|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1642 fasta sequence
[TTCGCAAGATTACTTGTTNCAAAGTTCCCAGGCAGGAATATATATGTTAGAAAATGTCAACATATAAATGAGGAATCGGAGACAAGTTACAGCTTGGTAGCTCAATAGTTTAACACGTTTTGGTGGAACGTTTTATATAGCATATATGTCCCCATCGTCATCTTCATCATCCGTTACATTAGTAGCAGGAACACTGGCGTTGTTTGACCCATTAATAGGTTGAGTGATTGTATGGCCATTCGTATCAGACTCCTCCTCAGAACTTTCTGACTCTTNNNNNNNNNNTCTCTCAGC--TGCAA-AGTCACAAGAGAGCAACGAGCCAGTATTTTCGCACTCAGCTCGCGAGATACGAATTTTTTTGAAGGTCCTTTGTCGTACCAACCCAAAATAACGTCTTCTTCAATAACGTCGCAGTCGTACAACGTTTTAAGAAGATGACATGCCTTATCTACTA-GATTTTGATCTGAATGTCTCTCAATAAGCTTCGCCATGGCACCCCATGTATA-AATTGGGCTCGTTTCTGATCTTCACCCGATCGAGTAAACAAGAGTAATAATGGGGAGTA-TTCTTTATATCAGTCAGTATAGTAGAGGGATTATTAAACAACACCTCTGCGATAACCA-ACACAGCCCTCGCTCATTGAACTTTCATGATAAATTACGAAAGGAAAAATTGCAAACAATGAAGGAAACCGGATGCTATGTTCCTGAAGCATTTACAGAAGGAATGACGAAAGATTTAGAGAGAGAACGTCGAAGGCTTCAACTTGAAACTTGTGAATATCTGATCAAGGTGAATGAATTAAAAGCAAAGCGTGGTGCTGATCTCCTGCAGCATTTAATTGATTTCTTCTATGTACCAACTCATTACTTACGTGAATGGTTAGGTGTGATGGATCATTTTGGAAAATCAATGAATGATTTATCTAATCGAGTAAATGAATTACACAAAATTAATGATATACAAAAACGTCGTCTTGTCGATACTCGAGAAGAAGTCAAGGGAGTCTTAGATAAAGAGTGTGATTCGATTTGTCGGAAATCCCGTCTATTCGGACAGTCAGTGCAAACTGGTGTCACGTATGCAGCACAACCAACTCCATTGAATCGAGCATTTGGAACTAAAAAAAGTGGATTTCTATTGAAAAAATCAGATGGAAAGGTTAAACGTGTTTGGCAACGTCGTCGTGTACACATTGCTGATGGGGAATTATGTTTGTATCATGCAGATGAAAGTAAACCACCTGTACGCCTAACTTTACTCACTTGTCAAGTTAAATTACCTACGGAATGTATGGATAATGATTCAACTTTAAATCATAGTACTGGGGGTGGTAGTGCTGGTGGTAATCAACACTCGACAACTTCAGAAGGAAAACTTTACTTTGATCTTGTCTCAAATAGTCGAACATATAACTTCCAAGCAGAAGATGAACAAGAATACGAAGAATGGATAAGTATTTTAAATAATGCAATGCAAGAAGAGTTTAACAAAGCAATGAATGGTGAAAACTATATAAATTCACAATGTGATCTTTCTGAAACAGCATTGAATTTATCATCAAATCGTTCTATGAGTACTAATAAATGTAATATTACTAATGGTGATAGTTTGGCTGCTGATATTGATTTAATCTATTCAA]
[-] EMBL CD078759 [TTCGCAAGATTACTTGTTNCAAAGTTCCCAGGCAGGAATATATATGTTAGAAAATGTCAACATATAAATGAGGAATCGGAGACAAGTTACAGCTTGGTAGCTCAATAGTTTAACACGTTTTGGTGGAACGTTTTATATAGCATATATGTCCCCATCGTCATCTTCATCATCCGTTACATTAGTAGCAGGAACACTGGCGTTGTTTGACCCATTAATAGGTTGAGTGATTGTATGGCCATTCGTATC ]
[-] EMBL CD115736 [ ACACTGGCGTTGTTTGACCCATTAATAGGTTGAGTGATTGTATGGCCATTCGTNTCAGACTCCTCCTCAGAACTTTCTGACTCTTNNNNNNNNNNTCTCTCAGCTGTGCAACAGTCACAAGAGAGCAACGAGCCAGTATTTTCGCACTCAGCTCGCGAGATACGAATTTTTTTGAAGGTCCTTTGTCGTACCAACCCAAAATAACGTCTTCTTCAATAACGTCGCAGTCGTACAACGTTTTAAGAAGATGACATGCCTTATCTACTAGGATTTTGATCTGAATGTCTCTCAATAAGCTTCGCCATGGCACCCCATGTATA AATTGGGCTCGTTTCTGATCTTCACCCGATCGAGTAAACAAGAGTAATAATGGGGAGTA TTCTTTATATCAGTCAGTATAGTAGAGGGATTATTAAACAACACCTCTGCGATAACCA ACACAGC ]
[+] EMBL CD150335 [ c catgt cacCATAGGAGAGCAACGTGCCAGTATTTTCGCACTCAGCTCGCGAGATACGAATTTTTTTGAAGGTCCTTTGTCGTACCAACCCAAAATAACGTCTTCTTCAATAACGTCGCAGTCGTACAACGTTTTAAGAAGATGACATGCCTTATCTACTA GATTTTGATCTGAATGTCTCTCAATAAGCTTCGCCATGGCACCCCATGTATATATTTGGGCTCGTTTCTGATCTTCACCCGATCGAGTAAACAAGAGTAATAATGGGGAGTATTTCTTTATATCAGTCAGTATAGTAGAGGGATTATTAAACAACACCTCTGCGAAAACCACCCACAGCCCTCGCTCATTGAACTTTCATGATAAATTACGAAAGGAAAAATTGCAAACAATGAAGGAAACCGGATGCTATGTTCCTGAAGCATTTACAGAAGGAATGACGAAAGATTTAGAGAGAGAACGTCGAAGGCTTCAACTTGAAACTTGTGAATATCTGATCAAGGTGAATGAATTAAAAGCAAAGCGTGGTGCTGATCTCCTGCAGCATTTAATTGATTTCTTCTATGTACCAACTCATTACTTACGTGAATGGTTAGGTGTGATGGATCATTTTGGAAAATCAA ]
[+] EMBL CD150415 [ TTGAACTTTCATGATAAATTACGAAAGGAAAAATTGCAAACAATGAAGGAAACCGGATGCTATGTTCCTGAAGCATTTACAGAAGGAATGACGAAAGATTTAGAGAGAGAACGTCGAAGGCTTCAACTTGAAACTTGTGAATATCTGATCAAGGTGAATGAATTAAAAGCAAAGCGTGGTGCTGATCTCCTGCAGCATTTAATTGATTTCTTCTATGTACAAACTCATTACTTACGTGAATGTTTAGGTGTGATGGATCATTTTGGAAAATCAATGAATGATTTATCTAATCGAGTAAATGAATTACACAAAATTAATGATATACAAAAACGTCGTCTTGTCGATACTCGAGAAGAAGTCAAGGGAGTCTTAGATAAAGAGTGTGATTCGATTTGTCGGAAATCCCGTCTATTCGGACAGTCAGTGCAAACTGGTGTCACGTATGCAGCACAACCAACTCCATTGAATCGAGCATTTGGAACTAAAAAAAGTGGATTTCTATTGAAAAAATCAGATGGAAAGGTTAAACGTGTTTGGCAACGTCGTCG ]
[+] EMBL CD169004 [ CCCGTCTATTCGGACAGTCAGTGCAAACTGGTGTCACGTATGCAGCACAACCAACTCCATTGAATCGAGCATTTAGAACTAAAAAAAGTGGATTTCTATTGAAAAAATCAGATGGAAAGGTTAAACGTGTTTGGCAACGTCGTCGTGTACACATTGCTGATGGGGAATTATGTTTGTATCATGCAGATGAAAGTAAACCACCTGTACGCCTAACTTTACTCACTTGTCAAGTTAAATTACCTACGGAATGTATGGATAATGATTCAACTTTAAATCATAGTACTGGGGGTGGTAGTGCTGGTGGTAATCAACACTCGACAACTTCAGAAGGAAAACTTTACTTTGATCTTGTCTCAAATAGTCGAACATATAACTTCCAAGCAGAAGATGAACAAGAATACGAAGAATGGATAAGTATTTTAAATAATGCAATGCAAGAAGAGTTTAACAAAGCAATGAATGGTGAAAACTATATAAATTCACAATGTGATCTTTCTGAAACAGCATTGAATTTATCATCAAATCGTTCTATGAGTACTAATAAATGTAATATTACTAATGGTGATAGTTTGGCTGCTGATATTGATTTAATCTATTCAA]
consensusID : consensus_8134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence
[ATTCTAAAGTGAATCAGGACTCAATGGGCGAGTGGATAACGCGATGGCGTTTGAAGCGAAAGGTACTGGATTCGAGTTCCAGAGTGAACATCAACTCTGAGATGCAGGTACATCCAGCTGACGAGTCCCAAATAAGACGAAACGCGCGTCAAACTGGATTTCACTGCTAGTCACTATCCATCTTTGCTTACAATGCTAGTGAATTAAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGAGACTGACCAGTTGCAGTCCTAAAAACATCAATGGGAAGATTCAAACAAACAATAGAAAGTGAATTAAAAAATGTTTATCTACCACGTCCGAATATAATGGCTCATGCTTCTAACTACAAAACATGAAGAGGTTGGTGTTCGATTCCAACCTTTATTGAACTGCATGGAATA]
[+] EMBL CD087047 [ATTCTAAAGTGAATCAGGACTCAATGGGCGAGTGGATAACGCGATGGCGTTTGAAGCGAAAGGTACTGGATTCGAGTTCCAGAGTGAACATCAACTCTGAGATGCAGGTACATCCAGCTGACGAGTCCCAAATAAGACGAAACGCGCGTCAAACTGGATTTCACTGCTAGTCACTATCCATCTTTGCTTACAATGCTAGTGAATTAAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGAGACTGACCAGTTGCAGTCCTAAAAACATCAATGGGAAGATTCAAACAAACAATAGAAAGTGAATTAAAAAATGTTTATCTACCACGTCCGAATATAATGGCTCATGCTTCTAACTACAAAACATGAAGAGGTTGGTGTTCGATTCCAACCTTTATTGAACTGCATGGAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8134#0 TTCGCAAGATTACTTGTTNCAAAGTTCCCAGGCAGGAATATATATGTTAGAAAATGTCAA 60
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 CATATAAATGAGGAATCGGAGACAAGTTACAGCTTGGTAGCTCAATAGTTTAACACGTTT 120
consensus_8134#1 -------------ATTCTAAAGTGAATCAGGACTCAATGGGCGAGTGGAT-AACGCGATG 46
* ** * * * * ** * * * * * * *** ** *
consensus_8134#0 TGGTGGAACGTTTTATATAGCATATATGTCCCCATCGTCATCTTCATCATCCGTTACATT 180
consensus_8134#1 GCGTTTGAAGCGAAAGGTACTGGATTCGAGTTC--CAGAGTGAACATCAACTCTGAGAT- 103
** * * * ** ** * * * * ***** * * * **
consensus_8134#0 AGTAGCAGGAACACTGGCGTTGTTTGACCCATTAATAGGTTGAGTGATTGTATGGCCATT 240
consensus_8134#1 ----GCAGGTACATCCAGCTGACGAGTCCCA--AATAAGACGA---AACGCGCGTCAAAC 154
***** *** * * **** **** * ** * * * * *
consensus_8134#0 CGTATCAGACTCCTCCTCAGAACTTTCTGACTCTTNNNNNNNNNNTCTCTCAGCTGCAAA 300
consensus_8134#1 TGGATTTCACTGCTAGTCA---CTATCCA--TCTTTGCTTACAATGCTAGTGAAT-TAAG 208
* ** *** ** *** ** ** **** ** * **
consensus_8134#0 GTCACAAGAGAGCAACGAGC-CAGTATTTTCGCACTCAGCTCGCGAGATACGAATTTTTT 359
consensus_8134#1 GCTATATCGAGGCAATACGCACAGTATGCACATAT---GCCAATTAGAGACTGACCAGTT 265
* * * **** ** ****** * * ** *** ** * **
consensus_8134#0 TGAAGGTCCTTTGTCGTACCAACCCAAAATAACGTCTTCTTCAATAACGTCGCAGTCGTA 419
consensus_8134#1 GCAG---TCCTAAAAACATCAATGGGAAG---------ATTCAAACAAACAATAG----A 309
* * * * *** ** ***** * ** *
consensus_8134#0 CAACGTTTTAAGAAGATGACATGCCTTATCTACTAGATTTTGATCTGAATGTCTCTCAAT 479
consensus_8134#1 AAGTGAATTAA-AAAATG------TTTATCTACCACGTCCGAATAT-AATGGCTC----- 356
* * **** ** *** ******** * * ** * **** ***
consensus_8134#0 AAGCTTCGCCATGGCACCCCATGTATAAATTGG-GCTCGTTTCTGATCTTCACCCGATCG 538
consensus_8134#1 ATGCTTC-TAACTACAAAACATGAAGAGGTTGGTGTTCGATTCCAACCTTTATTGAACTG 415
* ***** * ** **** * * **** * *** *** * *** * * *
consensus_8134#0 AGTAAACAAGAGTAATAATGGGGAGTATTCTTTATATCAGTCAGTATAGTAGAGGGATTA 598
consensus_8134#1 CATGGAATA--------------------------------------------------- 424
* * *
consensus_8134#0 TTAAACAACACCTCTGCGATAACCAACACAGCCCTCGCTCATTGAACTTTCATGATAAAT 658
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 TACGAAAGGAAAAATTGCAAACAATGAAGGAAACCGGATGCTATGTTCCTGAAGCATTTA 718
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 CAGAAGGAATGACGAAAGATTTAGAGAGAGAACGTCGAAGGCTTCAACTTGAAACTTGTG 778
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 AATATCTGATCAAGGTGAATGAATTAAAAGCAAAGCGTGGTGCTGATCTCCTGCAGCATT 838
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 TAATTGATTTCTTCTATGTACCAACTCATTACTTACGTGAATGGTTAGGTGTGATGGATC 898
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 ATTTTGGAAAATCAATGAATGATTTATCTAATCGAGTAAATGAATTACACAAAATTAATG 958
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 ATATACAAAAACGTCGTCTTGTCGATACTCGAGAAGAAGTCAAGGGAGTCTTAGATAAAG 1018
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 AGTGTGATTCGATTTGTCGGAAATCCCGTCTATTCGGACAGTCAGTGCAAACTGGTGTCA 1078
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 CGTATGCAGCACAACCAACTCCATTGAATCGAGCATTTGGAACTAAAAAAAGTGGATTTC 1138
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 TATTGAAAAAATCAGATGGAAAGGTTAAACGTGTTTGGCAACGTCGTCGTGTACACATTG 1198
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 CTGATGGGGAATTATGTTTGTATCATGCAGATGAAAGTAAACCACCTGTACGCCTAACTT 1258
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 TACTCACTTGTCAAGTTAAATTACCTACGGAATGTATGGATAATGATTCAACTTTAAATC 1318
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 ATAGTACTGGGGGTGGTAGTGCTGGTGGTAATCAACACTCGACAACTTCAGAAGGAAAAC 1378
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 TTTACTTTGATCTTGTCTCAAATAGTCGAACATATAACTTCCAAGCAGAAGATGAACAAG 1438
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 AATACGAAGAATGGATAAGTATTTTAAATAATGCAATGCAAGAAGAGTTTAACAAAGCAA 1498
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 TGAATGGTGAAAACTATATAAATTCACAATGTGATCTTTCTGAAACAGCATTGAATTTAT 1558
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 CATCAAATCGTTCTATGAGTACTAATAAATGTAATATTACTAATGGTGATAGTTTGGCTG 1618
consensus_8134#1 ------------------------------------------------------------
consensus_8134#0 CTGATATTGATTTAATCTATTCAA 1642
consensus_8134#1 ------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||