These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 945 fasta sequence [AAAATATATTCTTAAAGAATTTTGATTTCTTAAAATGTACAGAGATCTTTGGTTTGTCACATTAAAAGTCAAATGAATAATGATTTGTTAGAGCAATTCGGTCGACAGTTACAGAGTAGCAACCAGATGTTAATTAAATTCCTAAGTCATTAAAAATTTAATTTTCTCGCTACAAAATAACTAACATATCTACATATTTGTGATTTACATTTGTCTATTTGTTTAGTGGATATCCAGCATACTCATCTCCGTCATCTTGAGGTATTCTTTCTTCTTGTAAGCATGTTTCGTGAGTAGGAATTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGGCATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGGAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCATAATATTACCGAAAACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGTTGACACACTGCTTTGGGAAATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCTCAAAAACTGACGAATCCAACCACCATGACCTACAATAAGAACATGTCCTGCATAAGTGGATATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGACGAAGAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAGGATCCAGAAGGAAGTTATGTGTTCGACNTTGCCATCTCGTGAGTACATTCTCTCCCTCGTGCCCTA] [+] EMBL CD074799 [AAAATATATTCTTAAAGAATTTTGATTTCTTAAAATGTACAGAGATCTTTGGTTTGTCACATTAAAAGTCAAATGAATAATGATTTGTTAGAGCAATTCGGTCGACAGTTACAGAGTAGCAACCAGATGTTAATTAAATTCCTAAGTCATTAAAAATTTAATTTTCTCGCTACAAAATAACTAACATATCTACATATTTGTGATTTACATTTGTCTATTTGTTTAGTGGATATCCAGCATACTCATCTCCGTCATCTTGAGGTATTCTTTCTTCTTGTAAGCATGTTTCGTGAGTAGGAATTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGGCATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGGAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCATAATATTACCGAAAACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGTTGACACACTGCTTTGGGAAATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCTCAAAAACTGACGA ] [+] EMBL CD075175 [AAAATATATTCTTAAAGAATTTTGATTTCTTAAAATGTACAGAGATCTTTGGTTTGTCACATTAAAAGTCAAATGAATAATGATTTGTTAGAGCAATTCGGTCGACAGTTACAGAGTAGCAACCAGATGTTAATTAAATTCCTAAGTCATTAAAAATTTAATTTTCTCGCTACAAAATAACTAACATATCTACATATTTGTGATTTACATTTGTCTATTTGTTTAGTGGATATCCAGCATACTCATCTCCGTCATCTTGAGGTATTCTTTCTTCTTGTAAGCATGTTTCGTGAGTAGGAATTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGGCATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGGAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCATAATATTACCGAAAACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGTTGACACACTGCTTTGG ] [-] EMBL CD081343 [ AAGCATGTTTCGTGAGTAGGAATTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGGCATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGGAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCATAATATTACCGAAAACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGTTGACACACTGCTTTGGGAAATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCTCAAAAACTGACGAATCCAACCACCATGACCTACAATAAGAACATGTCCTGCATAAGTGGATATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGACGAAGAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAGGATCCAGAAGGAAGTTATGTGTTCGACNTTGCCATCTCGTGAGTACATTCTCTCCCTCGTGCCCTA] [-] EMBL CD135454 [ GGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGGCATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGGAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCGTAATATTACCGAAAACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGTTGACACACTGCTTTGGGAAATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCTCAAAAACTGACGAATCCAACCACCATGACCTAC ] consensusID : consensus_8072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CGCTTCCTCAATGTCGATGTGATTTTGGTGATTATTTCTTGTGATTTGTGTGGTTAGTAGATATTTTGTCTGAGTCGGTTCATTGTGCTTTCATATTATCTTTGTTTCCAGAATATGAAACAAGAAATCTTATATTTCTACTTGACGCTATTACGACAGTAAGAATCAGTCTAATAATGAACTATCTTCTAGCGGAGAAACAACTGAAAATAAAAACCAAGTGATTCAAGGTTACTTCTATCTTTTATTTAGATTTTGGCGTTTTAGGTCACTTGGATACCGNNNNNNNNNNNNNNNGACTTGAGCAAGCTAAGAATATTCGGACTCTCATTAACCAAAGCAAACCAGATATTATTATTTCAAGTGATCTAAAAAGAGCCAGATACACGGCATATGAGGTAACCGACCCGTCTGTTGTGGAACTGGAATCTCTTACTGGTCGTCCAAGATCTGAAGTTCAACAGTTCACAGAAATAAATTTCAAGAGGGGATATGAATGTGATGGCTGGCGAAACATTGGTGGAGAATGTACTCACGAGGCTCCATCAAGTGTGATTGTTTGTCTTTTACTTCCTATAATGGTTACAGATGGCNNNNNNNNNN] [+] EMBL CD080973 [CGCTTCCTCAATGTCGATGTGATTTTGGTGATTATTTCTTGTGATTTGTGTGGTTAGTAGATATTTTGTCTGAGTCGGTTCATTGTGCTTTCATATTATCTTTGTTTCCAGAATATGAAACAAGAAATCTTATATTTCTACTTGACGCTATTACGACAGTAAGAATCAGTCTAATAATGAACTATCTTCTAGCGGAGAAACAACTGAAAATAAAAACCAAGTGATTCAAGGTTACTTCTATCTTTTATTTAGATTTTGGCGTTTTAGGTCACTTGGATACCGNNNNNNNNNNNNNNNGACTTGAGCAAGCTAAGAATATTCGGACTCTCATTAACCAAAGCAAACCAGATATTATTATTTCAAGTGATCTAAAAAGAGCCAGATACACGGCATATGAGGTAACCGACCCGTCTGTTGTGGAACTGGAATCTCTTACTGGTCGTCCAAGATCTGAAGTTCAACAGTTCACAGAAATAAATTTCAAGAGGGGATATGAATGTGATGGCTGGCGAAACATTGGTGGAGAATGTACTCACGAGGCTCCATCAAGTGTGATTGTTTGTCTTTTACTTCCTATAATGGTTACAGATGGCNNNNNNNNNN] consensusID : consensus_8072#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [AAGAACATGTCCTGCATAAGTGGATATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGACGAAGAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAAGATCCAGAAGGAAGTTATGTGTTCGACTTGCCATCTCGTGAGTACATTCTCCACCAATGTTTCGCCAGCCATCACATTCATATCCCCTCTTGAAATTTATTTCTGTGAACTGTTGAACTTCAGATCTTGGACGACCAGTAAGAGATCCGAAGTTTCTTTCACGTATTCGTGATTCCAGTTCCACAACAGACGGGTCGGTTACCTCATATGCCGTGTATCTGGCTCTTTTTAGATCACTTGAAATAATAATATCTGGTTTGCTTTGGTTAATGAGAGTCCGAATATTCTTAGCTTGCTCAAGTCCAACTGCTGATAGATCGGTATCCAAGTGACTTGGTTTTTATTTTNG] [-] EMBL CD083734 [AAGAACATGTCCTGCATAAGTGGATATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGACGAAGAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAAGATCCAGAAGGAAGTTATGTGTTCGACTTGCCATCTCGTGAGTACATTCTCCACCAATGTTTCGCCAGCCATCACATTCATATCCCCTCTTGAAATTTATTTCTGTGAACTGTTGAACTTCAGATCTTGGACGACCAGTAAGAGATCCGAAGTTTCTTTCACGTATTCGTGATTCCAGTTCCACAACAGACGGGTCGGTTACCTCATATGCCGTGTATCTGGCTCTTTTTAGATCACTTGAAATAATAATATCTGGTTTGCTTTGGTTAATGAGAGTCCGAATATTCTTAGCTTGCTCAAGTCCAACTGCTGATAGATCGGTATCCAAGTGACTTGGTTTTTATTTTNG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8072#0 AAAATATATTCTTAAAGAATTTTGATTTCTTAAAATGTACAGAGATCTTTGGTTTGTCAC 60 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 ATTAAAAGTCAAATGAATAATGATTTGTTAGAGCAATTCGGTCGACAGTTACAGAGTAGC 120 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 AACCAGATGTTAATTAAATTCCTAAGTCATTAAAAATTTAATTTTCTCGCTACAAAATAA 180 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 CTAACATATCTACATATTTGTGATTTACATTTGTCTATTTGTTTAGTGGATATCCAGCAT 240 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 ACTCATCTCCGTCATCTTGAGGTATTCTTTCTTCTTGTAAGCATGTTTCGTGAGTAGGAA 300 consensus_8072#2 ------------------------------------------------------------ consensus_8072#1 ------------------------------------------------------------ consensus_8072#0 TTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGG 360 consensus_8072#2 ------------------------------------------------AAGAACATGTCC 12 consensus_8072#1 ------------------CGCTTCCTCAATGTCGATGTGATTTTGGTGATTATTTCTTGT 42 * * * consensus_8072#0 CATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGC-TAAATGAATATAG 419 consensus_8072#2 TGCATAAGTGGATATGGGCGATTCTG-CAGCTTTGGTATTTTCATT-TGGAAAAACATCA 70 consensus_8072#1 GATTTGTGTGGTTAGTAGATATTTTG----TCTGAGTCGGTTCATTGTGCTTTCATATTA 98 *** * * * * * * * * ** consensus_8072#0 GAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTC-ATAATATTACCGAA 478 consensus_8072#2 AAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAG---ACCCTATAATCGGA 127 consensus_8072#1 TCTTTGTTTCCAGAATATGAAACAAGAAATCTTATATTTCTACTTGACGCTATTACGACA 158 * * * * * * * *** * * consensus_8072#0 AACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTC 538 consensus_8072#2 AA---AGGGTCTTGACGAAGAACGTTGGTATGCTTCATGC---TTGTTTCTATAAG---- 177 consensus_8072#1 GT---AAGAATCAGTCTAATAATGAACTATCTTCTAGCGGAGAAACAACTGAAAAT---- 211 * * * ** * * * ** consensus_8072#0 AAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATC-ACCG 597 consensus_8072#2 ACGAGAACAAAGATCCAGAAGGAAGT-TATGTGTTCGACTTGCCATCTCGTGAGT-ACAT 235 consensus_8072#1 AAAAACCAAGTGATTCAAGGTTACTTCTATCT--TTTATTTAGATTTTGGCGTTTTAGGT 269 * * * ** * * ** * * * * * consensus_8072#0 AGTTGACACACTGCTTTGGGAA--ATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCT 655 consensus_8072#2 TCTCCAC-CAATGTTTCGCCAGCCATCACATTCATATCCCCTCTTGAAATTTAT---TTC 291 consensus_8072#1 CACTTGGATACCGNNNNNNNNNNNNNNNGACTTGAGCAAGCTAAGAATATTCGGACTCTC 329 * * * * consensus_8072#0 CAAAAACTGACGAATCCAACCACCATGACCTACAATAAGAACATGTCCTGCATAAGTGGA 715 consensus_8072#2 TGTGAACTGTTGAACTTCAGATCTTGGACGACCAGTAAGA----GATCCG---AAGTTTC 344 consensus_8072#1 ATTAACCAAAGCAAACCAGATATTATTATTTCAAGTGA-------TCTAAAAAGAGCCAG 382 * * ** * * * * ** consensus_8072#0 TATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAAT 775 consensus_8072#2 TTTCA-CGTATTCGTGATTCCAGT----TCCACAACAGACGGGTCGGTTACCTCATATGC 399 consensus_8072#1 ATACACGGCATATGAGGTAACCGACCCGTCTGTTGTGGAAC--TGGAATCTCTTACTGGT 440 * * * * ** * * ** * consensus_8072#0 TAGCTT---CCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGAC- 831 consensus_8072#2 CGTGTA---TCTGGCTCTTTTTAGATCACTTGAAATAATAATATCTGGTTTGCTTTGGT- 455 consensus_8072#1 CGTCCAAGATCTGAAGTTCAACAGTTCAC-AGAAATAAATTTCAAGAGGGGATATGAATG 499 * * **** ** * * * consensus_8072#0 GAA-GAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAGGATCCAGAAGG 890 consensus_8072#2 TAATGAGAGTCCGAATATTCTTAGCTTGCTCAAGTCCAACT-GCTGATAGATCGGTATCC 514 consensus_8072#1 TGATGGCTGGCGAAACATTGGTGGAGAATGTACTCACGAGGCTCCATCAAGTGTGATTGT 559 * * * * * * * * consensus_8072#0 AAGTTATGTGTTCGACNTTGCCATCTCGTGAGTACATTCTCTCCCTCGTGCCCTA 945 consensus_8072#2 AAGTGACTTGGTTTTTATTTTNG-------------------------------- 537 consensus_8072#1 TTGTCTTTTACTTCCTATAATGGTTACAGATGGCNNNNNNNNNN----------- 603 ** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||