cluster # 8102

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Schistosoma mansoni
cluster # 8102 cluster # 8102 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8102#0 length = 1265 sequences # 5

consensus_8102#1 length = 565 sequences # 1

consensusID : consensus_8102#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1265
fasta sequence

                              [ACGGTACTTCAAGCTATTCAATCAATGATGTTCCCCAACTATCATAAATTCCTAACTACGAGTTTCCGTAGTTACAGTGCCAAGAAACTGCTTCCGAGGTACGATATAGTAATTGTCGGTGGTGGGATGGTTGGATTTGGTTTGGCTGCCGTTGCAGCAGCCTCCAAATTTCTCGGCGAGAA-AAATATTTTATTGCTAGAAAGTTCTGGTAAAAAAACGTATCAACGTAAAGAAGAATATGAAAATCGTGTCGTTGCTCTTAACGACCTTTCGGTAAACATGCTGAAAAATATTGGTGTCT-GGGAATTTATTCAGTCATTCCGTTCTCAGCCTGTAAATAAAATGAAAGTATGGGAAACAAAGTCAAACCTTTACTTAACATTTCAACGCAATCCCTTGGCATATATAGTAGAAAATGATTTAGTTATTGAATCACTTCGCAATCATCTGGAATCGATTAATAATTCTCCAAATGTGACAATATTATATGAAGCACAAGCTGAAAACA-TCAGCTACCTTCTCGAGATCATCCAGAACA-TTAG-TCGTTT-GNCG-TC-ACAAAGGA-ANAG-ATAAACGGGAAACTGTTGAAACAGATCTACTTGTTGGTGCCGATGGGTTCAATTCACTTGTCCGTAAAACAGCTAATATTCATACAATTGGTTGGAATCATAATCAAAAAGCAATTGTAGCAACTTTAAAATTGGAACAGGCTAATAATGAATCTATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATTATCGAAAGAGTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGATGAATTTAAAAGATTCAGATTNNTATTC-AGAGTTGAATGACTGTTTGACTAAACCTAGTGAATCGATGTCACCAATAGGTACAGTTCTCAGTAACGTGGGACAATGTTTTGCTGGTGTTGTTGATTACTTTGGTAAATCAAAT-AAATCTACAGAAAATGAAAGTGAATCCAGCTCATTTTCCAACACCATCAGTAGTATCAATCCAACCAAATACGAAAAGGGCTTGTTTCCCTCTAGGTTTTCAACATGCAATCATCTATTTGCCATAATTCTAAACTATCATATTTAATAAATAAGTTTATCACAAATATTCGTGGAACTGGAATGAGTACTATTCAATCTAGTCAAGTATTAAAGGAATTTTTGATGGGAGTNCGCTGTCACTGGACAAATCGGAACATCACAATCCAAAACCCACTTATTGCTTGTAGTTG]

[+] EMBL CD112490             [ACGGTACTTCAAGCTATTCAATCAATGATGTTCCCCAACTATCATAAATTCCTAACTACGAGTTTCCGTAGTTACAGTGCCAAGAAACTGCTTCCGAGGTACGATATAGTAATTGTCGGTGGTGGGATGGTTGGATTTGGTTTGGCTGCCGTTGCAGCAGCCTCCAAATTTCTCGGCGAGAACAAATATTTTATTGCTAGAAAGTTCTGGTAAAAAAACGTATCAACGTAAAGAAGAATATGAAAATCGTGTCGTTGCTCTTAACGACCTTTCGGTAAACATGCTGAAAAATATTGGTGTCT GGAAATTTATTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL SM961                [                                                                                                        TATAGTAATTGTCGGTGGTGGGATGGTTGGATTTGGTTTGGCTGNCGTTGCAGCAGNCTCCAAATTTCTCGGNAAGAA AAATATTTTATTGCTAGAAAGTTCTGGTAAAAAAACGTATCAACGTAAAGAAGAATATGAAAATCGTGTCGTTGCTCTTAACGACCTTTCGGTAAACATGCTGAAAAATATTGGTGTNTGGGGAATTTATCCAGTCATTCCGTTCTCAGCCTGTAAATAAAATGAAAGTATGGGAAACAAAGTCAAACCTTTACTTAACATTTCAACGCAATCCCTTGGCATATATAGTAGAAAATGATTTAGTTATTGAATCACTTCGCAATCATCTGGAATCGATTAATAATTCTCCAAATGTGACAATATTATATGAAGCACAAGCTGAAAACA TCAGCTACCTTCTCGAGATCATCCAGAACA TTAG TCGTTT GNCG TC ACAAAGGA ANAG ATTAACGGG AACTGTGGAA  AGATCTNCTGGTGGGgcg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD154139             [                                                                                                                                                                                                                                                                                                                GGAATTTATTCAGTCATTCCGTTCTCAGCCTGTAAATAAAATGAAAGTATGGGAAACAAAGTCAAACCTTTACTTAACATTTCAACGCAATCCCTTGGCATATATAGTAGAAAATGATTTAGTTATTGAATCACTTCGCAATCATCTGGAATCGATTAATAATTCTTCAAATGTGACAATATTATATGAAGCACAAGCTGAAAACATTCAGCTACCTTCTCGAGATCATCCAGAACATTTAGTTCGTTTAGACGTTCAACAAAGGACACAGAATAAACGGGAAACTGTTGAAACAGATCTACTTGTTGGTGCCGATGGGTTCAATTCACTTGTCCGTAAAACAGCTAATATTCATACAATTGGTTGGAATCATAATCAAAAAGCAATTGTAGCAACTTTAAAATTGGAACAGGCTAATAATGAATCTATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATTATCGAAAGAGTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGATGAATTTAAAAGATTCAGATTNNTATTC AGAGTTGAATGACTGTTTGACTAAACCTAGTGAATCGATGTCACCAATAGGTAC                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD139190             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AAACGGGAAACTGTTGAAACAGATCTACTTGTTGGTGCCGATGGGTTCAATTCACTTGGCCGTAAAACAGCTAATATTCATACAATTGGTTGGAATCATAATCAAAAAGCAATTGTAGCAACTTTAAAATTGGAACAGGCTAATAAAGAATCTATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATTATCGAAAGAGTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGATGAATTTAAAAGATTCAGATT TTATTCAAGAGTTGAATGACTGTTTGACTAAACCTAGTGAATCGATGTCACAAATAGGTACAGTTCTCAGTAACGTGGGACAATGTTTTGCTGGTGTTGTTGATTACTTTGGTAAATCAAAT AAATCTA                                                                                                                                                                                                                                                                                             ]
[-] EMBL SM765                [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGGACAATGTTTTGCTGGTGTTGTTGATTACTTTGGTAATCCAAATAAAATCTACAGAAAATGAAAGTGAATCCAGCTCATTTTCCAACACCATCAGTAGTATCAATCCAACCAAATACGAAAAGGGCTTGTTTCCCTCTAGGTTTTCAACATGCAATCATCTATTTGCCATAATTCTAAACTATCATATTTAATAAATAAGTTTATCACAAATATTCGTGGAACTGGAATGAGTACTATTCAATCTAGTCAAGTATTAAAGGAATTTTTGATGGGAGTNCGCTGTCACTGGACAAATCGGAACATCACAATCCAAAACCCACTTATTGCTTGTAGTTG]




>consensus_8102#0
ACGGTACTTCAAGCTATTCAATCAATGATGTTCCCCAACTATCATAAATTCCTAACTACG
AGTTTCCGTAGTTACAGTGCCAAGAAACTGCTTCCGAGGTACGATATAGTAATTGTCGGT
GGTGGGATGGTTGGATTTGGTTTGGCTGCCGTTGCAGCAGCCTCCAAATTTCTCGGCGAG
AAAAATATTTTATTGCTAGAAAGTTCTGGTAAAAAAACGTATCAACGTAAAGAAGAATAT
GAAAATCGTGTCGTTGCTCTTAACGACCTTTCGGTAAACATGCTGAAAAATATTGGTGTC
TGGGAATTTATTCAGTCATTCCGTTCTCAGCCTGTAAATAAAATGAAAGTATGGGAAACA
AAGTCAAACCTTTACTTAACATTTCAACGCAATCCCTTGGCATATATAGTAGAAAATGAT
TTAGTTATTGAATCACTTCGCAATCATCTGGAATCGATTAATAATTCTCCAAATGTGACA
ATATTATATGAAGCACAAGCTGAAAACATCAGCTACCTTCTCGAGATCATCCAGAACATT
AGTCGTTTGNCGTCACAAAGGAANAGATAAACGGGAAACTGTTGAAACAGATCTACTTGT
TGGTGCCGATGGGTTCAATTCACTTGTCCGTAAAACAGCTAATATTCATACAATTGGTTG
GAATCATAATCAAAAAGCAATTGTAGCAACTTTAAAATTGGAACAGGCTAATAATGAATC
TATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATTATCGAAAGA
GTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGATGAATTTAAA
AGATTCAGATTNNTATTCAGAGTTGAATGACTGTTTGACTAAACCTAGTGAATCGATGTC
ACCAATAGGTACAGTTCTCAGTAACGTGGGACAATGTTTTGCTGGTGTTGTTGATTACTT
TGGTAAATCAAATAAATCTACAGAAAATGAAAGTGAATCCAGCTCATTTTCCAACACCAT
CAGTAGTATCAATCCAACCAAATACGAAAAGGGCTTGTTTCCCTCTAGGTTTTCAACATG
CAATCATCTATTTGCCATAATTCTAAACTATCATATTTAATAAATAAGTTTATCACAAAT
ATTCGTGGAACTGGAATGAGTACTATTCAATCTAGTCAAGTATTAAAGGAATTTTTGATG
GGAGTNCGCTGTCACTGGACAAATCGGAACATCACAATCCAAAACCCACTTATTGCTTGT
AGTTG

consensusID : consensus_8102#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [AATCCTCAGACAATGTTCATGTTTTAAGTTTTTTTATCTTATACATCTATTTCAGTTATGTATATGACTAATTAACTGATAAATTTTCTTCCTCTTTTTATATTCATATCATCAGGCTAATAATGAATCTATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATTATCGAAAGAGTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGATGAATTTAAAAGATTCAGATTTTATTCAAGAGTTGAATGACTGTTTGGTAAGTCGTGAAATCCCTTTATATGTACCTAATCTTTAATGATTGTATGAGAAAATTATCTGCACTAAGTTCACGGACAATTTATTAAACCTGATGCAATTCTCCAAGCAACAAATTTTTTCTAGAACCCTAACTTGTTTTCCAGGTCCAATGTTAAAATCTCTGTGTTTAGAATATTTCATCCAGTTTGGTATATTAAAGCTACAGTGCTAATGTTACAGTCGTTAAGTGGTAAGATATTCATAATTCTGNNCATATTGGTTATCTTTTGCCAAATAT]

[+] EMBL CD178781             [AATCCTCAGACAATGTTCATGTTTTAAGTTTTTTTATCTTATACATCTATTTCAGTTATGTATATGACTAATTAACTGATAAATTTTCTTCCTCTTTTTATATTCATATCATCAGGCTAATAATGAATCTATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATTATCGAAAGAGTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGATGAATTTAAAAGATTCAGATTTTATTCAAGAGTTGAATGACTGTTTGGTAAGTCGTGAAATCCCTTTATATGTACCTAATCTTTAATGATTGTATGAGAAAATTATCTGCACTAAGTTCACGGACAATTTATTAAACCTGATGCAATTCTCCAAGCAACAAATTTTTTCTAGAACCCTAACTTGTTTTCCAGGTCCAATGTTAAAATCTCTGTGTTTAGAATATTTCATCCAGTTTGGTATATTAAAGCTACAGTGCTAATGTTACAGTCGTTAAGTGGTAAGATATTCATAATTCTGNNCATATTGGTTATCTTTTGCCAAATAT]




>consensus_8102#1
AATCCTCAGACAATGTTCATGTTTTAAGTTTTTTTATCTTATACATCTATTTCAGTTATG
TATATGACTAATTAACTGATAAATTTTCTTCCTCTTTTTATATTCATATCATCAGGCTAA
TAATGAATCTATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATT
ATCGAAAGAGTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGAT
GAATTTAAAAGATTCAGATTTTATTCAAGAGTTGAATGACTGTTTGGTAAGTCGTGAAAT
CCCTTTATATGTACCTAATCTTTAATGATTGTATGAGAAAATTATCTGCACTAAGTTCAC
GGACAATTTATTAAACCTGATGCAATTCTCCAAGCAACAAATTTTTTCTAGAACCCTAAC
TTGTTTTCCAGGTCCAATGTTAAAATCTCTGTGTTTAGAATATTTCATCCAGTTTGGTAT
ATTAAAGCTACAGTGCTAATGTTACAGTCGTTAAGTGGTAAGATATTCATAATTCTGNNC
ATATTGGTTATCTTTTGCCAAATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8102#0      ACGGTACTTCAAGCTATTCAATCAATGATGTTCCCCAACTATCATAAATTCCTAACTACG 60
consensus_8102#1      ------------------------------------------------------------
                                                                                  

consensus_8102#0      AGTTTCCGTAGTTACAGTGCCAAGAAACTGCTTCCGAGGTACGATATAGTAATTGTCGGT 120
consensus_8102#1      ------------------------------------------------------------
                                                                                  

consensus_8102#0      GGTGGGATGGTTGGATTTGGTTTGGCTGCCGTTGCAGCAGCCTCCAAATTTCTCGGCGAG 180
consensus_8102#1      ------------------------------------------------------------
                                                                                  

consensus_8102#0      AAAAATATTTTATTGCTAGAAAGTTCTGGTAAAAAAACGTATCAACGTAAAGAAGAATAT 240
consensus_8102#1      ------------------------------------------------------------
                                                                                  

consensus_8102#0      GAAAATCGTGTCGTTGCTCTTAACGACCTTTCGGTAAACATGCTGAAAAATATTGGTGTC 300
consensus_8102#1      ------------------------------------------------------------
                                                                                  

consensus_8102#0      TGGGAATTTATTCAGTCATTCCGTTCTCAGCCTGTAAATAAAATGAAAGTATGGGAAACA 360
consensus_8102#1      ------------------------------------------------------------
                                                                                  

consensus_8102#0      AAGTCAAACCTTTACTTAACATTTCAACGCAATCCCTTGGCATATATAGTAGAAAATGAT 420
consensus_8102#1      ------------------------------------------------------------
                                                                                  

consensus_8102#0      TTAGTTATTGAATCACTTCGCAATCATCTGGAATCGATTAATAATTCTCCAAATGTGACA 480
consensus_8102#1      ------------------------------------------------------------
                                                                                  

consensus_8102#0      ATATTATATGAAGCACAAGCTGAAAACATCAGCTACCTTCTCGAGATCATCCAGAACATT 540
consensus_8102#1      ------------------------------------------------------------
                                                                                  

consensus_8102#0      AGTCGTTTGNCGTCACAAAGGAANAGATAAACGGGAAACTGTTGAAACAGATCTACTTGT 600
consensus_8102#1      -------------------------------------------------AATCCTCA-GA 10
                                                                        ***  *  * 

consensus_8102#0      TGGTGCCGATGGGTTCAATTCACTTGTCCGTAAAACAGCTAATATTCATACAATTGGTTG 660
consensus_8102#1      CAATGTTCATGTTTTAAGTTTTTTTATCTTATACATCTATTTCAGTTATGTATATGACT- 69
                         **   ***  ** * **   ** **    * *    *   * * **  *  **  * 

consensus_8102#0      GAATCATAATCAAAAAGCAATTGTAGCAACTTTAAAATTGGAACA---GGCTAATAATGA 717
consensus_8102#1      -AAT--TAACTGATAAATTTTCTTCCTCTTTTTATATTCATATCATCAGGCTAATAATGA 126
                       ***  ***   * **    *  *      **** * *   * **   ************

consensus_8102#0      ATCTATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATTATCGAA 777
consensus_8102#1      ATCTATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATTATCGAA 186
                      ************************************************************

consensus_8102#0      AGAGTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGATGAATTT 837
consensus_8102#1      AGAGTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGATGAATTT 246
                      ************************************************************

consensus_8102#0      AAAAGATTCAGATTNNTATTCAGAGTTGAATGACTGTTTGACTAAACCTAGTGAATCGAT 897
consensus_8102#1      AAAAGATTCAGATTTTATTCAAGAGTTGAATGACTGTTTGG-TAAGTC--GTGAAATCCC 303
                      **************    *  *******************  ***  *  *****     

consensus_8102#0      GTCACCAATAGGTACAGTTCTCAGTAAC-GTGGGACAATGTTTTGCTGGTGTTGTTGATT 956
consensus_8102#1      TTTAT--ATGTACCTAATCTTTAATGATTGTATGAGAAAATTAT-CTG----CACTAAGT 356
                       * *   **      * *  * * * *  **  ** **  ** * ***       * * *

consensus_8102#0      ACTTTGGTAAATCAAATAAATCTACAGAAAATGAAAGTGAATCCAGCTCATTTTCCAACA 1016
consensus_8102#1      -TCACGGACAATTTATTAAACCTGATGCAATTCTCCAAGCAACAAATT--TTTTCTAGAA 413
                           **  ***  * **** **   * ** *      * * * *  *  ***** *  *

consensus_8102#0      CCATCAGTAGTATCAATCCAACCAAATACGAAAAGGGCTTGTTTCCCTCTAGGTTTTCAA 1076
consensus_8102#1      CCCTAACTTGTTTT--CCAGGTCCAATGTTAAAA---TCTCTGTGTTTAGAATATTTCAT 468
                      ** * * * ** *    *    * ***   ****     * * *   *  *   ***** 

consensus_8102#0      CATGCAATCATCTATTT--GCCATAATTCTAAACTATCATATTTAATAAATAAGTTTATC 1134
consensus_8102#1      CCAGTT-TGGTATATTAAAGCTACAGTGCTAA--TGTTACAGTCGTTAAGTGG---TA-- 520
                      *  *   *  * ****   ** * * * ****  * * * * *   *** *     **  

consensus_8102#0      ACAAATATTCGTGGAACTGGAATGAGTACTATTCAATCTAGTCAAGTATTAAAGGAATTT 1194
consensus_8102#1      --AGATATTCATAATTCTGNNCATATTGGTTATC--TTTTGCCAAATAT----------- 565
                        * ****** *    ***     * *  *  **  * * * *** ***           

consensus_8102#0      TTGATGGGAGTNCGCTGTCACTGGACAAATCGGAACATCACAATCCAAAACCCACTTATT 1254
consensus_8102#1      ------------------------------------------------------------
                                                                                  

consensus_8102#0      GCTTGTAGTTG 1265
consensus_8102#1      -----------