These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 920 fasta sequence [CCCTCCGAGGCCANAATTCGGCACGAGGAAAAAAACTACATACCTTCCATTTGGTTAAATAATATTTACACGTAATTTTCAACTGTTGAAACCACTTATCCAAAAATTTAGAATCAAATTAGAAAATAATATTTGTTTTTAGTTCTGACATTATACGATTTAAGTTAGTCGTTTGCTTGTATACCATTATAGTATCTCGAGCTTTTTGTGTTCTGTACATTGATTTTAGGTACTTCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTTAAAGCA-ATTTTTAATGATTCATTTAACACT--AACGANCAGTGGACCGATTACTTTCTTTAGTAATTCTCTGATTAAA-CGTATNTGGTG-GTATGATTTTATTGTACAGNTAANTACCTTACTAGATTNTTTGATATAAGGGCTTCGATCTGACTAGAGTTTTTTATTGAATGCANATGNTANTGGNTGGTAAGCTNCTGCACAAAATACNTTTCTACACTCTCTGTAGTAATAGCTATGGGATAAAT] [+] EMBL CD081984 [CCCTCCGAGGCCANAATTCGGCACGAGGAAAAAAACTACATACCTTCCATTTGGTTAAATAATATTTACACGTAATTTTCAACTGTTGAAACCACTTATCCAAAAATTTAGAATCAAATTAGAAAATAATATTTGTTTTTAGTTCTGACATTATACGATTTAAGTTAGTCGTTTGCTTGTATACCATTATAGTATCTCGAGCTTTTTGTGTTCTGTACATTGATTTTAGGTACTTCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTTAAAGCA ATTTTTAATGATTCATTTAACACT AACGANCAGTGGACCGATTACTTTCTTTAGTAATTCTCTGATTAAA CGTATNTGGTG GTATGATTTTATTGTACAGNTAANTACCTTACTAGATTNTTTGATATAAGGGCTTCGATCTGACTAGAGTTTTTTATTGAATGCANATGNTANTGGNTGGTAAGCTNCTGCACAAAATACNTTTCTACACTCTCTGTAGTAATAGCTATGGGATAAAT] [+] EMBL CD081962 [ gAATTCGGCACGAGG ACAAAACTACATACCTTCCATTTGGTTAAATAATATTTACACGTAATTTTCAACTGTTGAAACCACTTATCCAAAAATTTAGAATCAAATTAGAAAATAATATTTGTTTTTAGTTCTGACATTATACGATTTAAGTTAGTCGTTTGCTTGTATACCATTATAGTATCTCGAGCTTTTTGTGTTCTGTACATTGATTTTAGGTACTTCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTT AAGCANATTNTTAATGATTCATTTAACACTAAAACGA CAGTGGACCGNATACTNTCTTTAGTAATTCTCTGATTAAANCGTAT TGGTGTAAATGA TTTATTGTACAGNTAANTACCTTACTAGA TNNTTGATAT AGGGCTTCGA CTGACTAGAG TTTTTATTTGATGCANATG TA TGG TGGTAAGCT CTGC C AAATAC TTCT CACTCT TG AGTAATA CT TGGat ] consensusID : consensus_8098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 846 fasta sequence [CTACCAGCCAAAAATTCGGCACGAGGTGATTTGTTGCATGATTCTCTCACTGCTCTCCACCAGCGCAGCTTACAAGGTACCTTCAGGCTAGACACAAACCTAGCAAACACTGAAGGTTTCAGGTCACATGCCTCAAGGTACTTCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGACAAGTGGACCGATTACTTTCTGTTTAGTAATTCTCTGATTAAACGTATTTGGTGTAATGATTTTATTGTACAGTTAAATACCTTACTAGATTTTTTGATATAAGGCTTTCGATCTGACTAGAGTTTTTTATTTGAATGCAGATGTTAGTGGTGGTAAAGCTCCTGCACAAAAATACTTTCTACAACTCTCTGTAGTAAATAGCTATGGAAT-AATNAAAATAGNTGATG] [+] EMBL CD079751 [CTACCAGCCAAAAATTCGGCACGAGGTGATTTGTTGCATGATTCTCTCACTGCTCTCCACCAGCGCAGCTTACAAGGTACCTTCAGGCTAGACACAAACCTAGCAAACACTGAAGGTTTCAGGTCACATGCCTCAAGGTACTTCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGACAAGTGGACCGATTACTTTCTGTTTAGTAATTCTCTGATTAAACGTATTTGGTGTAATGATTNTATTGTACAGTTAAATACCTTACTAGATTTTTTGATATAAGGCTNTCGATCTGACTAGAGTTTTTTATTTGAATGCAGATGTTAGTGGTGGGTAAGCTCCTGCAC AAAATACTNTCTANCACTCTCTGTAGTAAATAGCTATGGAAT AATNANAATAGNTGAT ] [-] EMBL CD074011 [ TACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGACAAGTGGACCGATTACTTTCTGTTTAGTAATTCTCTGATTAAACGTATTTGGTGTAATGATTTTATTGTACAGTTAAATACCTTACTAGATTTTTTGATATAAGGCTTTCGATCTGACTAGAGTTTTTTATTTGAATGCAGATGTTAGTGGTGGTAAAGCTCCTGCACAAAAATACTTTCTACAACTCTCTGTAGTAAATAGCTATGGAATAAATAAAAATAGTTGATG] [-] EMBL CD076328 [ TCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAACGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCCCAATTCAACATATTTTGAATGTAATAAATTCCTTCAAGAGTATATTGGCTGACGAGTGTGATGCAATCAGGTTATTCCCCTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGACAAGTGGACCGATTACTTTCTGTTTAGTAATTCTCTGATTAAACGTATTTGGTGTAATGATTTTATTGTACAGTTAAATACCTTACTAGATTTTTTGATATAAGGCTTTCGATTTGACTAGAGTTTTTTATTTGAATGCAGATGTTAGTGGTGGTAAAGCTCCTGCACAAAAATACTTTTTACAACTCTCTGTAGTAAATAGCTATGGAAT AAataa ] consensusID : consensus_8098#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [CCTCCGAGGCCAATAATTCGGCACGAGGCTCACTGCTCTCTACCAGCGCAGCTTACAAGGTACCTTCAGGCTAGACACAAACCTAGCAAACACTGAAGGTTTCAGGTCACATGCCTCAAGGTACTTCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGGCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAACGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTANACAGTCGCCTTCCTAAAGTTGTCCCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATATTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGANCAGTGGACCGATTA] [+] EMBL CD082737 [CCTCCGAGGCCAATAATTCGGCACGAGGCTCACTGCTCTCTACCAGCGCAGCTTACAAGGTACCTTCAGGCTAGACACAAACCTAGCAAACACTGAAGGTTTCAGGTCACATGCCTCAAGGTACTTCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGGCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAACGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTANACAGTCGCCTTCCTAAAGTTGTCCCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATATTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGANCAGTGGACCGATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8098#1 ------------------------------------------------------------ consensus_8098#2 ------------------------------------------------------------ consensus_8098#0 CCCTCCGAGGCCANAATTCGGCACGAGGAAAAAAACTACATACCTTCCATTTGGTTAAAT 60 consensus_8098#1 -------------------------------CTACCAG-CCAAAAATTCGGCACGAGGTG 28 consensus_8098#2 ------------------------------CCTCCGAGGCCAATAATTCGGCACGAGG-- 28 consensus_8098#0 AATATTTACACGTAATTTTCAACTGTTGAAACCACTTATCCAAAAATTTAGAATCAAA-- 118 * * **** **** * * * consensus_8098#1 ATTTGTTGCATGATTCTCTCACTGCTCTCCACCAGCGCAGCTTACAAGGTA-CCTTCAGG 87 consensus_8098#2 -----------------CTCACTGCTCTCTACCAGCGCAGCTTACAAGGTA-CCTTCAGG 70 consensus_8098#0 --TTAGAAAATAATATTTGTTTTTAGTTCTGACATTATACGATTTAAGTTAGTCGTTTGC 176 * ** ** * * *** ** * * * consensus_8098#1 CTAGACACAAACCTAGCAAACACTGAAGGTTTCAGGTCACATGCCTCAA-----GGTACT 142 consensus_8098#2 CTAGACACAAACCTAGCAAACACTGAAGGTTTCAGGTCACATGCCTCAA-----GGTACT 125 consensus_8098#0 TTGTATACCATTATAGTA--TCTCGAGCTTTTTGTGTTCTGTACATTGATTTTAGGTACT 234 * * ** * *** * ** *** ** * * * * ****** consensus_8098#1 TCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAA 202 consensus_8098#2 TCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAA 185 consensus_8098#0 TCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAA 294 ************************************************************ consensus_8098#1 TGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAG 262 consensus_8098#2 TGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGGCGTAAG 245 consensus_8098#0 TGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAG 354 ***************************************************** ****** consensus_8098#1 GAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTC 322 consensus_8098#2 GAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAACGAACTC 305 consensus_8098#0 GAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTC 414 **************************************************** ******* consensus_8098#1 ATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCA 382 consensus_8098#2 ATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCA 365 consensus_8098#0 ATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCA 474 ************************************************************ consensus_8098#1 TTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCA 442 consensus_8098#2 TTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCA 425 consensus_8098#0 TTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCA 534 ************************************************************ consensus_8098#1 TTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCA 502 consensus_8098#2 TTTGCCGAGACCGTTACAAACCATTACGCCCTANACAGTCGCCTTCCTAAAGTTGTCCCA 485 consensus_8098#0 TTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCA 594 ********************************* *********************** ** consensus_8098#1 ATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGAT 562 consensus_8098#2 ATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATATTGGCTGACGAGTGTGAT 545 consensus_8098#0 ATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGAT 654 ***************************************** ****************** consensus_8098#1 GCAATCAGGTTATTCCACTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGACAAG 622 consensus_8098#2 GCAATCAGGTTATTCCACTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGANCAG 605 consensus_8098#0 GCAATCAGGTTATTCCACTTTAAAGCAATTTTTAATGATTCATTTAACACTAACGANCAG 714 *********************** ****************************** ** consensus_8098#1 TGGACCGATTACTTTCTGTTTAGTAATTCTCTGATTAAACGTATTTGGTGTAATGATTTT 682 consensus_8098#2 TGGACCGATTA------------------------------------------------- 616 consensus_8098#0 TGGACCGATTACTTTC--TTTAGTAATTCTCTGATTAAACGTATNTGGTGGTATGATTTT 772 *********** consensus_8098#1 ATTGTACAGTTAAATACCTTACTAGATTTTTTGATATAAGGCTTTCGATCTGACTAGAGT 742 consensus_8098#2 ------------------------------------------------------------ consensus_8098#0 ATTGTACAGNTAANTACCTTACTAGATTNTTTGATATAAGGGCTTCGATCTGACTAGAGT 832 consensus_8098#1 TTTTTATTTGAATGCAGATGTTAGTGGTGGTAAAGCTCCTGCACAAAAATACTTTCTACA 802 consensus_8098#2 ------------------------------------------------------------ consensus_8098#0 TTTTTATT-GAATGCANATGNTANTGGNTGGTAAGCTNCTGCACAAAATACNTTTCTACA 891 consensus_8098#1 ACTCTCTGTAGTAAATAGCTATGGAATAATNAAAATAGNTGATG 846 consensus_8098#2 -------------------------------------------- consensus_8098#0 -CTCTCTGTAGTAA-TAGCTATGGGATAAAT------------- 920 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||