cluster # 8073

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Schistosoma mansoni
cluster # 8073 cluster # 8073 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8073#0 length = 812 sequences # 5

consensus_8073#1 length = 388 sequences # 1

consensusID : consensus_8073#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 812
fasta sequence

                              [TGGACGACTGTCCGCCGAAGACAGCAATACTCCGTCCGCGAATTTCGGTTGTTCTATGCGTGAACTGCAGGGACTCATGCAGTTGCGTGGAGCTGAAGCAGTAGAAGTTGTGAATAAAAGATTTGATGGAGCTAGTGGTTTGTGTCAGCGTCTTAAAACTTCCCCAACTCAAGGATTATCAAGTCATGATTTGGTAAGACGTCGTGAAGTCTTCGGGACCAATATAATACCCCCAACACCTCCAAAAAGCTTTTTTCAACTTATGTGGGAAGCTTTACAGGATGTAACTTTGATTGATTTAATGGTGGCTGCAGCTGTATCACTTTTACTGGCATTATATTCTAAATATTTTGGTGGAGAGCATAGTTCCGGTGATGAGACTGAAGGTGAAGTTAGTTGGATCGAAGGTGTTGCTATACTTTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACAATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGGTGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATATGGTGATTTACTACCTGCTGATGGAGTAGTTCTTCAAAGTAATGATTTAAAGGTTGATGAAAGCTCATTAACTGGTGAACCGGATCAAGTGAAAAAAGGTGAAAACATTGATCCAATGTTATTATCAGGTACACATGTTATGGAAGGTTCTGGTAAAATGGTTGTTACGGCTGTTGGAGTGAATTCACAGGCCGGTATTATATTTGCATTGT]

[-] EMBL CD159903             [TGGACGACTGTCCGCCGAAGACAGCAATACTCCGTCCGCGAATTTCGGTTGTTCTATGCGTGAACTGCAGGGACTCATGCAGTTGCGTGGAGCTGAAGCAGTAGAAGTTGTGAATAAAAGATTTGATGGAGCTAGTGGTTTGTGTCAGCGTCTTAAAACTTCCCCAACTCAAGGATTATCAAGTCATGATTTGGTAAGACGTCGTGAAGTCTTCGGGACCAATATAATACCCCCAACACCTCCAAAAAGCTTTTTTCAACTTATGTGGGAAGCTTTACAGGATGTAACTTTGATTGATTTAATGGTGGCTGCAGCTGTATCACTTTTACTGGCATTATATTCTAAATATTTTGGTGGAGAGCATAGTTCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD112757             [                                                                                                                                                                                                                           CAATATAATACCCCCAACACCTCCAAAAAGCTTTTTTCAACTTATGTGGGAAGCTTTACAGGATGTAACTTTGATTGTTTTAATGGTGGCTGCAGCTGTATCACTTTTACTGGCATTATATTCTAAATATTTTGGTGGAGAGCATAGTTCCGGTGATGAGACTGAAGGTGAAGTTAGTTGGATCGAAGGTGTTGCTATACTTTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACAATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGGTGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATATGGTGATTTACTACCTGCTGATGGAGTAGTTCTTCAAAGTAATGATTT AAGGTTGATGAAAGCTCATTAACTGGTGAAC                                                                                                                                    ]
[-] EMBL CD171134             [                                                                                                                                                                                                                                                                                                                                                                                              GAAGGTGAAGTTAGTTGGATCGAAGGTGTTGCTATACTTTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACAATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGGTGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATATGGTGATTTACTACCTGCTGATGGAGTAGTTCTTCAAAGTAATGATTTAAAGGTTGATGAAAGCTCATTAACTGGTGAACCGGATCAAGTGAAAAAAGGTGAAAACATTGATCCAATGTTATTATCAGGTACACATGTTATGGAAGGTTCTGGTAAAATGGTTGTTACGGCTGTTGGAGTGAATTCACAGGCCGGTATTATATTTACATTGT]
[-] EMBL CD185621             [                                                                                                                                                                                                                                                                                                                                                                                                                         GTTGCTATACTTTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACAATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGGTGATATCACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATATGGTGATTTACTACCTGCTGATGGAGTAGTTCTTCAAAGTAATGATTTAAAGGTTGATGAAAGCTCATTAACTGGTGAACCGGATCAAGTGAAAAAAGGTGAAAACATTGATCCAATGTTATTATCAGGTACACATGTTATGGAAGGTTCTGGTAAAATGGTTGTTACGGCTGTTGGAGTGAATTCACAGGCCGGTATTATATTTGCAT   ]
[-] EMBL CD185641             [                                                                                                                                                                                                                                                                                                                                                                                                                         GTTGCTATACTTTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACAATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGGTGATATCACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATATGGTGATTTACTACCTGCTGATGGAGTAGTTCTTCAAAGTAATGATTTAAAGGTTGATGAAAGCTCATTAACTGGTGAACCGGATCAAGTGAAAAAAGGTGAAAACATTGATCCAATGTTATTATCAGGTACACATGTTATGGAAGGTTCTGGTAAAATGGTTGTTACGGCTGTTGGAGTGAATTCACAGGCCGGTATTATATTTGCAT   ]




>consensus_8073#0
TGGACGACTGTCCGCCGAAGACAGCAATACTCCGTCCGCGAATTTCGGTTGTTCTATGCG
TGAACTGCAGGGACTCATGCAGTTGCGTGGAGCTGAAGCAGTAGAAGTTGTGAATAAAAG
ATTTGATGGAGCTAGTGGTTTGTGTCAGCGTCTTAAAACTTCCCCAACTCAAGGATTATC
AAGTCATGATTTGGTAAGACGTCGTGAAGTCTTCGGGACCAATATAATACCCCCAACACC
TCCAAAAAGCTTTTTTCAACTTATGTGGGAAGCTTTACAGGATGTAACTTTGATTGATTT
AATGGTGGCTGCAGCTGTATCACTTTTACTGGCATTATATTCTAAATATTTTGGTGGAGA
GCATAGTTCCGGTGATGAGACTGAAGGTGAAGTTAGTTGGATCGAAGGTGTTGCTATACT
TTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACA
ATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGG
TGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATA
TGGTGATTTACTACCTGCTGATGGAGTAGTTCTTCAAAGTAATGATTTAAAGGTTGATGA
AAGCTCATTAACTGGTGAACCGGATCAAGTGAAAAAAGGTGAAAACATTGATCCAATGTT
ATTATCAGGTACACATGTTATGGAAGGTTCTGGTAAAATGGTTGTTACGGCTGTTGGAGT
GAATTCACAGGCCGGTATTATATTTGCATTGT

consensusID : consensus_8073#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [TCATTTATAATGACATTATCTAGTTTATTTTCTTCTATTTAATGATTTTCCTTTTTTCACAAAGATTTTGGTGGAGAGCATAGTTCCGGTGATGAGACTGAAGGTGAAGTTAGTTGGATCGAAGGTGTTGCTATACTTTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACAATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGGTGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATATGGTAAGTGATTTTTTCTATAATTTTGCTTGTCCAAAAAATAACTCTATTAAATCTTCCTACTTTTATTTT]

[+] EMBL CD118242             [TCATTTATAATGACATTATCTAGTTTATTTTCTTCTATTTAATGATTTTCCTTTTTTCACAAAGATTTTGGTGGAGAGCATAGTTCCGGTGATGAGACTGAAGGTGAAGTTAGTTGGATCGAAGGTGTTGCTATACTTTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACAATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGGTGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATATGGTAAGTGATTTTTTCTATAATTTTGCTTGTCCAAAAAATAACTCTATTAAATCTTCCTACTTTTATTTT]




>consensus_8073#1
TCATTTATAATGACATTATCTAGTTTATTTTCTTCTATTTAATGATTTTCCTTTTTTCAC
AAAGATTTTGGTGGAGAGCATAGTTCCGGTGATGAGACTGAAGGTGAAGTTAGTTGGATC
GAAGGTGTTGCTATACTTTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGAT
TGGCAGAAAGAAAGACAATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATG
TCTGTTTTACGAGATGGTGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGAT
ATATGTTTAGTGAAATATGGTAAGTGATTTTTTCTATAATTTTGCTTGTCCAAAAAATAA
CTCTATTAAATCTTCCTACTTTTATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8073#0      TGGACGACTGTCCGCCGAAGACAGCAATACTCCGTCCGCGAATTTCGGTTGTTCTATGCG 60
consensus_8073#1      ------------------------------------------------------------
                                                                                  

consensus_8073#0      TGAACTGCAGGGACTCATGCAGTTGCGTGGAGCTGAAGCAGTAGAAGTTGTGAATAAAAG 120
consensus_8073#1      ------------------------------------------------------------
                                                                                  

consensus_8073#0      ATTTGATGGAGCTAGTGGTTTGTGTCAGCGTCTTAAAACTTCCCCAACTCAAGGATTATC 180
consensus_8073#1      ------------------------------------------------------------
                                                                                  

consensus_8073#0      AAGTCATGATTTGGTAAGACGTCGTGAAGTCTTCGGGACCAATATAATACCCCCAACACC 240
consensus_8073#1      ------------------------------------------------------------
                                                                                  

consensus_8073#0      TCCAAAAAGCTTTTTTCAACTTATGTGGGAAGCTTTACAGGATGTAACTTTGATTGATTT 300
consensus_8073#1      ----------------------------------TCATTTATAATGACATTATCTAGTTT 26
                                                        * *       * ** **   *  ***

consensus_8073#0      AATGGTGGCTGCAGCTGTATCACTTTTACTGGCATTATATTCTAAATATTTTGGTGGAGA 360
consensus_8073#1      ATTT---TCTTCTATTTAATGATTTT------CCTTTTTTCACAAAGATTTTGGTGGAGA 77
                      * *     ** *   *  ** * ***      * ** * *   *** *************

consensus_8073#0      GCATAGTTCCGGTGATGAGACTGAAGGTGAAGTTAGTTGGATCGAAGGTGTTGCTATACT 420
consensus_8073#1      GCATAGTTCCGGTGATGAGACTGAAGGTGAAGTTAGTTGGATCGAAGGTGTTGCTATACT 137
                      ************************************************************

consensus_8073#0      TTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACA 480
consensus_8073#1      TTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACA 197
                      ************************************************************

consensus_8073#0      ATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGG 540
consensus_8073#1      ATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGG 257
                      ************************************************************

consensus_8073#0      TGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATA 600
consensus_8073#1      TGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATA 317
                      ************************************************************

consensus_8073#0      TGGTGATTTACTACCTGCTGATGGAGTAGTTCTTCAAAGTAATGATTTAA--AGGTTGAT 658
consensus_8073#1      TGGTAAGTGATT--TTTTCTATAATTTTGCTTGTCCAAAAAATAACTCTATTAAATCTTC 375
                      **** * * * *   *    **    * * *  ** **  *** * *  *  *  *    

consensus_8073#0      GAAAGCTCATTAACTGGTGAACCGGATCAAGTGAAAAAAGGTGAAAACATTGATCCAATG 718
consensus_8073#1      CTACTTTTATTTT----------------------------------------------- 388
                        *   * ***                                                 

consensus_8073#0      TTATTATCAGGTACACATGTTATGGAAGGTTCTGGTAAAATGGTTGTTACGGCTGTTGGA 778
consensus_8073#1      ------------------------------------------------------------
                                                                                  

consensus_8073#0      GTGAATTCACAGGCCGGTATTATATTTGCATTGT 812
consensus_8073#1      ----------------------------------