAATACGTTC 60
                                                                                  

consensus_8069#0      TCNAGGCCATTATTCGGCACGAGGGATGAACTTACAGAAGCTGAACATTTACGAATTGAA 63
consensus_8069#1      CCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAA 120
                       * * *  * *   *      * *************************************

consensus_8069#0      CAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCAT 123
consensus_8069#1      CAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCAT 180
                      ************************************************************

consensus_8069#0      GATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGT 183
consensus_8069#1      GATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGT 240
                      ************************************************************

consensus_8069#0      TTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAA 243
consensus_8069#1      TTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAA 300
                      ************************************************************

consensus_8069#0      TTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATA 303
consensus_8069#1      TTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATA 360
                      ************************************************************

consensus_8069#0      AAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCT 363
consensus_8069#1      AAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCT 420
                      ************************************************************

consensus_8069#0      GATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGC 423
consensus_8069#1      GATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGC 480
                      ************************************************************

consensus_8069#0      AAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTA 483
consensus_8069#1      AAAACATTTGAAGTAAATGTGTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTA 540
                      *************** **** ***************************************

consensus_8069#0      ATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGT 543
consensus_8069#1      ATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGT 600
                      ************************************************************

consensus_8069#0      GAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATG 603
consensus_8069#1      GAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATG 660
                      ************************************************************

consensus_8069#0      AGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAAGAA 663
consensus_8069#1      AGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGNGTAGCGAAG-- 718
                      ************************************************ *********  

consensus_8069#0      GCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAAAGT 723
consensus_8069#1      ------------------------------------------------------------
                                                                                  

consensus_8069#0      TATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAAGTG 783
consensus_8069#1      ------------------------------------------------------------
                                                                                  

consensus_8069#0      CATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATTTAC 843
consensus_8069#1      ------------------------------------------------------------
                                                                                  

consensus_8069#0      TACAAATGCTGTATTGAGTGTAATTACAAATCAACTTATGAAAAATTGTAATCATTGCAC 903
consensus_8069#1      ------------------------------------------------------------
                                                                                  

consensus_8069#0      TCTTACTAACCCACTGCATATATTTTGTACACGTTGTCGTGATAACAAGTATTTCTCTGC 963
consensus_8069#1      ------------------------------------------------------------
                                                                                  

consensus_8069#0      AAGTTTTAATTNGTTGTGCTGTGATAGAAAAATATAGTTAA 1004
consensus_8069#1      -----------------------------------------
                                                               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)