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Schistosoma mansoni
cluster # 8113 cluster # 8113       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8113#0 length = 1063 sequences # 4  
consensus_8113#1 length = 328 sequences # 2  

consensusID : consensus_8113#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1063
fasta sequence
                              [ATTCGGCACGAGGCGTGTACGTNATTTGAATANTCTCAAGGGATTCCAACTCTTAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACACCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACTTCTCCTTCTAGATG-CTCTCTTATTGCTGGTCCTTAC-TTGTTTCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTCACAGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGGCAAATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTGATTTTGATCACATTATACACAAAACTCAAAAAATCTATAGTGATAGTCGGTCATCCAATCTTAGTCAATTAAATGTAGCATTACAAGACGTACAAAGAATCATGGTACAGAATATTGATGATGTATTGCAACGTGGTGAAGCACTTTCAATTATTTAAGGTTATTCACCTACATCGTATGGTAACTGGACAGATTACTATTCAACGTAGATACATAACATGTAAATAAAAACCTTGGACTCTCGAGCATCTAACTTGTCTACAATGTCCAAGAAATACCGTCAAGATGCCCACTCACTCAACCTTCAATCGGCCTACGTCAAATACATACTTTTTTGCATCTTGATATTAGTAGTTNTCACATACTTTTATATTAGGTTTCTATGATGTAATTAGGCTANTATTCTATCCCAGTATGATTAACTTGTATAAATCCATATACTAATGGGGGAGTTGTGATGCTATTATCAATTNCTTTCTTTATTTATTNTC-AGTAAATNCTCATTTAGTAATCTGGTTTTTTTTCAAAAATTAAT]

[+] EMBL CD081589             [ATTCGGCACGAGGCGTGTACGTNATTTGAATANTCTCAAGGGATTCCAACTCTTAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACACCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACTTCTCCTTCTAGATG CTCTCTTATTGCTGGTCCTTAC TTGTTTCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTCACAGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGGCAAATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTGATTTTGATCACATTATACACAAAACTCAAAAAATCTATAGTGATAGTCGGTCATCCAATCTTAGTCAATTAAATGTAGCATTACAAGACGTACAAAGAATCATGGTACAGAATATTGATGATGTATTGCAACGTGGTGAAGCACTTTCAATTATTTAAGGTTATTCACCTACATCGTATGGTAACTGGACAGATTACTATTCAACGTAGATACATAACATGTAAATAAAAACCTTGGACTCTCGAGCATCTAACTTGTCTACAATGTCCAAGAAATACCGTCAAGATGCCCACTCACTCAACCTTCAATCGGCCTACGTCAAATACATACTTTTTTGCATCTTGATATTAGTAGTTNTCACATACTTTTATATTAGGTTTCTATGATGTAATTAGGCTANTATTCTATCCCAGTATGATTAACTTGTATAAATCCATATACTAATGGGGGAGTTGTGATGCTATTATCAATTNCTTTCTTTATTTATTNTC AGTAAATNCTCATTTAGTAATCTGGTTTTTTTTCAA        ]
[+] EMBL CD084390             [            GCGTGTACGT ATTTGAATA TCTCAA GGATTCCAACTCTTAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACACCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACTTCTCCTTCTAGATG CTCTCTTATTGCTGGTCCTTAC TTGTTTCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTCACAGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGGCAAATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AA756927             [                                                                                                                                                                                                                                      nCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGAAAGTCGTATGACTCNTACTTCTCCTTCTAGATGTCTCTC CATTGCTGGTCCTTACGGTG GGCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTCACAGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGGCAAATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTGATTTTGATCACATTATACACAAAACTCAAAAAATCTATAGTGATAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD075413             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTATACACAAAACTCAAAAAATCTATAGTGATAGTCGGTCATCCAATCTTAGTCAATTAAATGTAGCATTACAAGACGTACAAAGAATCATGGTACAGAATATTGATGATGTATTGCAACGTGGTGAAGCACTTTCAATTATTTAAGGTTATTCACCTACATCGTATGGTAACTGGACAGATTACTATTCAACGTAGATACATAACATGTAAATAAAACCCTTGGACTCTCGAGCATCTAACTTGTCTACAATGTCCAAGAAATACCGTCAAGATGCCCACTCACTCAACCTTCAATCGGCCTACGTCAAATACATACTTTTTTGCATCTTGATATTAGTAGTTTTCACATACTTTTATATTAGGTTTCTATGATGTAATTAGGCTATAATTCTATCCCAGTATGATTAACTTGTATAAATCCATATACTAAT GGGGAGTTGTGATGCTATTATCAATTTCTTTCTTTATTTATT TCAAGTAAATTCTCATTTAGTAATCTGTTTTTTTTTCAAAAATTAAT]


>consensus_8113#0 ATTCGGCACGAGGCGTGTACGTNATTTGAATANTCTCAAGGGATTCCAACTCTTAAAAAA GGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGA GTTATCGAAGCAAGACTTCTGACACCCCCATAACCTGTTCTTGCACAACTTCACCAGTCA GATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAG CAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAA AAGCACTCGTTTGTCGTATGACTCCTACTTCTCCTTCTAGATGCTCTCTTATTGCTGGTC CTTACTTGTTTCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTCAC AGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGGCA AATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTGATTTTGATCACA TTATACACAAAACTCAAAAAATCTATAGTGATAGTCGGTCATCCAATCTTAGTCAATTAA ATGTAGCATTACAAGACGTACAAAGAATCATGGTACAGAATATTGATGATGTATTGCAAC GTGGTGAAGCACTTTCAATTATTTAAGGTTATTCACCTACATCGTATGGTAACTGGACAG ATTACTATTCAACGTAGATACATAACATGTAAATAAAAACCTTGGACTCTCGAGCATCTA ACTTGTCTACAATGTCCAAGAAATACCGTCAAGATGCCCACTCACTCAACCTTCAATCGG CCTACGTCAAATACATACTTTTTTGCATCTTGATATTAGTAGTTNTCACATACTTTTATA TTAGGTTTCTATGATGTAATTAGGCTANTATTCTATCCCAGTATGATTAACTTGTATAAA TCCATATACTAATGGGGGAGTTGTGATGCTATTATCAATTNCTTTCTTTATTTATTNTCA GTAAATNCTCATTTAGTAATCTGGTTTTTTTTCAAAAATTAAT



consensusID : consensus_8113#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 328
fasta sequence
                              [TACTAAATGATCCACGTGTACGTATTTGAATATCTCAAGGATTCCAACTCTTAAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACGCCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACT]

[-] EMBL CD178800             [TACTAAATGATCCACGTGTACGTATTTGAATATCTCAAGGATTCCAACTCTTAAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACGCCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACT]
[-] EMBL CD178899             [TACTAAATGATCCACGTGTACGTATTTGAATATCTCAAGGATTCCAACTCTTAAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACGCCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACT]


>consensus_8113#1 TACTAAATGATCCACGTGTACGTATTTGAATATCTCAAGGATTCCAACTCTTAAAAAAAG GATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAG TTATCGAAGCAAGACTTCTGACGCCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAG ATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGC AACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAA AGCACTCGTTTGTCGTATGACTCCTACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8113#0      -ATTCGGCACGAGGCGTGTACGTNATTTGAATANTCTCAAGGGATTCCAACTCTTAAAAA 59
consensus_8113#1      TACTAAATGATCCACGTGTACGTA-TTTGAATAT-CTCAAGG-ATTCCAACTCTTAAAAA 57
                       * *          *********  ********  ******* *****************

consensus_8113#0      A-GGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAG 118
consensus_8113#1      AAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAG 117
                      * **********************************************************

consensus_8113#0      GAGTTATCGAAGCAAGACTTCTGACACCCCCATAACCTGTTCTTGCACAACTTCACCAGT 178
consensus_8113#1      GAGTTATCGAAGCAAGACTTCTGACGCCCCCATAACCTGTTCTTGCACAACTTCACCAGT 177
                      ************************* **********************************

consensus_8113#0      CAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGC 238
consensus_8113#1      CAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGC 237
                      ************************************************************

consensus_8113#0      AGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGC 298
consensus_8113#1      AGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGC 297
                      ************************************************************

consensus_8113#0      AAAAGCACTCGTTTGTCGTATGACTCCTACTTCTCCTTCTAGATGCTCTCTTATTGCTGG 358
consensus_8113#1      AAAAGCACTCGTTTGTCGTATGACTCCTACT----------------------------- 328
                      *******************************                             

consensus_8113#0      TCCTTACTTGTTTCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTC 418
consensus_8113#1      ------------------------------------------------------------
                                                                                  

consensus_8113#0      ACAGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGG 478
consensus_8113#1      ------------------------------------------------------------
                                                                                  

consensus_8113#0      CAAATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTGATTTTGATCA 538
consensus_8113#1      ------------------------------------------------------------
                                                                                  

consensus_8113#0      CATTATACACAAAACTCAAAAAATCTATAGTGATAGTCGGTCATCCAATCTTAGTCAATT 598
consensus_8113#1      ------------------------------------------------------------
                                                                                  

consensus_8113#0      AAATGTAGCATTACAAGACGTACAAAGAATCATGGTACAGAATATTGATGATGTATTGCA 658
consensus_8113#1      ------------------------------------------------------------
                                                                                  

consensus_8113#0      ACGTGGTGAAGCACTTTCAATTATTTAAGGTTATTCACCTACATCGTATGGTAACTGGAC 718
consensus_8113#1      ------------------------------------------------------------
                                                                                  

consensus_8113#0      AGATTACTATTCAACGTAGATACATAACATGTAAATAAAAACCTTGGACTCTCGAGCATC 778
consensus_8113#1      ------------------------------------------------------------
                                                                                  

consensus_8113#0      TAACTTGTCTACAATGTCCAAGAAATACCGTCAAGATGCCCACTCACTCAACCTTCAATC 838
consensus_8113#1      ------------------------------------------------------------
                                                                                  

consensus_8113#0      GGCCTACGTCAAATACATACTTTTTTGCATCTTGATATTAGTAGTTNTCACATACTTTTA 898
consensus_8113#1      ------------------------------------------------------------
                                                                                  

consensus_8113#0      TATTAGGTTTCTATGATGTAATTAGGCTANTATTCTATCCCAGTATGATTAACTTGTATA 958
consensus_8113#1      ------------------------------------------------------------
                                                                                  

consensus_8113#0      AATCCATATACTAATGGGGGAGTTGTGATGCTATTATCAATTNCTTTCTTTATTTATTNT 1018
consensus_8113#1      ------------------------------------------------------------
                                                                                  

consensus_8113#0      CAGTAAATNCTCATTTAGTAATCTGGTTTTTTTTCAAAAATTAAT 1063
consensus_8113#1      ---------------------------------------------
                                                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)