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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8085#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 624 fasta sequence
[TATGGACAACTTTTATTATAACCTTTCGGAATTATAATACAGAAATTAATAACATAAGTTTAAATAAACAAAACCCACAGCCAGTAAGATGCTTTATACACAAACTCAAAGGGTCAATATGTACATAAAGAAAATCTGAAATGTGATTAAACTAAATGAATTTGGTGATTATATGACGGAAATAATATCACAAAGGGCAAAAAGAAAATGCGACCATACTTATGGAGAACGAGAACTACGTTAAAGAAGAACAAAATTAACTCAAAAATATCTGAAAGTTTGATTTTGAAAGTATAGGAAATAAACGTCTAAAAAGTACCGGAAGTATTTCAGGTAACAGAAGAAATATAGGCGCAGTTTGATAATTTACAGAAGTGATGTGAAAACGGCATCATCAACAACACAACCTTAGAACATATGTACGAAATATTTGAAATTAAAGCAAATATCTATCAATTCATCCACTTTCGACAATTGATTGAACCGCAAAGACATGGAATCCGATCCCAACGATCTTCTTCTAGGTCAAATTTGTAGTCATACGTCAATTCATCACCCTTCTCGATATTCTTACTAGCAATTATCACTATATGGTTAGAATTATCACAGTGGAGTATCTCTGCA]
[+] EMBL CD074805 [TATGGACAACTTTTATTATAACCTTTCGGAATTATAATACAGAAATTAATAACATAAGTTTAAATAAACAAAACCCACAGCCAGTAAGATGCTTTATACACAAACTCAAAGGGTCAATATGTACATAAAGAAAATCTGAAATGTGATTAAACTAAATGAATTTGGTGATTATATGACGGAAATAATATCACAAAGGGCAAAAAGAAAATGCGACCATACTTATGGAGAACGAGAACTACGTTAAAGAAGAACAAAATTAACTCAAAAATATCTGAAAGTTTGATTTTGAAAGTATAGGAAATAAACGTCTAAAAAGTACCGGAAGTATTTCAGGTAACAGAAGAAATATAGGCGCAGTTTGATAATTTACAGAAGTGATGTGAAAACGGCATCATCAACAACACAACCTTAGAACATATGTACGAAATATTTGAAATTAAAGCAAATATCTATCAATTCATCCACTTTCGACAATTGATTGAACCGCAAAGACATGGAATCCGATCCCAACGATCTTCTTCTAGGTCAAATTTGTAGTCATACGTCAATTCATCACCCTTCTCGATATTCTTACTAGCAATTATCACTATATGGTTAGAATTATCACAGTGGAGTATCTCTGCA]
[-] EMBL CD157910 [ ACGAGAACTACGTTAAAGAAGAACAAAATTAACTCAAAAATATCTGAAAGTTTGATTTTTAAAGTATAGGAAATAAACGTCTAAAAAGTACCGGAAGTATTTCAGGTAACAGAAGAAATATAGGCGCAGTTTGATAATTTACAGAAGTGATGTGAAAACGGCATCATCAACAACACAACCTTAGAACATATGTACGAAATATTTGAAATTAAAGCAAATATCTATCAATTCATCCACTTTCGACAATTGATTGAACCGCAAAGACATGGAATCCGATCCCAACGATCTTCTTCTAGGTCAAATTTGTAGTCATACGTCAATTCATCAC ]
[-] EMBL AA559584 [ GGGAATAAACGTCTCCAAAGTACCGGAAGTATTTCAGGTAACAGAAGAAATATAGGCGCAGTTTGATAATTTACAGAAGTGATGTGAAAACGGC ]
consensusID : consensus_8085#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence
[TACTATGGGAGAACGAGAACTACGTTAAAGAAGAACANAATTAACTCAAAAATATCTGAAAGTTTGATTTTGAAAGTATAGGAAATAAACGTCTAAAAAGTACCGGAAGTATTTCAGGTAACAGAAGAAATATAGGCGCAGTTATCATCAACAACACAACCTTAGAACATATGTACGAAATATTTGAAATTAAAGCAAATATCTATCAATTCATCCACTTTCGACAATTGATTGAACCGCAAAGACATGGAATCCGATCCCAACGATCTTCTTCTAGGTCAAATTTCTCGATATTCTTACTAGCAATTATCACTATATGGTTAGAATTATCACAGTGGAGTATCTCTGCAGTACAGTTAGGATCACAAGAATGATTAATATAACGAGCTAAACCACCAGACATAGTTGCATCTACGTATATATTCCTCGATTTTGCGACTCATATAAGCGTTCTCTTCGATTAGCTACTTCGTTACGAATGACCTCTCCCAGATACTCAATAATGAAGGTACTTTTACTTATATCACGAGCAGCATACAATCCCAGCGACATTTGTTTTCCAATCCCAACGTAGTCGGCGATACTGTTGAGATTTGC]
[-] EMBL CD080979 [TACTATGGGAGAACGAGAACTACGTTAAAGAAGAACANAATTAACTCAAAAATATCTGAAAGTTTGATTTTGAAAGTATAGGAAATAAACGTCTAAAAAGTACCGGAAGTATTTCAGGTAACAGAAGAAATATAGGCGCAGTTATCATCAACAACACAACCTTAGAACATATGTACGAAATATTTGAAATTAAAGCAAATATCTATCAATTCATCCACTTTCGACAATTGATTGAACCGCAAAGACATGGAATCCGATCCCAACGATCTTCTTCTAGGTCAAATTTCTCGATATTCTTACTAGCAATTATCACTATATGGTTAGAATTATCACAGTGGAGTATCTCTGCAGTACAGTTAGGATCACAAGAATGATTAATATAACGAGCTAAACCACCAGACATAGTTGCATCTACGTATATATTCCTCGATTTTGCGACTCATATAAGCGTTCTCTTCGATTAGCTACTTCGTTACGAATGACCTCTCCCAGATACTCAATAATGAAGGTACTTTTACTTATATCACGAGCAGCATACAATCCCAGCGACATTTGTTTTCCAATCCCAACGTAGTCGGCGATACTGTTGAGATTTGC]
consensusID : consensus_8085#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 403 fasta sequence
[CTAAGCAATTACCTTTTCAAATTTGGTAAACTGCAGTTAATCCAGGAAATGCCTTTAGCAATAAATCCTACAGGCTCTGCTCGATCTGAACCAAAGCTTCGAACTTATATCCGGCGCAGGTCTACCGGAGATGTTAACATTTGTCCGTATATTGCCCACAACCACGTTTTTCTCGAAACTCCTGGTCATCCTTATAGTTCAGATATCGGCAGTCCCACCTACCTGAATTCTCTGTCTCCGAGCACGACCAGCAAATCTCAACAGTATCGCCGACTACGTTGGGATTGGAAAACAAATGTCGTCTTAGCACGATCTCGAATACAAGGCCTGGGATTGTATGCTGCTCGTGATATAAGTAAAAGTACCTTCATTATTGAGTATCTGGGAGAGGTCATTCGTAACG]
[-] EMBL CD189516 [CTAAGCAATTACCTTTTCAAATTTGGTAAACTGCAGTTAATCCAGGAAATGCCTTTAGCAATAAATCCTACAGGCTCTGCTCGATCTGAACCAAAGCTTCGAACTTATATCCGGCGCAGGTCTACCGGAGATGTTAACATTTGTCCGTATATTGCCCACAACCACGTTTTTCTCGAAACTCCTGGTCATCCTTATAGTTCAGATATCGGCAGTCCCACCTACCTGAATTCTCTGTCTCCGAGCACGACCAGCAAATCTCAACAGTATCGCCGACTACGTTGGGATTGGAAAACAAATGTCGTCTTAGCACGATCTCGAATACAAGGCCTGGGATTGTATGCTGCTCGTGATATAAGTAAAAGTACCTTCATT ]
[+] EMBL CD063425 [ gaaggtaCTTCGAACTTATATCCGGCGCAGGTCTACCGGAGATGTTAACATTTGTCCGTATATTGCCCACAACCACGTTTTTCTCGAAACTCCTGGTCATCCTTATAGTTCAGATATCGGCAGTCCCACCTACCTGAATTCTCTGTCTCCGAGCACGACCAGCAAATCTCAACAGTATCGCCGACTACGTTGGGATTGGAAAACAAATGTCGTCTTAGCACGATCTCGAATACAAGGCCTGGGATTGTATGCTGCTCGTGATATAAGTAAAAGTACCTTCATTATTGAGTATCTGGGAGAGGTCATTCGTAACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8085#0 TATGGACAACTTTTATTATAACCTTTCGGAATTATAATACAGAAATTAATAACATAAGTT 60
consensus_8085#1 ------------------------------------------------------------
consensus_8085#2 ------------------------------------------------------------
consensus_8085#0 TAAATAAACAAAACCCACAGCCAGTAAGATGCTTTATACACAAACTCAAAGGGTCAATAT 120
consensus_8085#1 ------------------------------------------------------------
consensus_8085#2 ------------------------------------------------------------
consensus_8085#0 GTACATAAAGAAAATCTGAAATGTGATTAAACTAAATGAATTTGGTGATTATATGACGGA 180
consensus_8085#1 ------------------------------------------------------------
consensus_8085#2 ------------------------------------------------------------
consensus_8085#0 AATAATATCACAAAGGGCAAAAAGAAAATGCGACCATACTTATGGAGAACGAGAACTAC- 239
consensus_8085#1 ------------------------------------TACTATGGGAGAACGAGAACTAC- 23
consensus_8085#2 -------------------------CTAAGCAATTACCTTTTCAAATTTGGTAAACTGCA 35
* * * **** *
consensus_8085#0 GTTAAAGAAGAACAAAATTAACTCAAAAATATCTGAAAGTTTGATTTTGAAAGTATAGGA 299
consensus_8085#1 GTTAAAGAAGAACANAATTAACTCAAAAATATCTGAAAGTTTGATTTTGAAAGTATAGGA 83
consensus_8085#2 GTTAATCCAGGAAATGCCTTTAGCAATAAATCCTACAGGCTCTGCTC-----GATCTGAA 90
***** ** * * * *** ** ** * * * * * * *
consensus_8085#0 AATAAACGTCTAAAAAGTACCGGAAGTATTTCAGGTAACAGAAGAAATATAGGCGCAGTT 359
consensus_8085#1 AATAAACGTCTAAAAAGTACCGGAAGTATTTCAGGTAACAGAAGAAATATAGGCGCAGTT 143
consensus_8085#2 CCAAAGCTTCGAACTTATATCCGGCGCAGGTCTACCGGAGATGTTAACATTTGTCCGTAT 150
** * ** ** ** * * * * ** ** ** * * *
consensus_8085#0 TGATAATTTACAGAAGTGATGTGAAAACGGCATCATCAACAAC-ACAACCTTAGAACATA 418
consensus_8085#1 -------------------------------ATCATCAACAAC-ACAACCTTAGAACATA 171
consensus_8085#2 -------------------------------ATTGCCCACAACCACGTTTTTCTCGAAAC 179
** * ***** ** ** *
consensus_8085#0 TGTACGAAATATTTGAAATTAAAGCAAATATCTATCAATTCATCCACTTTCGACAATTGA 478
consensus_8085#1 TGTACGAAATATTTGAAATTAAAGCAAATATCTATCAATTCATCCACTTTCGACAATTGA 231
consensus_8085#2 TCCTGGTCATCCTTATAGTT----CAGATATCGGCAGTCCCACCTACCTG----AATTCT 231
* * ** ** * ** ** ***** ** * ** * ****
consensus_8085#0 TTGAACCGCAAAGACATGGAATCCGATCCCAACG--ATCTTCTTCTAGGTCAAATTTGTA 536
consensus_8085#1 TTGAACCGCAAAGACATGGAATCCGATCCCAACG--ATCTTCTTCTAGGTCAAATTT--- 286
consensus_8085#2 CTGTCTC-CGAGCACG-ACCAGCAAATCTCAACAGTATCGCCGACTACGTTGGGATTGGA 289
** * * * ** * * *** **** *** * *** ** **
consensus_8085#0 GTCATACGTCAATTCATCACCCTTCTCGATATTCTTACTAGCAATTATCACTATATGGTT 596
consensus_8085#1 ------------------------CTCGATATTCTTACTAGCAATTATCACTATATGGTT 322
consensus_8085#2 A------AACAAATGTCGTCTTAGCACGATCTCGAATACAAGGCCTGGGATTGTATGCTG 343
* **** * * * * * **** *
consensus_8085#0 AGAATTATCACAGTGGAGTATCTCTGCA-------------------------------- 624
consensus_8085#1 AGAATTATCACAGTGGAGTATCTCTGCAGTACAGTTAGGATCACAAGAATGATTAATATA 382
consensus_8085#2 CTCGTGATATAAGTAAAA-GTACCTTCATTATTGAGTATCTGGGAGAGGTCATTCGTAAC 402
* ** *** * * ** **
consensus_8085#0 ------------------------------------------------------------
consensus_8085#1 ACGAGCTAAACCACCAGACATAGTTGCATCTACGTATATATTCCTCGATTTTGCGACTCA 442
consensus_8085#2 G----------------------------------------------------------- 403
consensus_8085#0 ------------------------------------------------------------
consensus_8085#1 TATAAGCGTTCTCTTCGATTAGCTACTTCGTTACGAATGACCTCTCCCAGATACTCAATA 502
consensus_8085#2 ------------------------------------------------------------
consensus_8085#0 ------------------------------------------------------------
consensus_8085#1 ATGAAGGTACTTTTACTTATATCACGAGCAGCATACAATCCCAGCGACATTTGTTTTCCA 562
consensus_8085#2 ------------------------------------------------------------
consensus_8085#0 -----------------------------------
consensus_8085#1 ATCCCAACGTAGTCGGCGATACTGTTGAGATTTGC 597
consensus_8085#2 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||