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Schistosoma mansoni
cluster # 8072 cluster # 8072       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8072#0 length = 945 sequences # 4  
consensus_8072#1 length = 603 sequences # 1  
consensus_8072#2 length = 537 sequences # 1  

consensusID : consensus_8072#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 945
fasta sequence
                              [AAAATATATTCTTAAAGAATTTTGATTTCTTAAAATGTACAGAGATCTTTGGTTTGTCACATTAAAAGTCAAATGAATAATGATTTGTTAGAGCAATTCGGTCGACAGTTACAGAGTAGCAACCAGATGTTAATTAAATTCCTAAGTCATTAAAAATTTAATTTTCTCGCTACAAAATAACTAACATATCTACATATTTGTGATTTACATTTGTCTATTTGTTTAGTGGATATCCAGCATACTCATCTCCGTCATCTTGAGGTATTCTTTCTTCTTGTAAGCATGTTTCGTGAGTAGGAATTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGGCATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGGAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCATAATATTACCGAAAACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGTTGACACACTGCTTTGGGAAATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCTCAAAAACTGACGAATCCAACCACCATGACCTACAATAAGAACATGTCCTGCATAAGTGGATATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGACGAAGAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAGGATCCAGAAGGAAGTTATGTGTTCGACNTTGCCATCTCGTGAGTACATTCTCTCCCTCGTGCCCTA]

[+] EMBL CD074799             [AAAATATATTCTTAAAGAATTTTGATTTCTTAAAATGTACAGAGATCTTTGGTTTGTCACATTAAAAGTCAAATGAATAATGATTTGTTAGAGCAATTCGGTCGACAGTTACAGAGTAGCAACCAGATGTTAATTAAATTCCTAAGTCATTAAAAATTTAATTTTCTCGCTACAAAATAACTAACATATCTACATATTTGTGATTTACATTTGTCTATTTGTTTAGTGGATATCCAGCATACTCATCTCCGTCATCTTGAGGTATTCTTTCTTCTTGTAAGCATGTTTCGTGAGTAGGAATTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGGCATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGGAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCATAATATTACCGAAAACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGTTGACACACTGCTTTGGGAAATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCTCAAAAACTGACGA                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD075175             [AAAATATATTCTTAAAGAATTTTGATTTCTTAAAATGTACAGAGATCTTTGGTTTGTCACATTAAAAGTCAAATGAATAATGATTTGTTAGAGCAATTCGGTCGACAGTTACAGAGTAGCAACCAGATGTTAATTAAATTCCTAAGTCATTAAAAATTTAATTTTCTCGCTACAAAATAACTAACATATCTACATATTTGTGATTTACATTTGTCTATTTGTTTAGTGGATATCCAGCATACTCATCTCCGTCATCTTGAGGTATTCTTTCTTCTTGTAAGCATGTTTCGTGAGTAGGAATTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGGCATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGGAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCATAATATTACCGAAAACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGTTGACACACTGCTTTGG                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD081343             [                                                                                                                                                                                                                                                                                      AAGCATGTTTCGTGAGTAGGAATTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGGCATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGGAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCATAATATTACCGAAAACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGTTGACACACTGCTTTGGGAAATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCTCAAAAACTGACGAATCCAACCACCATGACCTACAATAAGAACATGTCCTGCATAAGTGGATATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGACGAAGAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAGGATCCAGAAGGAAGTTATGTGTTCGACNTTGCCATCTCGTGAGTACATTCTCTCCCTCGTGCCCTA]
[-] EMBL CD135454             [                                                                                                                                                                                                                                                                                                                           GGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGGCATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGGAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCGTAATATTACCGAAAACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGTTGACACACTGCTTTGGGAAATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCTCAAAAACTGACGAATCCAACCACCATGACCTAC                                                                                                                                                                                                                                                                 ]


>consensus_8072#0 AAAATATATTCTTAAAGAATTTTGATTTCTTAAAATGTACAGAGATCTTTGGTTTGTCAC ATTAAAAGTCAAATGAATAATGATTTGTTAGAGCAATTCGGTCGACAGTTACAGAGTAGC AACCAGATGTTAATTAAATTCCTAAGTCATTAAAAATTTAATTTTCTCGCTACAAAATAA CTAACATATCTACATATTTGTGATTTACATTTGTCTATTTGTTTAGTGGATATCCAGCAT ACTCATCTCCGTCATCTTGAGGTATTCTTTCTTCTTGTAAGCATGTTTCGTGAGTAGGAA TTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGG CATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGG AACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCATAATATTACCGAAAA CAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAA GACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGT TGACACACTGCTTTGGGAAATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCTCAAAA ACTGACGAATCCAACCACCATGACCTACAATAAGAACATGTCCTGCATAAGTGGATATGG GCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAATTAGCT TCCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGACGAAGAACGT TGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAGGATCCAGAAGGAAGTTATGTG TTCGACNTTGCCATCTCGTGAGTACATTCTCTCCCTCGTGCCCTA



consensusID : consensus_8072#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence
                              [CGCTTCCTCAATGTCGATGTGATTTTGGTGATTATTTCTTGTGATTTGTGTGGTTAGTAGATATTTTGTCTGAGTCGGTTCATTGTGCTTTCATATTATCTTTGTTTCCAGAATATGAAACAAGAAATCTTATATTTCTACTTGACGCTATTACGACAGTAAGAATCAGTCTAATAATGAACTATCTTCTAGCGGAGAAACAACTGAAAATAAAAACCAAGTGATTCAAGGTTACTTCTATCTTTTATTTAGATTTTGGCGTTTTAGGTCACTTGGATACCGNNNNNNNNNNNNNNNGACTTGAGCAAGCTAAGAATATTCGGACTCTCATTAACCAAAGCAAACCAGATATTATTATTTCAAGTGATCTAAAAAGAGCCAGATACACGGCATATGAGGTAACCGACCCGTCTGTTGTGGAACTGGAATCTCTTACTGGTCGTCCAAGATCTGAAGTTCAACAGTTCACAGAAATAAATTTCAAGAGGGGATATGAATGTGATGGCTGGCGAAACATTGGTGGAGAATGTACTCACGAGGCTCCATCAAGTGTGATTGTTTGTCTTTTACTTCCTATAATGGTTACAGATGGCNNNNNNNNNN]

[+] EMBL CD080973             [CGCTTCCTCAATGTCGATGTGATTTTGGTGATTATTTCTTGTGATTTGTGTGGTTAGTAGATATTTTGTCTGAGTCGGTTCATTGTGCTTTCATATTATCTTTGTTTCCAGAATATGAAACAAGAAATCTTATATTTCTACTTGACGCTATTACGACAGTAAGAATCAGTCTAATAATGAACTATCTTCTAGCGGAGAAACAACTGAAAATAAAAACCAAGTGATTCAAGGTTACTTCTATCTTTTATTTAGATTTTGGCGTTTTAGGTCACTTGGATACCGNNNNNNNNNNNNNNNGACTTGAGCAAGCTAAGAATATTCGGACTCTCATTAACCAAAGCAAACCAGATATTATTATTTCAAGTGATCTAAAAAGAGCCAGATACACGGCATATGAGGTAACCGACCCGTCTGTTGTGGAACTGGAATCTCTTACTGGTCGTCCAAGATCTGAAGTTCAACAGTTCACAGAAATAAATTTCAAGAGGGGATATGAATGTGATGGCTGGCGAAACATTGGTGGAGAATGTACTCACGAGGCTCCATCAAGTGTGATTGTTTGTCTTTTACTTCCTATAATGGTTACAGATGGCNNNNNNNNNN]


>consensus_8072#1 CGCTTCCTCAATGTCGATGTGATTTTGGTGATTATTTCTTGTGATTTGTGTGGTTAGTAG ATATTTTGTCTGAGTCGGTTCATTGTGCTTTCATATTATCTTTGTTTCCAGAATATGAAA CAAGAAATCTTATATTTCTACTTGACGCTATTACGACAGTAAGAATCAGTCTAATAATGA ACTATCTTCTAGCGGAGAAACAACTGAAAATAAAAACCAAGTGATTCAAGGTTACTTCTA TCTTTTATTTAGATTTTGGCGTTTTAGGTCACTTGGATACCGNNNNNNNNNNNNNNNGAC TTGAGCAAGCTAAGAATATTCGGACTCTCATTAACCAAAGCAAACCAGATATTATTATTT CAAGTGATCTAAAAAGAGCCAGATACACGGCATATGAGGTAACCGACCCGTCTGTTGTGG AACTGGAATCTCTTACTGGTCGTCCAAGATCTGAAGTTCAACAGTTCACAGAAATAAATT TCAAGAGGGGATATGAATGTGATGGCTGGCGAAACATTGGTGGAGAATGTACTCACGAGG CTCCATCAAGTGTGATTGTTTGTCTTTTACTTCCTATAATGGTTACAGATGGCNNNNNNN NNN



consensusID : consensus_8072#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence
                              [AAGAACATGTCCTGCATAAGTGGATATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGACGAAGAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAAGATCCAGAAGGAAGTTATGTGTTCGACTTGCCATCTCGTGAGTACATTCTCCACCAATGTTTCGCCAGCCATCACATTCATATCCCCTCTTGAAATTTATTTCTGTGAACTGTTGAACTTCAGATCTTGGACGACCAGTAAGAGATCCGAAGTTTCTTTCACGTATTCGTGATTCCAGTTCCACAACAGACGGGTCGGTTACCTCATATGCCGTGTATCTGGCTCTTTTTAGATCACTTGAAATAATAATATCTGGTTTGCTTTGGTTAATGAGAGTCCGAATATTCTTAGCTTGCTCAAGTCCAACTGCTGATAGATCGGTATCCAAGTGACTTGGTTTTTATTTTNG]

[-] EMBL CD083734             [AAGAACATGTCCTGCATAAGTGGATATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGACGAAGAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAAGATCCAGAAGGAAGTTATGTGTTCGACTTGCCATCTCGTGAGTACATTCTCCACCAATGTTTCGCCAGCCATCACATTCATATCCCCTCTTGAAATTTATTTCTGTGAACTGTTGAACTTCAGATCTTGGACGACCAGTAAGAGATCCGAAGTTTCTTTCACGTATTCGTGATTCCAGTTCCACAACAGACGGGTCGGTTACCTCATATGCCGTGTATCTGGCTCTTTTTAGATCACTTGAAATAATAATATCTGGTTTGCTTTGGTTAATGAGAGTCCGAATATTCTTAGCTTGCTCAAGTCCAACTGCTGATAGATCGGTATCCAAGTGACTTGGTTTTTATTTTNG]


>consensus_8072#2 AAGAACATGTCCTGCATAAGTGGATATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGG AAAAACATCAAAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAGACCCTAT AATCGGAAAAGGGTCTTGACGAAGAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACG AGAACAAAGATCCAGAAGGAAGTTATGTGTTCGACTTGCCATCTCGTGAGTACATTCTCC ACCAATGTTTCGCCAGCCATCACATTCATATCCCCTCTTGAAATTTATTTCTGTGAACTG TTGAACTTCAGATCTTGGACGACCAGTAAGAGATCCGAAGTTTCTTTCACGTATTCGTGA TTCCAGTTCCACAACAGACGGGTCGGTTACCTCATATGCCGTGTATCTGGCTCTTTTTAG ATCACTTGAAATAATAATATCTGGTTTGCTTTGGTTAATGAGAGTCCGAATATTCTTAGC TTGCTCAAGTCCAACTGCTGATAGATCGGTATCCAAGTGACTTGGTTTTTATTTTNG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8072#0      AAAATATATTCTTAAAGAATTTTGATTTCTTAAAATGTACAGAGATCTTTGGTTTGTCAC 60
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      ATTAAAAGTCAAATGAATAATGATTTGTTAGAGCAATTCGGTCGACAGTTACAGAGTAGC 120
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      AACCAGATGTTAATTAAATTCCTAAGTCATTAAAAATTTAATTTTCTCGCTACAAAATAA 180
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      CTAACATATCTACATATTTGTGATTTACATTTGTCTATTTGTTTAGTGGATATCCAGCAT 240
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      ACTCATCTCCGTCATCTTGAGGTATTCTTTCTTCTTGTAAGCATGTTTCGTGAGTAGGAA 300
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      TTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGG 360
consensus_8072#2      ------------------------------------------------AAGAACATGTCC 12
consensus_8072#1      ------------------CGCTTCCTCAATGTCGATGTGATTTTGGTGATTATTTCTTGT 42
                                                                      *  *     *  

consensus_8072#0      CATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGC-TAAATGAATATAG 419
consensus_8072#2      TGCATAAGTGGATATGGGCGATTCTG-CAGCTTTGGTATTTTCATT-TGGAAAAACATCA 70
consensus_8072#1      GATTTGTGTGGTTAGTAGATATTTTG----TCTGAGTCGGTTCATTGTGCTTTCATATTA 98
                              ***  *       *  *           *    * *   *      * **  

consensus_8072#0      GAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTC-ATAATATTACCGAA 478
consensus_8072#2      AAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAG---ACCCTATAATCGGA 127
consensus_8072#1      TCTTTGTTTCCAGAATATGAAACAAGAAATCTTATATTTCTACTTGACGCTATTACGACA 158
                            *               *   *     *  *     *    *   *** *    *

consensus_8072#0      AACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTC 538
consensus_8072#2      AA---AGGGTCTTGACGAAGAACGTTGGTATGCTTCATGC---TTGTTTCTATAAG---- 177
consensus_8072#1      GT---AAGAATCAGTCTAATAATGAACTATCTTCTAGCGGAGAAACAACTGAAAAT---- 211
                                   * *  * **            *   *            * **     

consensus_8072#0      AAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATC-ACCG 597
consensus_8072#2      ACGAGAACAAAGATCCAGAAGGAAGT-TATGTGTTCGACTTGCCATCTCGTGAGT-ACAT 235
consensus_8072#1      AAAAACCAAGTGATTCAAGGTTACTTCTATCT--TTTATTTAGATTTTGGCGTTTTAGGT 269
                      *  *    *   **  *     *    **  *     * *       *        *   

consensus_8072#0      AGTTGACACACTGCTTTGGGAA--ATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCT 655
consensus_8072#2      TCTCCAC-CAATGTTTCGCCAGCCATCACATTCATATCCCCTCTTGAAATTTAT---TTC 291
consensus_8072#1      CACTTGGATACCGNNNNNNNNNNNNNNNGACTTGAGCAAGCTAAGAATATTCGGACTCTC 329
                               *  *                  *              *             

consensus_8072#0      CAAAAACTGACGAATCCAACCACCATGACCTACAATAAGAACATGTCCTGCATAAGTGGA 715
consensus_8072#2      TGTGAACTGTTGAACTTCAGATCTTGGACGACCAGTAAGA----GATCCG---AAGTTTC 344
consensus_8072#1      ATTAACCAAAGCAAACCAGATATTATTATTTCAAGTGA-------TCTAAAAAGAGCCAG 382
                          * *     **             *     * * *                **    

consensus_8072#0      TATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAAT 775
consensus_8072#2      TTTCA-CGTATTCGTGATTCCAGT----TCCACAACAGACGGGTCGGTTACCTCATATGC 399
consensus_8072#1      ATACACGGCATATGAGGTAACCGACCCGTCTGTTGTGGAAC--TGGAATCTCTTACTGGT 440
                             *  *  *        *     **        *    *       ** *     

consensus_8072#0      TAGCTT---CCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGAC- 831
consensus_8072#2      CGTGTA---TCTGGCTCTTTTTAGATCACTTGAAATAATAATATCTGGTTTGCTTTGGT- 455
consensus_8072#1      CGTCCAAGATCTGAAGTTCAACAGTTCAC-AGAAATAAATTTCAAGAGGGGATATGAATG 499
                                *           *  ****  **    *   *            *     

consensus_8072#0      GAA-GAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAGGATCCAGAAGG 890
consensus_8072#2      TAATGAGAGTCCGAATATTCTTAGCTTGCTCAAGTCCAACT-GCTGATAGATCGGTATCC 514
consensus_8072#1      TGATGGCTGGCGAAACATTGGTGGAGAATGTACTCACGAGGCTCCATCAAGTGTGATTGT 559
                        * *   *     *   *    *              *            *        

consensus_8072#0      AAGTTATGTGTTCGACNTTGCCATCTCGTGAGTACATTCTCTCCCTCGTGCCCTA 945
consensus_8072#2      AAGTGACTTGGTTTTTATTTTNG-------------------------------- 537
consensus_8072#1      TTGTCTTTTACTTCCTATAATGGTTACAGATGGCNNNNNNNNNN----------- 603
                        **    *  *     *                                     




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)