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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1002 fasta sequence
[AAGTTTTAAAGTAATCAAAATTTGCATTGAAAAACTTTATATAAGGTTAAATAAACTTTAATATATTTAGTCAGTCAATGACAAGTAATTTCATTAAATACTTAAGAAAACGATCATCTTGCACAATATCTTCATGTGAAGTTTGTTCCAATACAGCTAGATTAACATAGTCCCATTTATTACAGACAGATAAACTTTTTAACGGTACAGTACCATCACCATCACCATATTTTAATGTTGGTATTTGATTGGGAAAAGCAGAACGATATGGTCCTGGAGTTTTGAAAATCATCTGTGATATTGTTGGAATGTTAATACTGTAAATACAGTAAACATCAATATCAGTAGGCCTTTCATATGGATCAAATACACTTTTAGTTTCGTTCATGATCGCATAAGCTTGAGGAAACGAAATATCATCAAAAAGTGCTTTCAAGTCATGTGCTGAATAATTTTTATTCGGAGTTATAATTAACTTCTCATTTGATGGCCATACACGTGGATCTGGTAGAAGAAATGCCATTGCAGGAAATGATCTTTGAATATCACGAAATGCTAATGGAGAACGAAATGGAATTCCTAAGTTATGACCACAGGTTTCAGCATATAGACTTTCAACAGATCCACCAAAAGGAGCTGACACAGATATAAATCCCTTGATATATTTATATTTCCATGATTTATCCTGCTGTTTTAAAANATACATTGAGTACAATGATCCTAAACTGTGGCCTAATAAGTAGATTGGACGCTTTGCACCATTTTCATAGGTCTCTTCAATCAGTTGCTTTAATTTGATGAAATATTTTGAATTTTCATTTGGCGCTTTGCGGAAATCATACGGTGCAGCACGCAATGTTTTATTTCGCACAAAAAATTTGTCATTTGTTAAACTTTGAACAATTAACTTCATATAACTTGTAAATAGATATTTATCTTCACTTAAATATTCACTAGCCCAAGTATCACCCCAACCAGGGAATTCAACATTACACAGACCTC]
[-] EMBL CD187449 [AAGTTTTAAAGTAATCAAAATTTGCATTGAAAAACTTTATATAAGGTTAAATAAACTTTAATATATTTAGTCAGTCAATGACAAGTAATTTCATTAAATACTTAAGAAAACGATCATCTTGCGCAATATCTTCATGTGAAGTTTGTTCCAATACAGCTAGATTAACATAGTCCCATTTATTACAGACAGATAAACTTTTTAACGGTACAGTACCATCACCATCACCATATTTTAATTTTGGTATTTGATTGGGAAAAGCAGAACGATATGGTCCTGGAGTTTTGAAAATCATCTGTGATATTGTTGGAATGTTAATACTGTAAATACAGTAAACATCAATATCAGTAGGCCTTTCATATGGATCAAATACACTTTTAGTTTCGTTCATGATCGCATAAGCTTGAGGAAACGAAATATCATCAAAAAGTGCTTTCAAGTCATGTGCTGAATAATTTTTATTCGGAGTTATAA ]
[-] EMBL CD079147 [ AGGTTAAATAAACTNTAATATATTTAGTCAGTCAATGACAAGTAATTTCATTAAATACTTAAGANAACGATCATCTTGCACAATATCTTCATGTGAAGTTTGTTCCAATACAGCTAGATTAACATAGTCCCATTTATTACAGACAGATAAACTTTTTAACGGTACAGTACCATCACCATCACCATATTTTAATGTTGGTATTTGATTGGGAAAAGCAGAACGATATGGTCCTGGAGTTTTGAAAATCATCTGTGATATTGTTGGAATGTTAATACTGTAAATACAGTAAACATCAATATCAGTAGGCCTTTCATATGGATCAAATACACTTTTAGTTTCGTTCATGATCGCATAAGCTTGAGGAAACGAAATATCATCAAAAAGTGCTTTCAAGTCATGTGCTGAATAATTTTTATTCGGAGTTATAATTAACTTCTCATTTGATGGCCATACACGTGGATCTGGTAGAAGAAATGCCATTGCAGGAAATGATCTTTGAATATCACGAAATGCTAATGGAGAACGAAATGGAATTCCTAAGTTATGACCACAGGTTTCAGCATATAGACTTTCAACAGATCCACCAAAAGGAGCTGACACAGATATAAATCCCTTGATATATTTATATTTCC ]
[+] EMBL CD074741 [ TAAACTTTAATATATTTAGTCAGTCAATGACAAGTAATTTCATTAAATACTTAAGAAAACGATCATCTTGCACAATATCTTCATGTGAAGTTTGTTCCAATACAGCTAGATTAACATAGTCCCATTTATTACAGACAGATAAACTTTTTAACGGTACAGTACCATCACCATCACCATATTTTAATGTTGGTATTTGATTGGGAAAAGCAGAACGATATGGTCCTGGAGTTTTGAAAATCATCTGTGATAT ]
[-] EMBL BF936207 [ TACAGCTAGATTAACATAGTCCCATTTATTACAGACAGATAAACTTTTTAACGGTACAGTACCATCACCATCACCATATTTTAATGTTGGTATTTGATTGGGAAAAGCAGAACGATATGGTCCTGGAGTTTTGAAAATCATCTGTGATATTGTTGGAATGTTAATACTGTAAATACAGTAAACATCAATATCAGTAGGCCTTTCATATGGATCAAATACACTTTTAGTTTCGTTCATGATCGCATAAGCTTGAGGAAACGAAATATCATCAAAAAGTGCTTTCAAGTCATGTGCTGAATAATTTTTATTCGGAGTTATAATTAACTTCTCATTTGATGGCCATACACGTGGATCTGGTAGAAGAAATGCCATTGCAGGAAATGATCTTTGAATATCACGAAATGCTAATGGAGAACGAAATGGAATTCCTAAGTTATGACCACAGGTTTCAGCATATAGACTTTCAACAGATCCACCAAAAGGAGCTGACACAGATATAAATCCCTTGATATATTTATATTTCCATGATTTATCC ]
[-] EMBL CD083531 [ AATTCCTAAGTTATGACCACAGGTTTCAGCATATAGACTTTCAACAGATCCACCAAAAGGAGCTGACACAGATATAAATCCCTTGATATATTTATATTTCCATGATTTATCCTGCTGTTTTAAAANATACATTGAGTACAATGATCCTAAACTGTGGCCTAATAAGTAGATTGGACGCTTTGCACCATTTTCATAGGTCTCTTCAATCAGTTGCTTTAATTTGATGAAATATTTTGAATTTTCATTTGGCGCTTTGCGGAAATCATACGGTGCAGCACGCAATGTTTTATTTCGCACAAAAAATTTGTCATTTGTTAAACTTTGAACAATTAACTTCATATAACTTGTAAATAGATATTTATCTTCACTTAAATATTCACTAGCCCAAGTATCACCCCAACCAGGGAATTCAACATTACACAGACCTC]
consensusID : consensus_8111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence
[TTAAAAAATACATTGAGTACAATGATCCTAAACTGTGGCNTAATAAGTAGATTGGACGCTTTGCACCATTTTCATAGGTCTCTTCAATCAGTTGCTTTAATTTGATGAAATATTTTGAATTTTCATTTGGCGCTTTGCGGAAATCATACGGTGCAGCACGCAATGTTCTTTGAACAATTAACTTCATATAACTTGTAAATAGATATTTATCTTCACTTAAATATTCACTAGCCCAAGTATCACCCCAACCAGGGAATTCAACATTACACAGACCTCTATCTCTCGTTTGTTTTGTTTTCGGATCATAAATTAATCCNNNNNNNNNNNNNNNNTTTCCGGAAGAAGAAAGTACAATAAGTTAATCCAAATTGAAAATGGCTTCGTATGTAGTTGTTTGCCAGTTGGTTGACATAGTACTTGTGTTCCACCGATTCCGTGTATTAGTATAATAGGATATCGAATATTTTCATCCTTGACTTTTTNNNNNGTTATATCGTTTAAATGATACGAAGGTGATGTCAACGCTCCATTTAAAAAAATTAACATTAGTTTCATAAATATAACCATGTTAGTTACTATTTAAATCCCATTGAATACTTATACATTGTTCTGAATAATATTGACATTGAGATTTCTTTAAATGTGAG]
[-] EMBL CD080909 [TTAAAAAATACATTGAGTACAATGATCCTAAACTGTGGCNTAATAAGTAGATTGGACGCTTTGCACCATTTTCATAGGTCTCTTCAATCAGTTGCTTTAATTTGATGAAATATTTTGAATTTTCATTTGGCGCTTTGCGGAAATCATACGGTGCAGCACGCAATGTTCTTTGAACAATTAACTTCATATAACTTGTAAATAGATATTTATCTTCACTTAAATATTCACTAGCCCAAGTATCACCCCAACCAGGGAATTCAACATTACACAGACCTCTATCTCTCGTTTGTTTTGTTTTCGGATCATAAATTAATCCNNNNNNNNNNNNNNNNTTTCCGGAAGAAGAAAGTACAATAAGTTAATCCAAATTGAAAATGGCTTCGTATGTAGTTGTTTGCCAGTTGGTTGACATAGTACTTGTGTTCCACCGATTCCGTGTATTAGTATAATAGGATATCGAATATTTTCATCCTTGACTTTTTNNNNNGTTATATCGTTTAAATGATACGAAGGTGATGTCAACGCTCCATTTAAAAAAATTAACATTAGTTTCATAAATATAACCATGTTAGTTACTATTTAAATCCCATTGAATACTTATACATTGTTCTGAATAATATTGACATTGAGATTTCTTTAAATGTGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8111#0 AAGTTTTAAAGTAATCAAAATTTGCATTGAAAAACTTTATATAAGGTTAAATAAACTTTA 60
consensus_8111#1 ------------------------------------------------------------
consensus_8111#0 ATATATTTAGTCAGTCAATGACAAGTAATTTCATTAAATACTTAAGAAAACGATCATCTT 120
consensus_8111#1 ------------------------------------------------------------
consensus_8111#0 GCACAATATCTTCATGTGAAGTTTGTTCCAATACAGCTAGATTAACATAGTCCCATTTAT 180
consensus_8111#1 -------------------------TTAAAAAATACATTGAGTACAATGATCCTA--AAC 33
** ** * * * ** ** ** *** * *
consensus_8111#0 TACAGACAGATAAACTTTTTAACGGTACAGTACCATCACCATCACCATATTTTAATGTTG 240
consensus_8111#1 TGTGGCNTAATAAGTAGATTGGACGCTTTGCACCATTTTCATAGGTCTCTTCAATCAGTT 93
* * **** ** * * ***** *** * ** * *
consensus_8111#0 GTATTTGATTGGGAAAAGCAGAACGATATGGTCCTGGAGTTTTGAAAATCATCTGTGATA 300
consensus_8111#1 GC-TTTAATTTGATGAAATA-----------TTTTGAATTT-------TCATTTGGCGCT 134
* *** *** * ** * * ** * ** **** **
consensus_8111#0 TTGTTGGAATGTTAATACTGTAAATACAGTAAACATCAATATCAGTAGGCCTTTCATATG 360
consensus_8111#1 TTGCGGAAATCATACGGTGCAGCACGCAATGTTCTTTGA--ACAATTAACTTCATATAAC 192
*** * *** ** * ** * * * * ** * * * ***
consensus_8111#0 GATCAAATACACTTTTAGTTTCGTTCATGATCGCATAAGCTTGAGGAAACGAAATATCAT 420
consensus_8111#1 TTGTAAATAGATATTTATCTTCACTTAAATATTCACTAGCCCAAGTA-------TCACCC 245
***** * **** *** * * ** *** ** * * *
consensus_8111#0 CAAAAAGTGCTTTCAAGTCATGTGCTGAATAATTTTTATTCGGAGTTATAATTAACTTCT 480
consensus_8111#1 CAACCAGGGAATTCAA--CAT-TACACAG--ACCTCTATCTCTCGTT--------TGTTT 292
*** ** * ***** *** * * * * * *** *** * *
consensus_8111#0 CATTTGATGGCCATACACGTGGATCTGGTAGAAGAAATGCCATTGCAGGAAATGATCTTT 540
consensus_8111#1 TGTTTTCGGATCATAAA--TTAATCCNNNNNNNNNNNNNNNNTTTCCGGAAG-------A 343
*** * **** * * *** ** * ****
consensus_8111#0 GAATATCACGAAATGCTAATGGAGAACGAAATGGAATTCCTAAGTTAT-GACCACAGGTT 599
consensus_8111#1 AGAAAGTACAATAAGTTAATCCAAATTGAAAATGGCTTCGTATGTAGTTGTTTGCCAGTT 403
* * ** * * * **** * * **** * *** ** ** * * * ***
consensus_8111#0 TCAGCATATAGACTTTCAACAGATCCACCAAAAGGAGCTGACACAGATATAAATCCCTTG 659
consensus_8111#1 GGTTGACATAGTACTT---GTGTTCCACCGAT---------TCCGTGTATTAGTATAATA 451
* **** ** * ****** * * *** * * *
consensus_8111#0 ATATATTTA-TATTTCCATGATTTATCCTGCTGTTTTAAAANATACATTGAGTACAATGA 718
consensus_8111#1 GGATATCGAATATTTTCATCCTTGA-----CTTTTTNNNNNGTTATATCGTTTA-AATGA 505
**** * ***** *** ** * ** *** ** ** * ** *****
consensus_8111#0 TCCTAAACTGTGGCCTAATAAGTAGATTGGACGCTTTGCACCATTTTCATAGGTCTCTTC 778
consensus_8111#1 TACGAAGGTGATGTCAACGCTCCATTTAAAAAAATTAACATTAGTTTCATAAATATAACC 565
* * ** ** * * * * * * ** ** * ******* * * *
consensus_8111#0 A-ATCAGTTGCTTTAATTTGATGAAATATTTTGAATTTTCATTTGGCGCTTTGCGGAAAT 837
consensus_8111#1 ATGTTAGTTACT---ATTTAA---ATCCCATTGAATACTTATACATTGTTCTG----AAT 615
* * **** ** **** * * ****** * ** * * ** ***
consensus_8111#0 CATACGGTGCAGCACGCAATGTTTTATTTCGCACAAAAAATTTGTCATTTGTTAAACTTT 897
consensus_8111#1 AATATTG-ACATTGAGATTTCTTTAAATGTGAG--------------------------- 647
*** * ** * * *** * * *
consensus_8111#0 GAACAATTAACTTCATATAACTTGTAAATAGATATTTATCTTCACTTAAATATTCACTAG 957
consensus_8111#1 ------------------------------------------------------------
consensus_8111#0 CCCAAGTATCACCCCAACCAGGGAATTCAACATTACACAGACCTC 1002
consensus_8111#1 ---------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||