These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 707 fasta sequence [CTGTCACATGAGGCTACTCGTATGTCTTCAACAGGTTTAAAAGGTAGAATACAAGTTACTGAGGCTGTTGCTAAACGCCTAGAATCACGTTATATATTTGAATACCGTGGTGAAGTGTTTGTCAAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTAAGACGAAGGGATGATTATCGAGATAATTTCACTGAAATGTATATTGTCTGTTCGTTTGTGTTACTACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTAGAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTAACTGCACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTTTGTTATATTTCTTCTTCGCTTAATCATAATTTTTCAATAAACATAAGAATACTTTCGAGAAATAATCATATATTCAACATATTAGTTTACACCTGCAATCATCATTTTTCTGTCTTTGCCTTCCTTTATTATCGTCTTTCTACACAGTGATTATTATTGGTGTCATTATCGGGTTGGCTTTCATTTT-CTCATTTCAAACAAAC-TTCATCTACTGGGCATTTGTCCTAGACATCCATCGTCAATATTCTATTGGTACATTTAGAAATAATAATATAAATGTATTAAATTCTGTGTCTTTATAT] [+] EMBL CD094397 [CTGTCACATGAGGCTACTCGTATGTCTTCAACAGGTTTAAAAGGTAGAATACAAGTTACTGAGGCTGTTGCTAAACGCCTAGAATCACGTTATATATTTGAATACCGTGGTGAAGTGTTTGTCAAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTAAGACGAAGGGATGATTATCGAGATAATTTCACTGAAATGTATATTGTCTGTTCGTTTGTGTTACTACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTAGAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTAACTGCACAAAAAAAATCCCTTAATGGATCTTTACATATACACATGTTTGTTATATTTCTTCTTCGCTTAATCATAATTTTTCAATAAACATAAGAATACTTTCGAGAAAT ATCATATATTCAACATATTAGTTTACACCTGCAATCATCATTTTTCTGTCTTTGCCCTTCTTTATTATCGNCTTTCTACACAGTGATTATTATTGGTGTCATTATCGGGTTGGCTTTCATTTT CTCATTTCAAACAAAC TTCATCTACTGGGCATT ] [-] EMBL CD074797 [ TTTGAATACCGTGGTGAAGTGTTTGTCAAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTAAGACGAAGGGATGATTATAGAGATAATTTCACTGAAATGTATATTGTCTGTTCGTTTGTGTTACAACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTAGAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTAACTGCACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTTTGTTATATTTCTTCTTCGCTTAATCATAATTTTTCAATAAACATAAGAATACTTTCCAGAAATAATCATATATTCAACATATTAGTTTACACCTGCAATCATCATTTTTCTGTCTTTGCCTTCCTTTATAATCGTCTTTCTACACAGTGATTATTATTGTTGTCATTATC GGTTTGCTTTCATTTTCCTCATTTCAAACAAACTTTCATTTACTGTGCATTTGTCCTAGACATCCATCGTCAATATTCTATTGGTACATTTAGAAATAATAATATAAATGTATTAAATTCTGTGTCTTTATAT] [+] EMBL CD178879 [ AAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTAAGACGAAGGGATGATTATCGAGATAATTTCACTGAAATGTATATTGTCTGTTCGTTTGTGTTACTACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTAGAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTAACTGCACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTTTGTTATATTTCTTCTTCGCTTAATCATAATTTTTCAATAAACATAAGAATACTTTCGAGAAATAATCATATATTCAACATATTAGTTTACACCTGCAATCATCATCTT ] [-] EMBL CD122157 [ ATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTAAGACGAAGGGATGATTATCGAGATAATTTCACTGAAATGTATATTGTCTGTTCGTTTGTGTTACTACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTAGAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTAACTGCACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTTTGTTATATTTCTTCTTCGCTTAATCATAATTTTTCAATAAACATAAGAATACTTTCGAGAAATAATCATATATTCAACATATTAGTTTACACCTGCAATCATCA ] [-] EMBL CD187101 [ GATTATCGAGATAATTTCACTGAAATGTATATTGTCTGTTCGTTTGTGTTACTACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTAGAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTAACTGCACAAAAAAAATCCCTTAATGGATCTTTACATATACACATGTTTGTTATATTTCTTCTTCGCTTAATCATAATTTTTCAATAAACATAAGAATACTTTCGAGAAATAATCATATATTCAACATATTAGTTTACACCTGCAATCATCATTTTTCTGTCTTTGCCTTCCTTTATTATCGT ] consensusID : consensus_8075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [CCTCCAGGCCAANAATTCGGCACGAGGCAGATGAACATTTGTGGGCACTGCTTGATTTTGCTTTGGATTCGCCAAATGTTCAATTTTCAATTTGAACTAAAAGTTGGTTATAATATTGGTGAAGTGACAGCTGGTGTTATTGGAACTACAAAACTATTATATGATATATGGGGTGATACTGTCAATGTGGCTAGTNNNNNNNNNNNNNNNNNNNNNNNNGGTAGAATACAAGTTACTGATGCTGTTGCTAAACGCCTAGAATCACGTTATATATTTGAATACCGTGGTGAAGTGTTTGTCAAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTNNNNNNNNNNNNNNNNNNNNGAGATAATTTCACTGAAATGTATATTGGCTGTTCGTTTGTGTTACTACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTACAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTNNNGGCACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTATGATATATTTCTTCTTCGCTTAATCATAA] [+] EMBL CD080971 [CCTCCAGGCCAANAATTCGGCACGAGGCAGATGAACATTTGTGGGCACTGCTTGATTTTGCTTTGGATTCGCCAAATGTTCAATTTTCAATTTGAACTAAAAGTTGGTTATAATATTGGTGAAGTGACAGCTGGTGTTATTGGAACTACAAAACTATTATATGATATATGGGGTGATACTGTCAATGTGGCTAGTNNNNNNNNNNNNNNNNNNNNNNNNGGTAGAATACAAGTTACTGATGCTGTTGCTAAACGCCTAGAATCACGTTATATATTTGAATACCGTGGTGAAGTGTTTGTCAAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTNNNNNNNNNNNNNNNNNNNNGAGATAATTTCACTGAAATGTATATTGGCTGTTCGTTTGTGTTACTACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTACAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTNNNGGCACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTATGATATATTTCTTCTTCGCTTAATCATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8075#0 ------------------------------------------------------------ consensus_8075#1 CCTCCAGGCCAANAATTCGGCACGAGGCAGATGAACATTTGTGGGCACTGCTTGATTTTG 60 consensus_8075#0 ------------------------------------------------------------ consensus_8075#1 CTTTGGATTCGCCAAATGTTCAATTTTCAATTTGAACTAAAAGTTGGTTATAATATTGGT 120 consensus_8075#0 ----------------------------------------------------------CT 2 consensus_8075#1 GAAGTGACAGCTGGTGTTATTGGAACTACAAAACTATTATATGATATATGGGGTGATACT 180 ** consensus_8075#0 GTCACATGAGGCTACTCGTATGTCTTCAACAGGTTTAAAAGGTAGAATACAAGTTACTGA 62 consensus_8075#1 GTCA-ATGTGGCTAGTNNNNNNNNNNNNNNNNNNNNNNNNGGTAGAATACAAGTTACTGA 239 **** *** ***** * ******************** consensus_8075#0 GGCTGTTGCTAAACGCCTAGAATCACGTTATATATTTGAATACCGTGGTGAAGTGTTTGT 122 consensus_8075#1 TGCTGTTGCTAAACGCCTAGAATCACGTTATATATTTGAATACCGTGGTGAAGTGTTTGT 299 *********************************************************** consensus_8075#0 CAAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTAAGACGA 182 consensus_8075#1 CAAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTNNNNNNN 359 ***************************************************** consensus_8075#0 AGGGATGATTATCGAGATAATTTCACTGAAATGTATATTGTCTGTTCGTTTGTGTTACTA 242 consensus_8075#1 NNNNNNNNNNNNNGAGATAATTTCACTGAAATGTATATTGGCTGTTCGTTTGTGTTACTA 419 *************************** ******************* consensus_8075#0 CTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACT 302 consensus_8075#1 CTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACT 479 ************************************************************ consensus_8075#0 TGATCAATAGAACAATTTAGAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTAACTG 362 consensus_8075#1 TGATCAATAGAACAATTTACAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTNNNGG 539 ******************* *********************************** * consensus_8075#0 CACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTTTGTTATATTTCTTCTTC 422 consensus_8075#1 CACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTATGATATATTTCTTCTTC 599 ****************************************** ** ************** consensus_8075#0 GCTTAATCATAATTTTTCAATAAACATAAGAATACTTTCGAGAAATAATCATATATTCAA 482 consensus_8075#1 GCTTAATCATAA------------------------------------------------ 611 ************ consensus_8075#0 CATATTAGTTTACACCTGCAATCATCATTTTTCTGTCTTTGCCTTCCTTTATTATCGTCT 542 consensus_8075#1 ------------------------------------------------------------ consensus_8075#0 TTCTACACAGTGATTATTATTGGTGTCATTATCGGGTTGGCTTTCATTTTCTCATTTCAA 602 consensus_8075#1 ------------------------------------------------------------ consensus_8075#0 ACAAACTTCATCTACTGGGCATTTGTCCTAGACATCCATCGTCAATATTCTATTGGTACA 662 consensus_8075#1 ------------------------------------------------------------ consensus_8075#0 TTTAGAAATAATAATATAAATGTATTAAATTCTGTGTCTTTATAT 707 consensus_8075#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||