|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8087#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 833 fasta sequence
[TTCGTTCGAGGGGAAG-CATGATTGGTTGTTTTGGATAATGTCTGATGTGTTCTGGGATGAATTCAATACGGATACAAGTAATATCTATTTGAAAACCACTGCTCTCATACAACAAATATTATCTGCTACACATGAAGAAGAGCAGGAGTTAAAATTGTCAGGTGATCGGGCAGCTCAACTGCGAGAAGTCAATAACAAGTTACGTGAACGCCTTATAAACGATGAGAAGCGGGTGGATTGTATGATATCTAGATTACAGACCATAAAGCGGACAATCAAAGAGTTACGTGCTTCCATTGAGAAATTTAAGTCAATTAAGATCGCTTACTTGAAACAAATCGAATCTGAAAATCCTCCTGAAGATTCATTTTTTCCATGTGAATTTGAAAATTCTACACTGATGCAAATTTATAAAATGATTCAACCATTCGAACGCGTACTTGGAATTCAAATACAGAAAACGCATTCTGGACTACTACAGTTGCTATTCCATGGTTGTTCAGAAGCTCTGGTTAATAG-TGATGAA-GTAATTGTATGTTGTTGTCAACTTCGT-ATTGTAAATACTAATCGCTTTGAAGTCGTGTTGTGTGATCCACCAGTACCGGATCTAGAAAGGCTTGTAAAGCACCTGAATTGGACTGAAGATATACGGAGTTTTATCATTGTATTAAGACAACGTTTTTGTCGTTACTTTGAATTAGCTGCGGCAGTTTCTAATAAATTAAGCTCTGAATGACCAATATGTTAATGAGCATACTGACAATGTACTATGATTAACCTTTGCTATGCATGAATTTGTCATAATTTATGTTCATCTTACGCTTATATCTTAT]
[+] EMBL CD077765 [TTCGTTCGAGGGGAAG CATGATTGGTTGTTTTGGATAATGTCTGATGTGTTCTGGGATGAATTCAATACGGATACAAGTAATATCTATTTGAAAACCACTGCTCTCATACAACAAATATTATCTGCTACACATGAAGAAGAGCAGGAGTTAAAATTGTCAGGTGATCGGGCAGCTCAACTGCGAGAAGTCAATAACAAGTTACGTGAACGCCTTATAAACGATGAGAAGCGGGTGGATTGTATGATATCTAGATTACAGACCATAAAGCGGACAATCAA ]
[+] EMBL CD078082 [ GAAGATATGATTGGTTGTTTTGGATAATGTCTGATGTGTTCAGGGATGAATTCAATACGGATACAAGTAATATCTATTTGAAAACCACTGCTCTCATACAACANATATTATCTGCTACACATGAAGAAGAGCAGGAGTTAAAATTGTCAGGTGATCGGGCAGCTCAACTGCGAGAAGTCAATAACAAGTTACGTGAACGCCTTATAAACGATGAGAAGCGGGTGGATTGTATGATATCTAGATTACAGACCATAAAGCGGA ]
[+] EMBL SMAA69087 [ CAGGAGATCGGGCAGCTCAACTGCGAGAAGTCAATAACAAGTTACGTGAACNCCTTATAAACG CGAGAAGCGGGTGGATTGTATGATATCTAGATTACAGACCATAAAGCNGACAATCAAAGAGTTACGTGCTTCCATTGAGAAATTTAAGTCAATTAAGATCGCTTACTTNAAACAA ]
[-] EMBL CD074772 [ GGATTGTATGATATCTAGATTACAGACCATAAAGCGGACAATCAAAGAGTTACGTGCTTCCATTGAGAAATTTAAGTCAATTAAGATCGCTTACTTGAAACAAATCGAATCTGAAAATCCTCCTGAAGATTCATTTTTTCCATGTGAATTTGAAAATTCTACACTGATGCAAATTTATAAAATGATTCAACCATTCGAACGCGTACTTGGAATTCAAATACAGAAAACGCATTCTGGACTACTACAGTTGCTATTCCATGGTTGTTCAGAAGCTCTGGTTAATAG TGATGAA GTAATTGTATGTTGTTGTCAACTTCGT ATTGTAAATACTAATCGCTTTGAAGTCGTGTTGTGTGATCCACCAGTACCGGATCTAGAAAGGCTTGTAAAGCACCTGAATTGGACTGAAGATATACGGAGTTTTATCATTGTATTAAGACAACGTTTTTGTCGTTACTTTGAATTAGCTGCGGCAGTTTCTAATAAATTAAGCTCTGAATGACCAATATGTTAATGAGCATACTGACAATGTACTATGATTAACCTTTGCTATGCATGAATTTGTCATAATTTATGTTCATCTTACGCTTATATCTTAT]
[+] EMBL AA791361 [ TTTAAGTCAATTAAGATCGCTTACTTGAAACAAATCGAATCTGAAAATCCTCCTGAAGATTCATTTTTTCCATGTGAATTTGAAAATTCTACACTGATGCAAATTTATAAAATGATTCAACCATTCGAACGCGTACTTGGAATTCAAATACAGAAAACGCATTCTGGACTACTACAGTTGCTATTCCATGGTTGTTCAGAAGCTCTGGTTAATAGTTGATGAATGTAATTGATTGTTGTTG CAACTTCTTGATTtgaa ]
consensusID : consensus_8087#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 763 fasta sequence
[TGTCGGTACTAGGAAGTACGGGGTTTTCAGTACATCGTTGGTTTTTTTTGAAATCATCTAGGATATGATTGGTTGTTTTGGATAATGTCTGATGTGTTCAGGGATGAATTCAATACGGATACAAGTATACAACAAATATTATCTGCTACACATGAAGAAGAGCAGGAGTTAAAATTGTCAGGTGATCGGGCAGCTCAACTGCGAGAAGTCAATAACAAGTTACGTGAACGCCTTATAAACGATGAGAAGCGGGTGGATTGTATGNNNNNNNNNNNNNNNNNNNNNNNNGGACAATCAAAGAGTTACGTGCTTCCATTGAGAAATTTAAGTCAATTAAGATCGCTTACTTGAAACAAATCGAATCTGAAAATCCTCCTGAAGATTCATTTTTTCCATGTGAATTTGAAAATTCTACACTGATGCAAATTTATAAAATCAAATACAGAAAACGCATTCTGGACTACTACAGTTGCTATTCCATGGTTGTTCAGAAGCTCTGGTTAATAGTGATGAAGTAATTGTATGGTTGTTGTCAACTTCGTATTGTAAATACTAATCGCTTTGAAGTCGTGTTGTGTGATCCACCAGTACCGGATCTAGAAAGGCTTGATTGTATTAAGACACGTTTTTGTCGTTACTTTGAATAGCTGCGGCAGTTTCTAATAATAAGCTCTGATGACCATATGTTATGAGCTACTGACATGTACTATGATACCTTGCTTGCATGAATTGNATAATNATGTCATCTACGCTATATCTATCT]
[+] EMBL CD080938 [TGTCGGTACTAGGAAGTACGGGGTTTTCAGTACATCGTTGGTTTTTTTTGAAATCATCTAGGATATGATTGGTTGTTTTGGATAATGTCTGATGTGTTCAGGGATGAATTCAATACGGATACAAGTATACAACAAATATTATCTGCTACACATGAAGAAGAGCAGGAGTTAAAATTGTCAGGTGATCGGGCAGCTCAACTGCGAGAAGTCAATAACAAGTTACGTGAACGCCTTATAAACGATGAGAAGCGGGTGGATTGTATGNNNNNNNNNNNNNNNNNNNNNNNNGGACAATCAAAGAGTTACGTGCTTCCATTGAGAAATTTAAGTCAATTAAGATCGCTTACTTGAAACAAATCGAATCTGAAAATCCTCCTGAAGATTCATTTTTTCCATGTGAATTTGAAAATTCTACACTGATGCAAATTTATAAAATCAAATACAGAAAACGCATTCTGGACTACTACAGTTGCTATTCCATGGTTGTTCAGAAGCTCTGGTTAATAGTGATGAAGTAATTGTATGGTTGTTGTCAACTTCGTATTGTAAATACTAATCGCTTTGAAGTCGTGTTGTGTGATCCACCAGTACCGGATCTAGAAAGGCTTGATTGTATTAAGACACGTTTTTGTCGTTACTTTGAATAGCTGCGGCAGTTTCTAATAATAAGCTCTGATGACCATATGTTATGAGCTACTGACATGTACTATGATACCTTGCTTGCATGAATTGNATAATNATGTCATCTACGCTATATCTATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8087#0 ------------------------------------------TTCGTTCGAGGGGA---- 14
consensus_8087#1 TGTCGGTACTAGGAAGTACGGGGTTTTCAGTACATCGTTGGTTTTTTTTGAAATCATCTA 60
** ** ** *
consensus_8087#0 -AGCATGATTGGTTGTTTTGGATAATGTCTGATGTGTTCTGGGATGAATTCAATACGGAT 73
consensus_8087#1 GGATATGATTGGTTGTTTTGGATAATGTCTGATGTGTTCAGGGATGAATTCAATACGGAT 120
*********************************** ********************
consensus_8087#0 ACAAGTAATATCTATTTGAAAACCACTGCTCTCATACAACAAATATTATCTGCTACACAT 133
consensus_8087#1 ACAAGTA---------------------------TACAACAAATATTATCTGCTACACAT 153
******* **************************
consensus_8087#0 GAAGAAGAGCAGGAGTTAAAATTGTCAGGTGATCGGGCAGCTCAACTGCGAGAAGTCAAT 193
consensus_8087#1 GAAGAAGAGCAGGAGTTAAAATTGTCAGGTGATCGGGCAGCTCAACTGCGAGAAGTCAAT 213
************************************************************
consensus_8087#0 AACAAGTTACGTGAACGCCTTATAAACGATGAGAAGCGGGTGGATTGTATGATATCTAGA 253
consensus_8087#1 AACAAGTTACGTGAACGCCTTATAAACGATGAGAAGCGGGTGGATTGTATGNNNNNNNNN 273
***************************************************
consensus_8087#0 TTACAGACCATAAAGCGGACAATCAAAGAGTTACGTGCTTCCATTGAGAAATTTAAGTCA 313
consensus_8087#1 NNNNNNNNNNNNNNN-GGACAATCAAAGAGTTACGTGCTTCCATTGAGAAATTTAAGTCA 332
********************************************
consensus_8087#0 ATTAAGATCGCTTACTTGAAACAAATCGAATCTGAAAATCCTCCTGAAGATTCATTTTTT 373
consensus_8087#1 ATTAAGATCGCTTACTTGAAACAAATCGAATCTGAAAATCCTCCTGAAGATTCATTTTTT 392
************************************************************
consensus_8087#0 CCATGTGAATTTGAAAATTCTACACTGATGCAAATTTATAAAATGATTCAACCATTCGAA 433
consensus_8087#1 CCATGTGAATTTGAAAATTCTACACTGATGCAAATTTATAAAAT---------------- 436
********************************************
consensus_8087#0 CGCGTACTTGGAATTCAAATACAGAAAACGCATTCTGGACTACTACAGTTGCTATTCCAT 493
consensus_8087#1 ---------------CAAATACAGAAAACGCATTCTGGACTACTACAGTTGCTATTCCAT 481
*********************************************
consensus_8087#0 GGTTGTTCAGAAGCTCTGGTTAATAGTGATGAAGTAATTGTATG-TTGTTGTCAACTTCG 552
consensus_8087#1 GGTTGTTCAGAAGCTCTGGTTAATAGTGATGAAGTAATTGTATGGTTGTTGTCAACTTCG 541
******************************************** ***************
consensus_8087#0 TATTGTAAATACTAATCGCTTTGAAGTCGTGTTGTGTGATCCACCAGTACCGGATCTAGA 612
consensus_8087#1 TATTGTAAATACTAATCGCTTTGAAGTCGTGTTGTGTGATCCACCAGTACCGGATCTAGA 601
************************************************************
consensus_8087#0 AAGGCTTGTAAAGCACCTGAATTGGACTGAAGATATACGGAGTTTTATCATTGTATTAAG 672
consensus_8087#1 AAGGCTTG-----------------------------------------ATTGTATTAAG 620
******** ***********
consensus_8087#0 ACAACGTTTTTGTCGTTACTTTGAATTAGCTGCGGCAGTTTCTAATAAATTAAGCTCTGA 732
consensus_8087#1 ACA-CGTTTTTGTCGTTACTTTGAAT-AGCTGCGGCAGTTTCTAATAA--TAAGCTCTGA 676
*** ********************** ********************* **********
consensus_8087#0 ATGACCAATATGTTAATGAGCATACTGACAATGTACTATGATTAACCTTTGCTATGCATG 792
consensus_8087#1 -TGACCA-TATGTTA-TGAGC-TACTGACA-TGTACTATGAT---ACCTTGCT-TGCATG 727
****** ******* ***** ******** *********** * ***** ******
consensus_8087#0 AATT-TGTCATAATTTATGTTCATCTTACGCTTATATCTTAT 833
consensus_8087#1 AATTGNATAATNATGT-CATCTACGCTATATCTATCT----- 763
**** * ** ** * * * ** *** *
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||