These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1642 fasta sequence [TTCGCAAGATTACTTGTTNCAAAGTTCCCAGGCAGGAATATATATGTTAGAAAATGTCAACATATAAATGAGGAATCGGAGACAAGTTACAGCTTGGTAGCTCAATAGTTTAACACGTTTTGGTGGAACGTTTTATATAGCATATATGTCCCCATCGTCATCTTCATCATCCGTTACATTAGTAGCAGGAACACTGGCGTTGTTTGACCCATTAATAGGTTGAGTGATTGTATGGCCATTCGTATCAGACTCCTCCTCAGAACTTTCTGACTCTTNNNNNNNNNNTCTCTCAGC--TGCAA-AGTCACAAGAGAGCAACGAGCCAGTATTTTCGCACTCAGCTCGCGAGATACGAATTTTTTTGAAGGTCCTTTGTCGTACCAACCCAAAATAACGTCTTCTTCAATAACGTCGCAGTCGTACAACGTTTTAAGAAGATGACATGCCTTATCTACTA-GATTTTGATCTGAATGTCTCTCAATAAGCTTCGCCATGGCACCCCATGTATA-AATTGGGCTCGTTTCTGATCTTCACCCGATCGAGTAAACAAGAGTAATAATGGGGAGTA-TTCTTTATATCAGTCAGTATAGTAGAGGGATTATTAAACAACACCTCTGCGATAACCA-ACACAGCCCTCGCTCATTGAACTTTCATGATAAATTACGAAAGGAAAAATTGCAAACAATGAAGGAAACCGGATGCTATGTTCCTGAAGCATTTACAGAAGGAATGACGAAAGATTTAGAGAGAGAACGTCGAAGGCTTCAACTTGAAACTTGTGAATATCTGATCAAGGTGAATGAATTAAAAGCAAAGCGTGGTGCTGATCTCCTGCAGCATTTAATTGATTTCTTCTATGTACCAACTCATTACTTACGTGAATGGTTAGGTGTGATGGATCATTTTGGAAAATCAATGAATGATTTATCTAATCGAGTAAATGAATTACACAAAATTAATGATATACAAAAACGTCGTCTTGTCGATACTCGAGAAGAAGTCAAGGGAGTCTTAGATAAAGAGTGTGATTCGATTTGTCGGAAATCCCGTCTATTCGGACAGTCAGTGCAAACTGGTGTCACGTATGCAGCACAACCAACTCCATTGAATCGAGCATTTGGAACTAAAAAAAGTGGATTTCTATTGAAAAAATCAGATGGAAAGGTTAAACGTGTTTGGCAACGTCGTCGTGTACACATTGCTGATGGGGAATTATGTTTGTATCATGCAGATGAAAGTAAACCACCTGTACGCCTAACTTTACTCACTTGTCAAGTTAAATTACCTACGGAATGTATGGATAATGATTCAACTTTAAATCATAGTACTGGGGGTGGTAGTGCTGGTGGTAATCAACACTCGACAACTTCAGAAGGAAAACTTTACTTTGATCTTGTCTCAAATAGTCGAACATATAACTTCCAAGCAGAAGATGAACAAGAATACGAAGAATGGATAAGTATTTTAAATAATGCAATGCAAGAAGAGTTTAACAAAGCAATGAATGGTGAAAACTATATAAATTCACAATGTGATCTTTCTGAAACAGCATTGAATTTATCATCAAATCGTTCTATGAGTACTAATAAATGTAATATTACTAATGGTGATAGTTTGGCTGCTGATATTGATTTAATCTATTCAA] [-] EMBL CD078759 [TTCGCAAGATTACTTGTTNCAAAGTTCCCAGGCAGGAATATATATGTTAGAAAATGTCAACATATAAATGAGGAATCGGAGACAAGTTACAGCTTGGTAGCTCAATAGTTTAACACGTTTTGGTGGAACGTTTTATATAGCATATATGTCCCCATCGTCATCTTCATCATCCGTTACATTAGTAGCAGGAACACTGGCGTTGTTTGACCCATTAATAGGTTGAGTGATTGTATGGCCATTCGTATC ] [-] EMBL CD115736 [ ACACTGGCGTTGTTTGACCCATTAATAGGTTGAGTGATTGTATGGCCATTCGTNTCAGACTCCTCCTCAGAACTTTCTGACTCTTNNNNNNNNNNTCTCTCAGCTGTGCAACAGTCACAAGAGAGCAACGAGCCAGTATTTTCGCACTCAGCTCGCGAGATACGAATTTTTTTGAAGGTCCTTTGTCGTACCAACCCAAAATAACGTCTTCTTCAATAACGTCGCAGTCGTACAACGTTTTAAGAAGATGACATGCCTTATCTACTAGGATTTTGATCTGAATGTCTCTCAATAAGCTTCGCCATGGCACCCCATGTATA AATTGGGCTCGTTTCTGATCTTCACCCGATCGAGTAAACAAGAGTAATAATGGGGAGTA TTCTTTATATCAGTCAGTATAGTAGAGGGATTATTAAACAACACCTCTGCGATAACCA ACACAGC ] [+] EMBL CD150335 [ c catgt cacCATAGGAGAGCAACGTGCCAGTATTTTCGCACTCAGCTCGCGAGATACGAATTTTTTTGAAGGTCCTTTGTCGTACCAACCCAAAATAACGTCTTCTTCAATAACGTCGCAGTCGTACAACGTTTTAAGAAGATGACATGCCTTATCTACTA GATTTTGATCTGAATGTCTCTCAATAAGCTTCGCCATGGCACCCCATGTATATATTTGGGCTCGTTTCTGATCTTCACCCGATCGAGTAAACAAGAGTAATAATGGGGAGTATTTCTTTATATCAGTCAGTATAGTAGAGGGATTATTAAACAACACCTCTGCGAAAACCACCCACAGCCCTCGCTCATTGAACTTTCATGATAAATTACGAAAGGAAAAATTGCAAACAATGAAGGAAACCGGATGCTATGTTCCTGAAGCATTTACAGAAGGAATGACGAAAGATTTAGAGAGAGAACGTCGAAGGCTTCAACTTGAAACTTGTGAATATCTGATCAAGGTGAATGAATTAAAAGCAAAGCGTGGTGCTGATCTCCTGCAGCATTTAATTGATTTCTTCTATGTACCAACTCATTACTTACGTGAATGGTTAGGTGTGATGGATCATTTTGGAAAATCAA ] [+] EMBL CD150415 [ TTGAACTTTCATGATAAATTACGAAAGGAAAAATTGCAAACAATGAAGGAAACCGGATGCTATGTTCCTGAAGCATTTACAGAAGGAATGACGAAAGATTTAGAGAGAGAACGTCGAAGGCTTCAACTTGAAACTTGTGAATATCTGATCAAGGTGAATGAATTAAAAGCAAAGCGTGGTGCTGATCTCCTGCAGCATTTAATTGATTTCTTCTATGTACAAACTCATTACTTACGTGAATGTTTAGGTGTGATGGATCATTTTGGAAAATCAATGAATGATTTATCTAATCGAGTAAATGAATTACACAAAATTAATGATATACAAAAACGTCGTCTTGTCGATACTCGAGAAGAAGTCAAGGGAGTCTTAGATAAAGAGTGTGATTCGATTTGTCGGAAATCCCGTCTATTCGGACAGTCAGTGCAAACTGGTGTCACGTATGCAGCACAACCAACTCCATTGAATCGAGCATTTGGAACTAAAAAAAGTGGATTTCTATTGAAAAAATCAGATGGAAAGGTTAAACGTGTTTGGCAACGTCGTCG ] [+] EMBL CD169004 [ CCCGTCTATTCGGACAGTCAGTGCAAACTGGTGTCACGTATGCAGCACAACCAACTCCATTGAATCGAGCATTTAGAACTAAAAAAAGTGGATTTCTATTGAAAAAATCAGATGGAAAGGTTAAACGTGTTTGGCAACGTCGTCGTGTACACATTGCTGATGGGGAATTATGTTTGTATCATGCAGATGAAAGTAAACCACCTGTACGCCTAACTTTACTCACTTGTCAAGTTAAATTACCTACGGAATGTATGGATAATGATTCAACTTTAAATCATAGTACTGGGGGTGGTAGTGCTGGTGGTAATCAACACTCGACAACTTCAGAAGGAAAACTTTACTTTGATCTTGTCTCAAATAGTCGAACATATAACTTCCAAGCAGAAGATGAACAAGAATACGAAGAATGGATAAGTATTTTAAATAATGCAATGCAAGAAGAGTTTAACAAAGCAATGAATGGTGAAAACTATATAAATTCACAATGTGATCTTTCTGAAACAGCATTGAATTTATCATCAAATCGTTCTATGAGTACTAATAAATGTAATATTACTAATGGTGATAGTTTGGCTGCTGATATTGATTTAATCTATTCAA] consensusID : consensus_8134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [ATTCTAAAGTGAATCAGGACTCAATGGGCGAGTGGATAACGCGATGGCGTTTGAAGCGAAAGGTACTGGATTCGAGTTCCAGAGTGAACATCAACTCTGAGATGCAGGTACATCCAGCTGACGAGTCCCAAATAAGACGAAACGCGCGTCAAACTGGATTTCACTGCTAGTCACTATCCATCTTTGCTTACAATGCTAGTGAATTAAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGAGACTGACCAGTTGCAGTCCTAAAAACATCAATGGGAAGATTCAAACAAACAATAGAAAGTGAATTAAAAAATGTTTATCTACCACGTCCGAATATAATGGCTCATGCTTCTAACTACAAAACATGAAGAGGTTGGTGTTCGATTCCAACCTTTATTGAACTGCATGGAATA] [+] EMBL CD087047 [ATTCTAAAGTGAATCAGGACTCAATGGGCGAGTGGATAACGCGATGGCGTTTGAAGCGAAAGGTACTGGATTCGAGTTCCAGAGTGAACATCAACTCTGAGATGCAGGTACATCCAGCTGACGAGTCCCAAATAAGACGAAACGCGCGTCAAACTGGATTTCACTGCTAGTCACTATCCATCTTTGCTTACAATGCTAGTGAATTAAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGAGACTGACCAGTTGCAGTCCTAAAAACATCAATGGGAAGATTCAAACAAACAATAGAAAGTGAATTAAAAAATGTTTATCTACCACGTCCGAATATAATGGCTCATGCTTCTAACTACAAAACATGAAGAGGTTGGTGTTCGATTCCAACCTTTATTGAACTGCATGGAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8134#0 TTCGCAAGATTACTTGTTNCAAAGTTCCCAGGCAGGAATATATATGTTAGAAAATGTCAA 60 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 CATATAAATGAGGAATCGGAGACAAGTTACAGCTTGGTAGCTCAATAGTTTAACACGTTT 120 consensus_8134#1 -------------ATTCTAAAGTGAATCAGGACTCAATGGGCGAGTGGAT-AACGCGATG 46 * ** * * * * ** * * * * * * *** ** * consensus_8134#0 TGGTGGAACGTTTTATATAGCATATATGTCCCCATCGTCATCTTCATCATCCGTTACATT 180 consensus_8134#1 GCGTTTGAAGCGAAAGGTACTGGATTCGAGTTC--CAGAGTGAACATCAACTCTGAGAT- 103 ** * * * ** ** * * * * ***** * * * ** consensus_8134#0 AGTAGCAGGAACACTGGCGTTGTTTGACCCATTAATAGGTTGAGTGATTGTATGGCCATT 240 consensus_8134#1 ----GCAGGTACATCCAGCTGACGAGTCCCA--AATAAGACGA---AACGCGCGTCAAAC 154 ***** *** * * **** **** * ** * * * * * consensus_8134#0 CGTATCAGACTCCTCCTCAGAACTTTCTGACTCTTNNNNNNNNNNTCTCTCAGCTGCAAA 300 consensus_8134#1 TGGATTTCACTGCTAGTCA---CTATCCA--TCTTTGCTTACAATGCTAGTGAAT-TAAG 208 * ** *** ** *** ** ** **** ** * ** consensus_8134#0 GTCACAAGAGAGCAACGAGC-CAGTATTTTCGCACTCAGCTCGCGAGATACGAATTTTTT 359 consensus_8134#1 GCTATATCGAGGCAATACGCACAGTATGCACATAT---GCCAATTAGAGACTGACCAGTT 265 * * * **** ** ****** * * ** *** ** * ** consensus_8134#0 TGAAGGTCCTTTGTCGTACCAACCCAAAATAACGTCTTCTTCAATAACGTCGCAGTCGTA 419 consensus_8134#1 GCAG---TCCTAAAAACATCAATGGGAAG---------ATTCAAACAAACAATAG----A 309 * * * * *** ** ***** * ** * consensus_8134#0 CAACGTTTTAAGAAGATGACATGCCTTATCTACTAGATTTTGATCTGAATGTCTCTCAAT 479 consensus_8134#1 AAGTGAATTAA-AAAATG------TTTATCTACCACGTCCGAATAT-AATGGCTC----- 356 * * **** ** *** ******** * * ** * **** *** consensus_8134#0 AAGCTTCGCCATGGCACCCCATGTATAAATTGG-GCTCGTTTCTGATCTTCACCCGATCG 538 consensus_8134#1 ATGCTTC-TAACTACAAAACATGAAGAGGTTGGTGTTCGATTCCAACCTTTATTGAACTG 415 * ***** * ** **** * * **** * *** *** * *** * * * consensus_8134#0 AGTAAACAAGAGTAATAATGGGGAGTATTCTTTATATCAGTCAGTATAGTAGAGGGATTA 598 consensus_8134#1 CATGGAATA--------------------------------------------------- 424 * * * consensus_8134#0 TTAAACAACACCTCTGCGATAACCAACACAGCCCTCGCTCATTGAACTTTCATGATAAAT 658 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 TACGAAAGGAAAAATTGCAAACAATGAAGGAAACCGGATGCTATGTTCCTGAAGCATTTA 718 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 CAGAAGGAATGACGAAAGATTTAGAGAGAGAACGTCGAAGGCTTCAACTTGAAACTTGTG 778 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 AATATCTGATCAAGGTGAATGAATTAAAAGCAAAGCGTGGTGCTGATCTCCTGCAGCATT 838 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 TAATTGATTTCTTCTATGTACCAACTCATTACTTACGTGAATGGTTAGGTGTGATGGATC 898 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 ATTTTGGAAAATCAATGAATGATTTATCTAATCGAGTAAATGAATTACACAAAATTAATG 958 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 ATATACAAAAACGTCGTCTTGTCGATACTCGAGAAGAAGTCAAGGGAGTCTTAGATAAAG 1018 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 AGTGTGATTCGATTTGTCGGAAATCCCGTCTATTCGGACAGTCAGTGCAAACTGGTGTCA 1078 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 CGTATGCAGCACAACCAACTCCATTGAATCGAGCATTTGGAACTAAAAAAAGTGGATTTC 1138 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 TATTGAAAAAATCAGATGGAAAGGTTAAACGTGTTTGGCAACGTCGTCGTGTACACATTG 1198 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 CTGATGGGGAATTATGTTTGTATCATGCAGATGAAAGTAAACCACCTGTACGCCTAACTT 1258 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 TACTCACTTGTCAAGTTAAATTACCTACGGAATGTATGGATAATGATTCAACTTTAAATC 1318 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 ATAGTACTGGGGGTGGTAGTGCTGGTGGTAATCAACACTCGACAACTTCAGAAGGAAAAC 1378 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 TTTACTTTGATCTTGTCTCAAATAGTCGAACATATAACTTCCAAGCAGAAGATGAACAAG 1438 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 AATACGAAGAATGGATAAGTATTTTAAATAATGCAATGCAAGAAGAGTTTAACAAAGCAA 1498 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 TGAATGGTGAAAACTATATAAATTCACAATGTGATCTTTCTGAAACAGCATTGAATTTAT 1558 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 CATCAAATCGTTCTATGAGTACTAATAAATGTAATATTACTAATGGTGATAGTTTGGCTG 1618 consensus_8134#1 ------------------------------------------------------------ consensus_8134#0 CTGATATTGATTTAATCTATTCAA 1642 consensus_8134#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||