cluster # 8112

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Schistosoma mansoni
cluster # 8112 cluster # 8112 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8112#0 length = 610 sequences # 5

consensus_8112#1 length = 447 sequences # 1

consensusID : consensus_8112#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 610
fasta sequence

                              [GATCGACGACATTTGATTTGAGGTCACTAGCGTTTGATTCTTGTGAAACAGGTTGCTTG-AATTTTTTTGGAACCTCATTGGCAGATAATGGATCATTTGGCACCACTGTATCCACTATACTGCTCGCTTCGTTGCTCGTTTCTTCGTGGGCTGGTACTGCAGCAATTTCATGAGCATTTGACATGGCATCATGTTGCTGAGAACTGGGAGCATCACTGTTCGGACCTGCTAATTCAGGGATAGTGGTGTTTGAATCCACTACCGTGCACGTTTCGGAAATGGATAGTGCTGGACAACCGGGCGTCTCTTGAGAGACTGCTGTTTCGTTTGAGATGCGGCTGATCGAGGATTCATCGAGGCTGCGATCATTTTCTAGCTCTGCGTGAAATTCAGTGATTAATCCATTCACTTCCGACGCATATGCAAAGCATTGGTGATCCAGAAGCTGTGTGCGTAGTTTGACCATGAACTCCAAATGTCGGTCAATTATCAACTGCAATCGGTCAGAAGGGAGCGTCATTTTTCACTTTTTTGTCCCCGTCGCCAATTGTTATGCTTAAGCTAAATCGA-TTCCGCGGTAACGAACGAAAACCAATGACACGATAAGCTA]

[+] EMBL CD162450             [GATCGACGACATTTGATTAGAGGTCACTAGCGTTAGACTCTTGTGAAACAGGTTGCTTG AATTTTTTTGGAACCTCATTGGCAGATAATGGATCATTTGGCACCACTGTATCCACTATACTGCTCGCTTCGTTGCTCGTTTCTTCGTGGGCTGGTACTGCAGCAATTTCATGAGCATTTGACATGGCATCATGTTGCTGAGAACTGGGAGCATCACTGTCCGGACCTGCTAATTCAGGGATAGTGGTGTTTGAATCCACTACCGTGCACGTTTCGGAAATGGATAGTGCTGGACAACCGGGCGTCTCTTGAGAGTCTGCTGTTTCGTTTGAGATGCGGCTGATCGAGGATTCATCGAGGCTGCGATCATTTTCTAGCTCTGCGTGAAATTCAGTGATTAATCCATTCACTTCCGACGCATATGCAAAGCATTGGTGATCCAGAAGCTGTGTGCGTAGTTTGACCATGAACTCCAAATGTCGGTCAATTATCAACTGCAATCGGTCAGAAGGGAGCGTCATTTTTCACTTTTTTGTCCCCGTCGCCAATTGTTATGCTTAAGCTAAATCGATTTCCGC GTAACGAACGAAAACCAATGACACGATAAGCT ]
[+] EMBL CD162455             [GATCGACGACATTTGATTTGAGGTCACTAGCGTTTGATTCTTGTGAAACAGGTTGCTTG AATTTTTTTGGAACCTCATTGGCAGATAATGGATCATTTGGCACCACTGTATCCACTATACTGCTCGCTTCGTTGCTCGTTTCTTCGTGGGCTGGTACTGCAGCAATTTCATGAGCATTTGACATGGCATCATGTTGCTGAGAACTGGGAGCATCACTGTTCGGACCTGCTAATTCAGGGATAGTGGTGTTTGAATCCACTACCGTGCACGTTTCGGAAGTGGATAGTGCTGGACAACCGGGCGTCTCTTGAGAGACTGCTGTTTCGTTTGAGATGCGGCTGATCGAGGATTCATCGAGGCTGCGATCATTTTCTAGCTCTGCGTGAAATTCAGTGATTAATCCATTCACTTCCGACGCATATGCAAAGCATTGGTGATCCAGAAGCTGTGTGCGTAGTTTGACCATGAACTCCAAATGTCGGTCAATTATCAACTGCAATCGGTCAGAAGGGAGCGTCATTTTTCACTTTTTTGTCCNCGTCGCCAATTGTTATGCTTAAGCTATATCGA TTCCGCGGTAACGAACGAAAACCAATGACACGATAAGCT ]
[+] EMBL CD092554             [GATCGACGACATTTGATTTGAGGTCACTAGCGTTTGATTCTTGTGAAACAGGTTGCTTG AATTTTTTTGGAACCTCATTGGCAGATAATGGATCATTTGGCACCACTGTATCCACTATACTGCTCGCTTCGTTGCTCGTTTCTTCGTGGGCTGGTACTGCAGCAATTTCATGAGCATTTGACATGGCATCATGTTGCTGAGAACTGGGAGCATCACTGTTCGGACCTGCTAATTCAGGGATAGTGGTGTTTGA                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD162414             [ ATCGACGACATTTGATTTGAGGTCACTAGCGTTTGATTCTTGTGAAACAGGTTGCTTG AATTTTTTTGGAACCTCATTGGCAGATAATGGATCATTTGGCACCACTGTATCCACTATACTGCTCGCTTCGTTGCTCGTTTCCTCGTGGGCTGGTACTGCAGCAATTTCATGAGCATTTGACATGGCATCATGTTGCTGAGAACTGGGAGCATCACTGTTCGGACCTGCTAATTCAGGGATAGTGGTGTTTGAATCCACTACCGTGCACGTTTCGGAAATGGATAGTGCTGGACAACCGGGCGTCTCTTGAGAGACTGCTGTTTCGTTTGAGATGCGGCTGATCGAGGATTCATCGAGGCTGCGATCATTTTCTAGCTCTGCGTGAAATTCAGTGATTAATCCATTCACTTCCGACGCATATGCAAAGCATTGGTGATCCAGAAGCTGTGTGCGTAGTTTGACCATGAACTCCAAATGTCGGTCAATTATCAACTGCAATCGGTCAGAAGGGAGCGTCATTTTTCACTTTTTTGTCCCCGTCGCCAATTGTTATGCTTAAGCTAAATCGA TTCCGCGGTAACGAACGAAAACCAATGACACGATAAGCTA]
[-] EMBL CD162427             [ ATCGACGACATTTGATTTGAGGTCACTAGCGTTTGATTCTTGTGANACAGG TGCTTGNAATTTTTTTGGAACCTCATTGGCAGATAATGGATCATTTGGCACCACTGTATCCACTATACTGCTCGCTTCGTTGCTCGTTTCTTCGTGGGCTGGTACTGCAGCAATTTCATGAGCATTTGACATGGCATCATGTTGCTGAGAACTGGGAGCATCACTGTTCGGACCTGCTAATTCAGGGATAGTGGTGTTTGAATCCACTACCGTGCACGTTTCGGAAATGGATAGTGCTGGACAACCGGGCGTCTCTTGAGAGACTGCTGTTTCGTTTGAGATGCGGCTGATCGAGGATTCATCGAGGCTGCGATCATTTTCTAGCTCTGCGTGAAATTCAGTGATTAATCCATTCACTTCCGACGCATATGCAAAGCATTGGTGATCCAGAAGCTGTGTGCGTAGTTTGACCATGAACTCCAAATGTCGGTCAATTATCAACTGCAATCGGTCAGAAGGGAGCGTCATTTTTCACTTTTTTGTCCCCGTCGCCAATTGTTATGCTTAGGCTAAATCGA TTCCGCGGTAACGAACGAAAACCAATGACACGATAAGCTA]




>consensus_8112#0
GATCGACGACATTTGATTTGAGGTCACTAGCGTTTGATTCTTGTGAAACAGGTTGCTTGA
ATTTTTTTGGAACCTCATTGGCAGATAATGGATCATTTGGCACCACTGTATCCACTATAC
TGCTCGCTTCGTTGCTCGTTTCTTCGTGGGCTGGTACTGCAGCAATTTCATGAGCATTTG
ACATGGCATCATGTTGCTGAGAACTGGGAGCATCACTGTTCGGACCTGCTAATTCAGGGA
TAGTGGTGTTTGAATCCACTACCGTGCACGTTTCGGAAATGGATAGTGCTGGACAACCGG
GCGTCTCTTGAGAGACTGCTGTTTCGTTTGAGATGCGGCTGATCGAGGATTCATCGAGGC
TGCGATCATTTTCTAGCTCTGCGTGAAATTCAGTGATTAATCCATTCACTTCCGACGCAT
ATGCAAAGCATTGGTGATCCAGAAGCTGTGTGCGTAGTTTGACCATGAACTCCAAATGTC
GGTCAATTATCAACTGCAATCGGTCAGAAGGGAGCGTCATTTTTCACTTTTTTGTCCCCG
TCGCCAATTGTTATGCTTAAGCTAAATCGATTCCGCGGTAACGAACGAAAACCAATGACA
CGATAAGCTA

consensusID : consensus_8112#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence

                              [CCGAGAANAATCGATTATACGAGCTCCCCCCATAACCTGGGTTCCCTCGGTCCATTGAACCACGATAGGCACCTCGTCCAGCACGCGAATCAAAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCATCATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTGGAAACGGTCCACGATTCGGAGGCCCGAAACGACCACCAGGAGGACCACCACCATACCTTCCACTGGGCTGACGACCAAATGACTCTCGGTCGCTATTTCGATCGAAGCGACCTCCCTCACGACTTCGATCACGTGAAGCATTGTAACCGCCTCTGTAGTCACGGCGACCACGATCATCATTTCGGCGGTTCGGAGAGCTTCGAAAATCATCTCGTCGTCCACGCGGCATGTCACGACCACGATCTCGGCTAT]

[+] EMBL CD120179             [CCGAGAANAATCGATTATACGAGCTCCCCCCATAACCTGGGTTCCCTCGGTCCATTGAACCACGATAGGCACCTCGTCCAGCACGCGAATCAAAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCATCATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTGGAAACGGTCCACGATTCGGAGGCCCGAAACGACCACCAGGAGGACCACCACCATACCTTCCACTGGGCTGACGACCAAATGACTCTCGGTCGCTATTTCGATCGAAGCGACCTCCCTCACGACTTCGATCACGTGAAGCATTGTAACCGCCTCTGTAGTCACGGCGACCACGATCATCATTTCGGCGGTTCGGAGAGCTTCGAAAATCATCTCGTCGTCCACGCGGCATGTCACGACCACGATCTCGGCTAT]




>consensus_8112#1
CCGAGAANAATCGATTATACGAGCTCCCCCCATAACCTGGGTTCCCTCGGTCCATTGAAC
CACGATAGGCACCTCGTCCAGCACGCGAATCAAAATTCGGTGCAGTGAAACCGCCTCTTG
CAGGGCCGCTCCTCATCATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGC
CAGACATCCCACTTGGAAACGGTCCACGATTCGGAGGCCCGAAACGACCACCAGGAGGAC
CACCACCATACCTTCCACTGGGCTGACGACCAAATGACTCTCGGTCGCTATTTCGATCGA
AGCGACCTCCCTCACGACTTCGATCACGTGAAGCATTGTAACCGCCTCTGTAGTCACGGC
GACCACGATCATCATTTCGGCGGTTCGGAGAGCTTCGAAAATCATCTCGTCGTCCACGCG
GCATGTCACGACCACGATCTCGGCTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8112#0      GATCGACGACATTTGATTTGAGGTCACTAGCGTTTGATTCTTGTGAAACAGGTTGCTTGA 60
consensus_8112#1      --CCGAGAANAATCGATTATACGAGCTCCCCCCATAACCTGGGTTCCCTCGGTCCATTGA 58
                         ***  * * * ****  * *       *   * *     **      ***   ****

consensus_8112#0      ATTTTTTTGGA-ACCTCATT-GGCAGATAATGGATCATTTGGCACCACTGTATCCACTAT 118
consensus_8112#1      ACCACGATAGGCACCTCGTCCAGCACGCGAATCAAAATTCGGTGC-AGTGAAACCGCC-T 116
                      *      * *  ***** *   ***    *   *  *** **  * * ** * ** *  *

consensus_8112#0      ACTGCTCGCTTCGTTGCTCGTTTCTTCGTGGGCTGGTACTGCAGCAATTTCATGAGCATT 178
consensus_8112#1      CTTGCAGGGC-CGCTCCTCATCATGCCACCG-CGGGAGTTGTCGAAACCTCCAAATCCAC 174
                        ***  *   ** * *** *     *   * * **   **  * **  **   * *   

consensus_8112#0      TGACATGGCATCATGTTGCTGAGAACTGGGAGCATCACTGTTCGGACCTGCTAATTCAGG 238
consensus_8112#1      CCGGGCCAGA-CATCCCACTTGGAAACGGT----CCACGATTCGGAGGCCCGAAACGACC 229
                               * ***    **  ***  **      ***  ******    * **   *  

consensus_8112#0      GATAGTGGTGTTTGAATCCACTACCGTGCACGTTTCGGAAATGGATAGTGCTGGACAACC 298
consensus_8112#1      ACCAGGAGGA-------CCACCACCAT--ACCTTCC--------ACTGGGCTG-ACGACC 271
                         **  *         **** *** *  ** ** *        *  * **** ** ***

consensus_8112#0      GGGCGTCTCTTGAGAGACTGCTGTTTCGTTTGAGATGCGGCTGATCGAGGATTCATCGAG 358
consensus_8112#1      AAATGACTCTCG----GTCGCTATTTCGATCGAAGCGACCTCCCTCACGACTTCGATCAC 327
                          * **** *       *** ***** * **   *       **  *  ***    * 

consensus_8112#0      GCTGCGATCATTTTCTAGCTCTGCGTGAAATTCAGTGATTAATCCATTCACTTCCGACGC 418
consensus_8112#1      GTGAAGCATTGTAACCGCCTCTGT---AGTCACGGCGACCACGATCATCA-TTTCGGCG- 382
                      *    *     *  *   *****    *    * * **  *      *** ** ** ** 

consensus_8112#0      ATATGCAAAGCATTGGTGATCCAGAAGCTGTGTGCGTAGTTTGACCATGAACTCCAAATG 478
consensus_8112#1      GTTCGGAGAGCTTCGAAAATCATCTCGTCGTCCACGCGGCATG-TCACGACCAC--GATC 439
                       *  * * *** * *   ***     *  **   **  *  **  ** ** * *   ** 

consensus_8112#0      TCGGTCAATTATCAACTGCAATCGGTCAGAAGGGAGCGTCATTTTTCACTTTTTTGTCCC 538
consensus_8112#1      TCGGCTAT---------------------------------------------------- 447
                      ****  *                                                     

consensus_8112#0      CGTCGCCAATTGTTATGCTTAAGCTAAATCGATTCCGCGGTAACGAACGAAAACCAATGA 598
consensus_8112#1      ------------------------------------------------------------
                                                                                  

consensus_8112#0      CACGATAAGCTA 610
consensus_8112#1      ------------