cluster # 8108

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Schistosoma mansoni
cluster # 8108 cluster # 8108 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8108#0 length = 643 sequences # 5

consensus_8108#1 length = 569 sequences # 1

consensusID : consensus_8108#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 643
fasta sequence

                              [CAGGCCAANAATTTGGCACGAGGTTCTGCGTTACATCTCGGGAATGAAACAACTGTATAATTATATAGCGTCGCCAGATGATAAATACCCTTTCTTTCGGACGAAAATGGCTTTCTTGGGCGGGTATACTGTCAGTTTGATAGCTTCTGTGCTCGAATATGCCAAAGCGCATGAATTGGGTTTGAGTTTAAATAGTACGGGACTACAGTGTATTAGATACGTAGTCACTGGAACGGCTGCTGCAATATGTCACTCGTCTGTTTCCTTTATATCAGCAAAAGCTACAGGCCGATCCGATAGCTGGGTGAATCACGCACTCGGGGGAGCTGCTAGTGGTTTAATCTGTACATGGAATCGTTCTATGACGATACGTGCTACTACGTGTATCGGATTTGCAATAATATCAGCTTTGGGTAAATATAGTGTGGAGTTCAGACTACAGCATCCTGACTGGCATGTTCCAGTAGTCGGCGAGTACAATCCATCACCATATGTATCTCTTAATCAACGATGGATGTATAAAGGTGCAAGACAACAAGAAGAAGAGCTGGAGAAGCATGTATAATAATCTAGCACTTTTAAATTTGTGACCATATGTTTACTTCCGATTGTTACAAATTAGTTAATAAATAATAGAAACTGT]

[+] EMBL CD081075             [CAGGCCAANAATTTGGCACGAGGTTCTGCGTTACATCTCGGGAATGAAACAACTGTATAATTATATAGCGTCGCCAGATGATAAATACCCTTTCTTTCGGACGAAAATGGCTTTCTTGGGCGGGTATACTGTCAGTTTGATAGCTTCTGTGCTCGAATATGCCAAAGCGCATGAATTGGGTTTGAGTTTAAATAGTACGGGACTACAGTGTATTAGATACGTAGTCACTGGAACGGCTGCTGCAATATGTCACTCGTCTGTTTCCTTTATATCAGCAAAAGCTACAGGCCGATCCGATAGCTGGGTGAATCACGCACTCGGGGGAGCTGCTAGTGGTTTAATCTGTACATGGAATCGTTCTATGACGATACGTGCTACTACGTGTATCGGATTTGCAATAATATCAGCTTTGGGTAAATATAGTGTGGAGTTCAGACTACAGCATCCTGACTGGCATGTTCCAGTAGTCGGCGAGTACAATCCATCACCATATGTATCTCTTAATCAACGATGGATGTATAAAGGTGCAAGACAACAAGAAGAAGAGCTGGAGAAGCATGTATAATAATCTAGCACTTTTAAATTTGTGACCATATGTTTACTTCCGATTGTTACAAATTAGTTAATAAATAATAGAAACTG ]
[-] EMBL CD074897             [                        tnTGCGTTACATCTCGGGAATGAAACAACTGTATAATTATATAGCGTCGCCAGATGATAAATACCCTTTCTTTCGGACGAAAATGGCTTTCTTGGGCGGGTATACTGTCAGTTTGATAGCTTCTGTGCTCGAATATGCCAAAGCGCATGAATTGGGTTTGAGTTTAAATAGTACGGGACTACAGTGTATTAGATACGTAGTCACTGGAACGGCTGCTGCAATATGTCACTCGTCTGTTTCCTTTATATCAGCAAAAGCTACAGGCCGATCCGATAGCTGGGTGAATCACGCACTCGGGGGAGCTGCTAGTGGTTTAATCTGTACATGGAATCGTTCTATGACGATACGTGCTACTACGTGTATCGGATTTGCAATAATATCAGCTTTGGGTAAATATAGTGTGGAGTTCAGACTACAGCATCCTGACTGGCATGTTCCAGTAGTCGGCGAGTACAATCCATCACCATATGTATCTCTTAATCAACGATGGATGTATAAAGGTGCAAGACAACAAGAAGAAGAGCTGGAGAAGCATGTATAATAATCTAGCACTTTTAAATTTGTGACCATATGTTTACTTCCGATTGTTACAAATTAGTTAATAAATAATAGAAACTGT]
[-] EMBL CD074747             [                                            TGAAACAACTGTATAATTATATAGCGTCGCCAGATGATAAATACCCTTTCTTTCGGACGAAAATGGCTTTCTTGGGCGGGTATACTGTCAGTTTGATAGCTTCTGTGCTCGAATATGCCAAAGCGCATGAATTGGGTTTGAGTTTAAATAGTACGGGACTACAGTGTATTAGATACGTAGTCACTGGAACGGCTGCTGCAATATGTCACTCGTCTGTTTCCTTTATATCAGCAAAAGCTACAGGCCGATCCGATAGCTGGGTGAATCACGCACTCGGGGGAGCTGCTAGTGGTTTAATCTGTACATGGAATCGTTCTATGACGATACGTGCTACTACGTGTATCGGATTTGCAATAATATCAGCTTTGGGTAAATATAGTGTGGAGTTCAGACTACAGCATCCTGACTGGCATGTTCCAGTAGTCGGCGAGTACAATCCATCCCCATATGTATCTCTTAATCAACGATGGATGTATAAAGGTGCAAGACAACAAGAAGAAGAGCTGGAGAAGCATGTATAATAATCTAGCACTTTTAAATTTGTGACCATATGTTTACTTCCGATTGTTACAAATTAGTTAATAAATAATAG       ]
[+] EMBL CD135160             [                                                                                                TCGGACGAAAATGGCTTTCTTGGGCGGGTATACTGTCAGTTTGATAGCTTCTGTGCTCGAATATGCCAAAGCGCATGAATTGGGTTTGAGTTTAAATAGTACGGGACTACAGTGTATTAGATACGTAGTCACTGGAACGGCTGCTGCAATATGTCACTCGTCTGTTTCCTTTATATCAGCAAAAGCTACAGGCCGATCCGATAGCTGGGTGAATCACGCACTCGGGGGAGCTGCTAGTGGTTTAATCTGTACATGGAATCGTTCTATGACGATACGTGCTACTACGTGTATCGGATTTGCAATAATATCAGCTTTGGG                                                                                                                                                                                                                                     ]
[-] EMBL CD145425             [                                                                                                                                              GCTTCTGTGCTCGAATATGCCAAAGCGCATGAATTGGGTTTGAGTTTAAATAGTACGGGACTACAGTGTATTAGATACGTAGTCACTGGAACGGCTGCTGCAATATGTCACTCGTCTGTTTCCTTTATATCAGCAAAAGCTACAGGCCGATCCGATAGCTGGGTGAATCACGCACTCGGGGGAGCTGCTAGTGGTTTAATCTGTACATGGAATCGTTCTATGACGATACGTGCTACTACGTGTATCGGATTTGCAATAATATCAGCTTTGGGTAAATATAGTGTGGAGTTCAGACTACAGCATCCTGACTGGCATGTTCCAGTAGTCGGCGAGTACAATCCATCACCATATGTATCTCTTAATCAACGATGGATGTATAAA                                                                                                                        ]




>consensus_8108#0
CAGGCCAANAATTTGGCACGAGGTTCTGCGTTACATCTCGGGAATGAAACAACTGTATAA
TTATATAGCGTCGCCAGATGATAAATACCCTTTCTTTCGGACGAAAATGGCTTTCTTGGG
CGGGTATACTGTCAGTTTGATAGCTTCTGTGCTCGAATATGCCAAAGCGCATGAATTGGG
TTTGAGTTTAAATAGTACGGGACTACAGTGTATTAGATACGTAGTCACTGGAACGGCTGC
TGCAATATGTCACTCGTCTGTTTCCTTTATATCAGCAAAAGCTACAGGCCGATCCGATAG
CTGGGTGAATCACGCACTCGGGGGAGCTGCTAGTGGTTTAATCTGTACATGGAATCGTTC
TATGACGATACGTGCTACTACGTGTATCGGATTTGCAATAATATCAGCTTTGGGTAAATA
TAGTGTGGAGTTCAGACTACAGCATCCTGACTGGCATGTTCCAGTAGTCGGCGAGTACAA
TCCATCACCATATGTATCTCTTAATCAACGATGGATGTATAAAGGTGCAAGACAACAAGA
AGAAGAGCTGGAGAAGCATGTATAATAATCTAGCACTTTTAAATTTGTGACCATATGTTT
ACTTCCGATTGTTACAAATTAGTTAATAAATAATAGAAACTGT

consensusID : consensus_8108#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence

                              [CCTCGAGGCCAAAAATTCGGCACGAGGCGGGAATGAAACAACTGTATAATTATATAGCGTCGCCAGATGATGGCTTTCTTGGGCGGGTATACTGTCAGTTTGATAGCTTCTGTGCTCGAATATGCCAAAGCGCATGAATTGGGTTTGAGTTTAAATAGTACGGGACTACAGTGTATTAGATACGTAGTCACTGGAACGGCTGCTGCAATANNNNNNNNNNNNTGTTTCCTTTATATCAGCAAAAGCTACAGGCCGATCCGATAGCTGGGTGAATCACGCACTCGGGGGAGCTGCTAGTGGTTTAATCTGTACATGGAATCGTTCTATGACGATACGTGCTACTACGTGTATCGGATTTGCAATAATATNNNNNNNNNGTAAATATAGTGTGGAGTTCAGACTACAGCATCCTGACTGGCATGTTCCAGTAGTCGGCGAGTACAATCCATCACCATATGTATCTCTTAATCAACGATGGATGTATAAAGGTGCAAGACAACAAGAAGAAGAGCTGGAATTTGTGACCATATGTTTACTTCCGATTGTTACAAATTAGTTAATAAATAATA]

[+] EMBL CD080915             [CCTCGAGGCCAAAAATTCGGCACGAGGCGGGAATGAAACAACTGTATAATTATATAGCGTCGCCAGATGATGGCTTTCTTGGGCGGGTATACTGTCAGTTTGATAGCTTCTGTGCTCGAATATGCCAAAGCGCATGAATTGGGTTTGAGTTTAAATAGTACGGGACTACAGTGTATTAGATACGTAGTCACTGGAACGGCTGCTGCAATANNNNNNNNNNNNTGTTTCCTTTATATCAGCAAAAGCTACAGGCCGATCCGATAGCTGGGTGAATCACGCACTCGGGGGAGCTGCTAGTGGTTTAATCTGTACATGGAATCGTTCTATGACGATACGTGCTACTACGTGTATCGGATTTGCAATAATATNNNNNNNNNGTAAATATAGTGTGGAGTTCAGACTACAGCATCCTGACTGGCATGTTCCAGTAGTCGGCGAGTACAATCCATCACCATATGTATCTCTTAATCAACGATGGATGTATAAAGGTGCAAGACAACAAGAAGAAGAGCTGGAATTTGTGACCATATGTTTACTTCCGATTGTTACAAATTAGTTAATAAATAATA]




>consensus_8108#1
CCTCGAGGCCAAAAATTCGGCACGAGGCGGGAATGAAACAACTGTATAATTATATAGCGT
CGCCAGATGATGGCTTTCTTGGGCGGGTATACTGTCAGTTTGATAGCTTCTGTGCTCGAA
TATGCCAAAGCGCATGAATTGGGTTTGAGTTTAAATAGTACGGGACTACAGTGTATTAGA
TACGTAGTCACTGGAACGGCTGCTGCAATANNNNNNNNNNNNTGTTTCCTTTATATCAGC
AAAAGCTACAGGCCGATCCGATAGCTGGGTGAATCACGCACTCGGGGGAGCTGCTAGTGG
TTTAATCTGTACATGGAATCGTTCTATGACGATACGTGCTACTACGTGTATCGGATTTGC
AATAATATNNNNNNNNNGTAAATATAGTGTGGAGTTCAGACTACAGCATCCTGACTGGCA
TGTTCCAGTAGTCGGCGAGTACAATCCATCACCATATGTATCTCTTAATCAACGATGGAT
GTATAAAGGTGCAAGACAACAAGAAGAAGAGCTGGAATTTGTGACCATATGTTTACTTCC
GATTGTTACAAATTAGTTAATAAATAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8108#0      ----CAGGCCAANAATTTGGCACGAGGTTCTGCGTTACATCTCGGGAATGAAACAACTGT 56
consensus_8108#1      CCTCGAGGCCAAAAATTCGGCACGAGG---------------CGGGAATGAAACAACTGT 45
                           ******* **** *********               ******************

consensus_8108#0      ATAATTATATAGCGTCGCCAGATGATAAATACCCTTTCTTTCGGACGAAAATGGCTTTCT 116
consensus_8108#1      ATAATTATATAGCGTCGCCAGATGAT--------------------------GGCTTTCT 79
                      **************************                          ********

consensus_8108#0      TGGGCGGGTATACTGTCAGTTTGATAGCTTCTGTGCTCGAATATGCCAAAGCGCATGAAT 176
consensus_8108#1      TGGGCGGGTATACTGTCAGTTTGATAGCTTCTGTGCTCGAATATGCCAAAGCGCATGAAT 139
                      ************************************************************

consensus_8108#0      TGGGTTTGAGTTTAAATAGTACGGGACTACAGTGTATTAGATACGTAGTCACTGGAACGG 236
consensus_8108#1      TGGGTTTGAGTTTAAATAGTACGGGACTACAGTGTATTAGATACGTAGTCACTGGAACGG 199
                      ************************************************************

consensus_8108#0      CTGCTGCAATATGTCACTCGTCT-GTTTCCTTTATATCAGCAAAAGCTACAGGCCGATCC 295
consensus_8108#1      CTGCTGCAATANNNNNNNNNNNNTGTTTCCTTTATATCAGCAAAAGCTACAGGCCGATCC 259
                      ***********             ************************************

consensus_8108#0      GATAGCTGGGTGAATCACGCACTCGGGGGAGCTGCTAGTGGTTTAATCTGTACATGGAAT 355
consensus_8108#1      GATAGCTGGGTGAATCACGCACTCGGGGGAGCTGCTAGTGGTTTAATCTGTACATGGAAT 319
                      ************************************************************

consensus_8108#0      CGTTCTATGACGATACGTGCTACTACGTGTATCGGATTTGCAATAATATCAGCTTTGGGT 415
consensus_8108#1      CGTTCTATGACGATACGTGCTACTACGTGTATCGGATTTGCAATAATATNNNNNNNNNGT 379
                      *************************************************         **

consensus_8108#0      AAATATAGTGTGGAGTTCAGACTACAGCATCCTGACTGGCATGTTCCAGTAGTCGGCGAG 475
consensus_8108#1      AAATATAGTGTGGAGTTCAGACTACAGCATCCTGACTGGCATGTTCCAGTAGTCGGCGAG 439
                      ************************************************************

consensus_8108#0      TACAATCCATCACCATATGTATCTCTTAATCAACGATGGATGTATAAAGGTGCAAGACAA 535
consensus_8108#1      TACAATCCATCACCATATGTATCTCTTAATCAACGATGGATGTATAAAGGTGCAAGACAA 499
                      ************************************************************

consensus_8108#0      CAAGAAGAAGAGCTGGAGAAGCATGTATAATAATCTAGCACTTTTAAATTTGTGACCATA 595
consensus_8108#1      CAAGAAGAAGAGCTGGA------------------------------ATTTGTGACCATA 529
                      *****************                              *************

consensus_8108#0      TGTTTACTTCCGATTGTTACAAATTAGTTAATAAATAATAGAAACTGT 643
consensus_8108#1      TGTTTACTTCCGATTGTTACAAATTAGTTAATAAATAATA-------- 569
                      ****************************************