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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8113#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1063 fasta sequence
[ATTCGGCACGAGGCGTGTACGTNATTTGAATANTCTCAAGGGATTCCAACTCTTAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACACCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACTTCTCCTTCTAGATG-CTCTCTTATTGCTGGTCCTTAC-TTGTTTCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTCACAGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGGCAAATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTGATTTTGATCACATTATACACAAAACTCAAAAAATCTATAGTGATAGTCGGTCATCCAATCTTAGTCAATTAAATGTAGCATTACAAGACGTACAAAGAATCATGGTACAGAATATTGATGATGTATTGCAACGTGGTGAAGCACTTTCAATTATTTAAGGTTATTCACCTACATCGTATGGTAACTGGACAGATTACTATTCAACGTAGATACATAACATGTAAATAAAAACCTTGGACTCTCGAGCATCTAACTTGTCTACAATGTCCAAGAAATACCGTCAAGATGCCCACTCACTCAACCTTCAATCGGCCTACGTCAAATACATACTTTTTTGCATCTTGATATTAGTAGTTNTCACATACTTTTATATTAGGTTTCTATGATGTAATTAGGCTANTATTCTATCCCAGTATGATTAACTTGTATAAATCCATATACTAATGGGGGAGTTGTGATGCTATTATCAATTNCTTTCTTTATTTATTNTC-AGTAAATNCTCATTTAGTAATCTGGTTTTTTTTCAAAAATTAAT]
[+] EMBL CD081589 [ATTCGGCACGAGGCGTGTACGTNATTTGAATANTCTCAAGGGATTCCAACTCTTAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACACCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACTTCTCCTTCTAGATG CTCTCTTATTGCTGGTCCTTAC TTGTTTCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTCACAGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGGCAAATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTGATTTTGATCACATTATACACAAAACTCAAAAAATCTATAGTGATAGTCGGTCATCCAATCTTAGTCAATTAAATGTAGCATTACAAGACGTACAAAGAATCATGGTACAGAATATTGATGATGTATTGCAACGTGGTGAAGCACTTTCAATTATTTAAGGTTATTCACCTACATCGTATGGTAACTGGACAGATTACTATTCAACGTAGATACATAACATGTAAATAAAAACCTTGGACTCTCGAGCATCTAACTTGTCTACAATGTCCAAGAAATACCGTCAAGATGCCCACTCACTCAACCTTCAATCGGCCTACGTCAAATACATACTTTTTTGCATCTTGATATTAGTAGTTNTCACATACTTTTATATTAGGTTTCTATGATGTAATTAGGCTANTATTCTATCCCAGTATGATTAACTTGTATAAATCCATATACTAATGGGGGAGTTGTGATGCTATTATCAATTNCTTTCTTTATTTATTNTC AGTAAATNCTCATTTAGTAATCTGGTTTTTTTTCAA ]
[+] EMBL CD084390 [ GCGTGTACGT ATTTGAATA TCTCAA GGATTCCAACTCTTAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACACCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACTTCTCCTTCTAGATG CTCTCTTATTGCTGGTCCTTAC TTGTTTCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTCACAGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGGCAAATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTG ]
[+] EMBL AA756927 [ nCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGAAAGTCGTATGACTCNTACTTCTCCTTCTAGATGTCTCTC CATTGCTGGTCCTTACGGTG GGCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTCACAGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGGCAAATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTGATTTTGATCACATTATACACAAAACTCAAAAAATCTATAGTGATAG ]
[-] EMBL CD075413 [ TTATACACAAAACTCAAAAAATCTATAGTGATAGTCGGTCATCCAATCTTAGTCAATTAAATGTAGCATTACAAGACGTACAAAGAATCATGGTACAGAATATTGATGATGTATTGCAACGTGGTGAAGCACTTTCAATTATTTAAGGTTATTCACCTACATCGTATGGTAACTGGACAGATTACTATTCAACGTAGATACATAACATGTAAATAAAACCCTTGGACTCTCGAGCATCTAACTTGTCTACAATGTCCAAGAAATACCGTCAAGATGCCCACTCACTCAACCTTCAATCGGCCTACGTCAAATACATACTTTTTTGCATCTTGATATTAGTAGTTTTCACATACTTTTATATTAGGTTTCTATGATGTAATTAGGCTATAATTCTATCCCAGTATGATTAACTTGTATAAATCCATATACTAAT GGGGAGTTGTGATGCTATTATCAATTTCTTTCTTTATTTATT TCAAGTAAATTCTCATTTAGTAATCTGTTTTTTTTTCAAAAATTAAT]
consensusID : consensus_8113#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 328 fasta sequence
[TACTAAATGATCCACGTGTACGTATTTGAATATCTCAAGGATTCCAACTCTTAAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACGCCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACT]
[-] EMBL CD178800 [TACTAAATGATCCACGTGTACGTATTTGAATATCTCAAGGATTCCAACTCTTAAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACGCCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACT]
[-] EMBL CD178899 [TACTAAATGATCCACGTGTACGTATTTGAATATCTCAAGGATTCCAACTCTTAAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACGCCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8113#0 -ATTCGGCACGAGGCGTGTACGTNATTTGAATANTCTCAAGGGATTCCAACTCTTAAAAA 59
consensus_8113#1 TACTAAATGATCCACGTGTACGTA-TTTGAATAT-CTCAAGG-ATTCCAACTCTTAAAAA 57
* * ********* ******** ******* *****************
consensus_8113#0 A-GGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAG 118
consensus_8113#1 AAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAG 117
* **********************************************************
consensus_8113#0 GAGTTATCGAAGCAAGACTTCTGACACCCCCATAACCTGTTCTTGCACAACTTCACCAGT 178
consensus_8113#1 GAGTTATCGAAGCAAGACTTCTGACGCCCCCATAACCTGTTCTTGCACAACTTCACCAGT 177
************************* **********************************
consensus_8113#0 CAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGC 238
consensus_8113#1 CAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGC 237
************************************************************
consensus_8113#0 AGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGC 298
consensus_8113#1 AGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGC 297
************************************************************
consensus_8113#0 AAAAGCACTCGTTTGTCGTATGACTCCTACTTCTCCTTCTAGATGCTCTCTTATTGCTGG 358
consensus_8113#1 AAAAGCACTCGTTTGTCGTATGACTCCTACT----------------------------- 328
*******************************
consensus_8113#0 TCCTTACTTGTTTCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTC 418
consensus_8113#1 ------------------------------------------------------------
consensus_8113#0 ACAGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGG 478
consensus_8113#1 ------------------------------------------------------------
consensus_8113#0 CAAATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTGATTTTGATCA 538
consensus_8113#1 ------------------------------------------------------------
consensus_8113#0 CATTATACACAAAACTCAAAAAATCTATAGTGATAGTCGGTCATCCAATCTTAGTCAATT 598
consensus_8113#1 ------------------------------------------------------------
consensus_8113#0 AAATGTAGCATTACAAGACGTACAAAGAATCATGGTACAGAATATTGATGATGTATTGCA 658
consensus_8113#1 ------------------------------------------------------------
consensus_8113#0 ACGTGGTGAAGCACTTTCAATTATTTAAGGTTATTCACCTACATCGTATGGTAACTGGAC 718
consensus_8113#1 ------------------------------------------------------------
consensus_8113#0 AGATTACTATTCAACGTAGATACATAACATGTAAATAAAAACCTTGGACTCTCGAGCATC 778
consensus_8113#1 ------------------------------------------------------------
consensus_8113#0 TAACTTGTCTACAATGTCCAAGAAATACCGTCAAGATGCCCACTCACTCAACCTTCAATC 838
consensus_8113#1 ------------------------------------------------------------
consensus_8113#0 GGCCTACGTCAAATACATACTTTTTTGCATCTTGATATTAGTAGTTNTCACATACTTTTA 898
consensus_8113#1 ------------------------------------------------------------
consensus_8113#0 TATTAGGTTTCTATGATGTAATTAGGCTANTATTCTATCCCAGTATGATTAACTTGTATA 958
consensus_8113#1 ------------------------------------------------------------
consensus_8113#0 AATCCATATACTAATGGGGGAGTTGTGATGCTATTATCAATTNCTTTCTTTATTTATTNT 1018
consensus_8113#1 ------------------------------------------------------------
consensus_8113#0 CAGTAAATNCTCATTTAGTAATCTGGTTTTTTTTCAAAAATTAAT 1063
consensus_8113#1 ---------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||