cluster # 8131

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Schistosoma mansoni
cluster # 8131 cluster # 8131 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8131#0 length = 551 sequences # 4

consensus_8131#1 length = 277 sequences # 1
consensus_8131#2 length = 264 sequences # 1

consensusID : consensus_8131#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 551
fasta sequence

                              [CTGCCCTGGGAGGAGCCCGTGTCCTGGAATGTGTTTCTGTAATGTGTTGAGGATAACAGCAGAACTGGCTGCAGCTAAAGCTGTTTGACTGGCTGCTATAGCTAGATTAGTATCTAATGGAGCGAAATCTGCATTACTAGCAACTCGTTTTATCACTTCTTTTGTATGAGCTTCAGTAAGTTTTTCAGCTACTTTTAATTTACTCTGAAAAAATTTCGTATCGTCCATTACACCGGTGGCAACAGCTAATCCACTGACAATTGAACCGCCTAAATTAAAATTCATTTGCATTTGACTATTAGATAATGCATGAGCCATTGTTGTAGATGCATTACCAGGACCAATATCATAAATACGCGAACGATGTAACAGATTCATTTGATTTAATCATTGAAATGAATTCTGTACGATATTCTTTCTCGGCTGGTCCCCATTCATGAACAGGTTTTAAAAATTCTTTCATCAAGACAAAACCACCTTCTTTACAGTATTTATATAAAAACCATGCAATAATTGTTAACACAGGTATAGCTGCTAGTATTTGACGAAAT]

[+] EMBL CD188609             [CTGCCCTGGGAGGAGCCCGTGTCCTGGAATGTGATTCTGCAATGTGTTGAGGATAACAGCAGAACTGGCTGCAGCTAACGCTGTTTGACTGGCTGTTATACCTAGATTAGTATCTAATGGAGCGAAATCTGCATTACTAGCAACTCGTTTTATCACTTCTTTTGTATGAGCTTCAGTAAGTTTTTCAGCTACTTTTAATTTACTCTGAAAAAATTTCGTATCGTCCATTACACCGGTGGCAACAGCTAATCCACTGACAATTGAACCGCCTAAATTAAAATTCATTTGCATTTGACTATTAGATAATGCATGAGCCATTGTTGT                                                                                                                                                                                                                                   ]
[-] EMBL CD167521             [                              tTGTTTCTGTAATGTGTTGAGGATAACAGCAGAACTGGCTGCAGCTAAAGCTGTTTGACTGGCTGCTATAGCTAGATTAGTATCTAATGGAGCGAAATCTGCATTGCTAGCAACTCGTTTTACCACTTCTTTTGTATGAGCTTCAGTAAGTTTTTCAGCTACTTTTAATTTACTCTGAAAAAATTTCGTATCGTCCATTACACCGGTGGCAACAGCTAATCCACTGACAATTGAACCGCCTAAATTAAAATTCATTTGCATTTGACTATTAGATAATGCATGAGCCATTGTTGTAGATGCATTACCAGGACCAATATCATAAATACGCGAACGATGTAACAGATTCATTT                                                                                                                                                                           ]
[-] EMBL CD167531             [                               TGTTTCTGTAATGTGTTGAGGATAACAGCAGAACTGGCTGCAGCTAAAGCTGTTTGACTGGCTGCTATAGCTAGATTAGTATCTAATGGAGCGAAATCTGCATTACTAGCAACTCGTTTTATCACTTCTTTTGTATGAGCTTCAGTAAGTTTTTCAGCTACTTTTAATTTACTCGGGAAAAA                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD167498             [                                                                                                                                                                                                 TTTAATTTACTCTGAAAAAATTTCGTATCGTCCATTACACCGGTGGCAACAGCTAATCCACTGACAATTGAACCGCCTACATTAAAATTCATTTGCATTGGACTATAAGATAATGCATGAGCCATTGTTGTAGATGCATTACCAGGACCAATATCATAAATACGCGAACGATGTAAC GATTCATTTGATTTAATCATTGAAATGAATTCTGTACGATATTCTTTCTCGGCTGGTCCCCATTCATGAACAGGTTTTAAAAATTCTTTCATCAAGACAAAACCACCTTCTTTACAGTATTTATATAAAAACCATGCAATAATTGTTAACACAGGTATAGCTGCTAGTATTTGACGAAAT]




>consensus_8131#0
CTGCCCTGGGAGGAGCCCGTGTCCTGGAATGTGTTTCTGTAATGTGTTGAGGATAACAGC
AGAACTGGCTGCAGCTAAAGCTGTTTGACTGGCTGCTATAGCTAGATTAGTATCTAATGG
AGCGAAATCTGCATTACTAGCAACTCGTTTTATCACTTCTTTTGTATGAGCTTCAGTAAG
TTTTTCAGCTACTTTTAATTTACTCTGAAAAAATTTCGTATCGTCCATTACACCGGTGGC
AACAGCTAATCCACTGACAATTGAACCGCCTAAATTAAAATTCATTTGCATTTGACTATT
AGATAATGCATGAGCCATTGTTGTAGATGCATTACCAGGACCAATATCATAAATACGCGA
ACGATGTAACAGATTCATTTGATTTAATCATTGAAATGAATTCTGTACGATATTCTTTCT
CGGCTGGTCCCCATTCATGAACAGGTTTTAAAAATTCTTTCATCAAGACAAAACCACCTT
CTTTACAGTATTTATATAAAAACCATGCAATAATTGTTAACACAGGTATAGCTGCTAGTA
TTTGACGAAAT

consensusID : consensus_8131#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [GTAAGAGTNTGGGTAGAGTNTTCTGGAATNTGTTTCTGTAATGTGTTGAGGATAACAGCAGAACTGGCTGCAGCTANAGCTGTTTGACTGGCTGCTATAGCTAGATTAGTATCTAATGGAGCGAAATCTGCATTACTAGCAACTCGTTTTATCACTTCTTTTGTATGAGCTTCAGTAAGTTTTTCAGCTACTTTTAATTTACTCTGAAAAAATTTCGTATCGTCCATTACACCGGTGGCAACAGCTAATCCACTGACAACCTCGTGCCGAATTCTGG]

[-] EMBL CD077531             [GTAAGAGTNTGGGTAGAGTNTTCTGGAATNTGTTTCTGTAATGTGTTGAGGATAACAGCAGAACTGGCTGCAGCTANAGCTGTTTGACTGGCTGCTATAGCTAGATTAGTATCTAATGGAGCGAAATCTGCATTACTAGCAACTCGTTTTATCACTTCTTTTGTATGAGCTTCAGTAAGTTTTTCAGCTACTTTTAATTTACTCTGAAAAAATTTCGTATCGTCCATTACACCGGTGGCAACAGCTAATCCACTGACAACCTCGTGCCGAATTCTGG]




>consensus_8131#1
GTAAGAGTNTGGGTAGAGTNTTCTGGAATNTGTTTCTGTAATGTGTTGAGGATAACAGCA
GAACTGGCTGCAGCTANAGCTGTTTGACTGGCTGCTATAGCTAGATTAGTATCTAATGGA
GCGAAATCTGCATTACTAGCAACTCGTTTTATCACTTCTTTTGTATGAGCTTCAGTAAGT
TTTTCAGCTACTTTTAATTTACTCTGAAAAAATTTCGTATCGTCCATTACACCGGTGGCA
ACAGCTAATCCACTGACAACCTCGTGCCGAATTCTGG

consensusID : consensus_8131#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence

                              [TGACTATTAGATAATGCATGAGCCATTGTTGTAGATGCATTACCAGGACCAATATCATAAATACGCGAACGATGTAACGATTCATTTGATTTAATCATTGAAATGAATTCTGTACGATATTCTTTCTCGGCTGGTCCCCATTCATGAACAGGTTTTAAAAATTCTTTCATCAAGACAAAACCACCTTCTTTACAGTATTTATATAAAAACCATGCAATAATTGTTAACACAGGTATAGCCCTCGTGCCGAATTTTTGCCTGCGA]

[-] EMBL CD077991             [TGACTATTAGATAATGCATGAGCCATTGTTGTAGATGCATTACCAGGACCAATATCATAAATACGCGAACGATGTAACGATTCATTTGATTTAATCATTGAAATGAATTCTGTACGATATTCTTTCTCGGCTGGTCCCCATTCATGAACAGGTTTTAAAAATTCTTTCATCAAGACAAAACCACCTTCTTTACAGTATTTATATAAAAACCATGCAATAATTGTTAACACAGGTATAGCCCTCGTGCCGAATTTTTGCCTGCGA]




>consensus_8131#2
TGACTATTAGATAATGCATGAGCCATTGTTGTAGATGCATTACCAGGACCAATATCATAA
ATACGCGAACGATGTAACGATTCATTTGATTTAATCATTGAAATGAATTCTGTACGATAT
TCTTTCTCGGCTGGTCCCCATTCATGAACAGGTTTTAAAAATTCTTTCATCAAGACAAAA
CCACCTTCTTTACAGTATTTATATAAAAACCATGCAATAATTGTTAACACAGGTATAGCC
CTCGTGCCGAATTTTTGCCTGCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8131#0      CTGCCCTGGGAGGAGCCCGTGTCCTGGAATGTGTTTCTGTAATGTGTTGAGGATAACAGC 60
consensus_8131#2      ------------------------------------------------------------
consensus_8131#1      ------------------------------------------------------------
                                                                                  

consensus_8131#0      AGAACTGGCTGCAGCTAAAGCTGTTTGACTGGCTGCTATAGCTAGATTAGTATCTAATGG 120
consensus_8131#2      ------------------------------------------------------------
consensus_8131#1      ------------------------------------------------------------
                                                                                  

consensus_8131#0      AGCGAAATCTGCATTACTAGCAACTCGTTTTATCACTTCTTTTGTATGAGCTTCAGTAAG 180
consensus_8131#2      ------------------------------------------------------------
consensus_8131#1      ------------------------------------------------------------
                                                                                  

consensus_8131#0      TTTTTCAGCTACTTTTAATTTACTCTGAAAAAATTTCGTATCGTCCATTACACCGGTGGC 240
consensus_8131#2      ------------------------------------------------------------
consensus_8131#1      ------------------------------------------------------------
                                                                                  

consensus_8131#0      AACAGCTAATCCACTGACAATTGAACCGCCTAAATTAAAATTCATTTGCATTTGACTATT 300
consensus_8131#2      ----------------------------------------------------TGACTATT 8
consensus_8131#1      ------------------------------------GTAAGAGTNTGGGTAGAGTNTTCT 24
                                                                           *  *  *

consensus_8131#0      AGATAATGCATGAGCCAT-TGTTGTAGATGCATTACCAGGACCAATATCATAAATACGCG 359
consensus_8131#2      AGATAATGCATGAGCCAT-TGTTGTAGATGCATTACCAGGACCAATATCATAAATACGCG 67
consensus_8131#1      GGAATNTGTTTCTGTAATGTGTTGAGGAT--AACAGCAGAACTGGCTGCAGCTANAGCTG 82
                       **   **  *  *  ** *****  ***  *  * *** **      **   * *   *

consensus_8131#0      AACGATGTAACAGATTCATTTGATTTAAT---CATTGAAATGAATTCTGTACGATATTCT 416
consensus_8131#2      AACGATGTAAC-GATTCATTTGATTTAAT---CATTGAAATGAATTCTGTACGATATTCT 123
consensus_8131#1      TTTGAC-TGGCTGCTATAGCTAGATTAGTATCTAATGGAGCGAAATCTGCATTAC-TAGC 140
                         **  *  * * *  *  *   *** *    * ** *  *** **** *  *  *   

consensus_8131#0      TTCTCGGCTGGTCCCCATTCATGAACAGGTTTTAAAAATTCTTTCATCAAGACAAAACCA 476
consensus_8131#2      TTCTCGGCTGGTCCCCATTCATGAACAGGTTTTAAAAATTCTTTCATCAAGACAAAACCA 183
consensus_8131#1      AACTCGTTTTATCACTTCTTTTGTATGAGCTTCAGTAAGTTTTTCAGCTACTTTTAATTT 200
                        ****  *  ** *   *  ** *   * ** *  ** * ***** * *     **   

consensus_8131#0      CCTTCTTTACAGTAT----TTATATAAAAACCATGCAATAATTGTTAACACAGGTATAGC 532
consensus_8131#2      CCTTCTTTACAGTAT----TTATATAAAAACCATGCAATAATTGTTAACACAGGTATAGC 239
consensus_8131#1      ACTCTGAAAAAATTTCGTATCGTCCATTACACCGGTGGCAACAGCTAATCCACTGACAAC 260
                       **     * * * *    *  *  *  *  *  *    **  * ***  **   * * *

consensus_8131#0      -----TGCT-AGTATTTGACGAAAT 551
consensus_8131#2      CCTCGTGCCGAATTTTTGCCTGCGA 264
consensus_8131#1      C-TCGTGCCGAATTCTGG------- 277
                           ***  * *  * *