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Schistosoma mansoni
cluster # 8134 cluster # 8134       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8134#0 length = 1642 sequences # 5  
consensus_8134#1 length = 424 sequences # 1  

consensusID : consensus_8134#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1642
fasta sequence
                              [TTCGCAAGATTACTTGTTNCAAAGTTCCCAGGCAGGAATATATATGTTAGAAAATGTCAACATATAAATGAGGAATCGGAGACAAGTTACAGCTTGGTAGCTCAATAGTTTAACACGTTTTGGTGGAACGTTTTATATAGCATATATGTCCCCATCGTCATCTTCATCATCCGTTACATTAGTAGCAGGAACACTGGCGTTGTTTGACCCATTAATAGGTTGAGTGATTGTATGGCCATTCGTATCAGACTCCTCCTCAGAACTTTCTGACTCTTNNNNNNNNNNTCTCTCAGC--TGCAA-AGTCACAAGAGAGCAACGAGCCAGTATTTTCGCACTCAGCTCGCGAGATACGAATTTTTTTGAAGGTCCTTTGTCGTACCAACCCAAAATAACGTCTTCTTCAATAACGTCGCAGTCGTACAACGTTTTAAGAAGATGACATGCCTTATCTACTA-GATTTTGATCTGAATGTCTCTCAATAAGCTTCGCCATGGCACCCCATGTATA-AATTGGGCTCGTTTCTGATCTTCACCCGATCGAGTAAACAAGAGTAATAATGGGGAGTA-TTCTTTATATCAGTCAGTATAGTAGAGGGATTATTAAACAACACCTCTGCGATAACCA-ACACAGCCCTCGCTCATTGAACTTTCATGATAAATTACGAAAGGAAAAATTGCAAACAATGAAGGAAACCGGATGCTATGTTCCTGAAGCATTTACAGAAGGAATGACGAAAGATTTAGAGAGAGAACGTCGAAGGCTTCAACTTGAAACTTGTGAATATCTGATCAAGGTGAATGAATTAAAAGCAAAGCGTGGTGCTGATCTCCTGCAGCATTTAATTGATTTCTTCTATGTACCAACTCATTACTTACGTGAATGGTTAGGTGTGATGGATCATTTTGGAAAATCAATGAATGATTTATCTAATCGAGTAAATGAATTACACAAAATTAATGATATACAAAAACGTCGTCTTGTCGATACTCGAGAAGAAGTCAAGGGAGTCTTAGATAAAGAGTGTGATTCGATTTGTCGGAAATCCCGTCTATTCGGACAGTCAGTGCAAACTGGTGTCACGTATGCAGCACAACCAACTCCATTGAATCGAGCATTTGGAACTAAAAAAAGTGGATTTCTATTGAAAAAATCAGATGGAAAGGTTAAACGTGTTTGGCAACGTCGTCGTGTACACATTGCTGATGGGGAATTATGTTTGTATCATGCAGATGAAAGTAAACCACCTGTACGCCTAACTTTACTCACTTGTCAAGTTAAATTACCTACGGAATGTATGGATAATGATTCAACTTTAAATCATAGTACTGGGGGTGGTAGTGCTGGTGGTAATCAACACTCGACAACTTCAGAAGGAAAACTTTACTTTGATCTTGTCTCAAATAGTCGAACATATAACTTCCAAGCAGAAGATGAACAAGAATACGAAGAATGGATAAGTATTTTAAATAATGCAATGCAAGAAGAGTTTAACAAAGCAATGAATGGTGAAAACTATATAAATTCACAATGTGATCTTTCTGAAACAGCATTGAATTTATCATCAAATCGTTCTATGAGTACTAATAAATGTAATATTACTAATGGTGATAGTTTGGCTGCTGATATTGATTTAATCTATTCAA]

[-] EMBL CD078759             [TTCGCAAGATTACTTGTTNCAAAGTTCCCAGGCAGGAATATATATGTTAGAAAATGTCAACATATAAATGAGGAATCGGAGACAAGTTACAGCTTGGTAGCTCAATAGTTTAACACGTTTTGGTGGAACGTTTTATATAGCATATATGTCCCCATCGTCATCTTCATCATCCGTTACATTAGTAGCAGGAACACTGGCGTTGTTTGACCCATTAATAGGTTGAGTGATTGTATGGCCATTCGTATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD115736             [                                                                                                                                                                                              ACACTGGCGTTGTTTGACCCATTAATAGGTTGAGTGATTGTATGGCCATTCGTNTCAGACTCCTCCTCAGAACTTTCTGACTCTTNNNNNNNNNNTCTCTCAGCTGTGCAACAGTCACAAGAGAGCAACGAGCCAGTATTTTCGCACTCAGCTCGCGAGATACGAATTTTTTTGAAGGTCCTTTGTCGTACCAACCCAAAATAACGTCTTCTTCAATAACGTCGCAGTCGTACAACGTTTTAAGAAGATGACATGCCTTATCTACTAGGATTTTGATCTGAATGTCTCTCAATAAGCTTCGCCATGGCACCCCATGTATA AATTGGGCTCGTTTCTGATCTTCACCCGATCGAGTAAACAAGAGTAATAATGGGGAGTA TTCTTTATATCAGTCAGTATAGTAGAGGGATTATTAAACAACACCTCTGCGATAACCA ACACAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD150335             [                                                                                                                                                                                                                                                                                                     c  catgt cacCATAGGAGAGCAACGTGCCAGTATTTTCGCACTCAGCTCGCGAGATACGAATTTTTTTGAAGGTCCTTTGTCGTACCAACCCAAAATAACGTCTTCTTCAATAACGTCGCAGTCGTACAACGTTTTAAGAAGATGACATGCCTTATCTACTA GATTTTGATCTGAATGTCTCTCAATAAGCTTCGCCATGGCACCCCATGTATATATTTGGGCTCGTTTCTGATCTTCACCCGATCGAGTAAACAAGAGTAATAATGGGGAGTATTTCTTTATATCAGTCAGTATAGTAGAGGGATTATTAAACAACACCTCTGCGAAAACCACCCACAGCCCTCGCTCATTGAACTTTCATGATAAATTACGAAAGGAAAAATTGCAAACAATGAAGGAAACCGGATGCTATGTTCCTGAAGCATTTACAGAAGGAATGACGAAAGATTTAGAGAGAGAACGTCGAAGGCTTCAACTTGAAACTTGTGAATATCTGATCAAGGTGAATGAATTAAAAGCAAAGCGTGGTGCTGATCTCCTGCAGCATTTAATTGATTTCTTCTATGTACCAACTCATTACTTACGTGAATGGTTAGGTGTGATGGATCATTTTGGAAAATCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD150415             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTGAACTTTCATGATAAATTACGAAAGGAAAAATTGCAAACAATGAAGGAAACCGGATGCTATGTTCCTGAAGCATTTACAGAAGGAATGACGAAAGATTTAGAGAGAGAACGTCGAAGGCTTCAACTTGAAACTTGTGAATATCTGATCAAGGTGAATGAATTAAAAGCAAAGCGTGGTGCTGATCTCCTGCAGCATTTAATTGATTTCTTCTATGTACAAACTCATTACTTACGTGAATGTTTAGGTGTGATGGATCATTTTGGAAAATCAATGAATGATTTATCTAATCGAGTAAATGAATTACACAAAATTAATGATATACAAAAACGTCGTCTTGTCGATACTCGAGAAGAAGTCAAGGGAGTCTTAGATAAAGAGTGTGATTCGATTTGTCGGAAATCCCGTCTATTCGGACAGTCAGTGCAAACTGGTGTCACGTATGCAGCACAACCAACTCCATTGAATCGAGCATTTGGAACTAAAAAAAGTGGATTTCTATTGAAAAAATCAGATGGAAAGGTTAAACGTGTTTGGCAACGTCGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD169004             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCCGTCTATTCGGACAGTCAGTGCAAACTGGTGTCACGTATGCAGCACAACCAACTCCATTGAATCGAGCATTTAGAACTAAAAAAAGTGGATTTCTATTGAAAAAATCAGATGGAAAGGTTAAACGTGTTTGGCAACGTCGTCGTGTACACATTGCTGATGGGGAATTATGTTTGTATCATGCAGATGAAAGTAAACCACCTGTACGCCTAACTTTACTCACTTGTCAAGTTAAATTACCTACGGAATGTATGGATAATGATTCAACTTTAAATCATAGTACTGGGGGTGGTAGTGCTGGTGGTAATCAACACTCGACAACTTCAGAAGGAAAACTTTACTTTGATCTTGTCTCAAATAGTCGAACATATAACTTCCAAGCAGAAGATGAACAAGAATACGAAGAATGGATAAGTATTTTAAATAATGCAATGCAAGAAGAGTTTAACAAAGCAATGAATGGTGAAAACTATATAAATTCACAATGTGATCTTTCTGAAACAGCATTGAATTTATCATCAAATCGTTCTATGAGTACTAATAAATGTAATATTACTAATGGTGATAGTTTGGCTGCTGATATTGATTTAATCTATTCAA]


>consensus_8134#0 TTCGCAAGATTACTTGTTNCAAAGTTCCCAGGCAGGAATATATATGTTAGAAAATGTCAA CATATAAATGAGGAATCGGAGACAAGTTACAGCTTGGTAGCTCAATAGTTTAACACGTTT TGGTGGAACGTTTTATATAGCATATATGTCCCCATCGTCATCTTCATCATCCGTTACATT AGTAGCAGGAACACTGGCGTTGTTTGACCCATTAATAGGTTGAGTGATTGTATGGCCATT CGTATCAGACTCCTCCTCAGAACTTTCTGACTCTTNNNNNNNNNNTCTCTCAGCTGCAAA GTCACAAGAGAGCAACGAGCCAGTATTTTCGCACTCAGCTCGCGAGATACGAATTTTTTT GAAGGTCCTTTGTCGTACCAACCCAAAATAACGTCTTCTTCAATAACGTCGCAGTCGTAC AACGTTTTAAGAAGATGACATGCCTTATCTACTAGATTTTGATCTGAATGTCTCTCAATA AGCTTCGCCATGGCACCCCATGTATAAATTGGGCTCGTTTCTGATCTTCACCCGATCGAG TAAACAAGAGTAATAATGGGGAGTATTCTTTATATCAGTCAGTATAGTAGAGGGATTATT AAACAACACCTCTGCGATAACCAACACAGCCCTCGCTCATTGAACTTTCATGATAAATTA CGAAAGGAAAAATTGCAAACAATGAAGGAAACCGGATGCTATGTTCCTGAAGCATTTACA GAAGGAATGACGAAAGATTTAGAGAGAGAACGTCGAAGGCTTCAACTTGAAACTTGTGAA TATCTGATCAAGGTGAATGAATTAAAAGCAAAGCGTGGTGCTGATCTCCTGCAGCATTTA ATTGATTTCTTCTATGTACCAACTCATTACTTACGTGAATGGTTAGGTGTGATGGATCAT TTTGGAAAATCAATGAATGATTTATCTAATCGAGTAAATGAATTACACAAAATTAATGAT ATACAAAAACGTCGTCTTGTCGATACTCGAGAAGAAGTCAAGGGAGTCTTAGATAAAGAG TGTGATTCGATTTGTCGGAAATCCCGTCTATTCGGACAGTCAGTGCAAACTGGTGTCACG TATGCAGCACAACCAACTCCATTGAATCGAGCATTTGGAACTAAAAAAAGTGGATTTCTA TTGAAAAAATCAGATGGAAAGGTTAAACGTGTTTGGCAACGTCGTCGTGTACACATTGCT GATGGGGAATTATGTTTGTATCATGCAGATGAAAGTAAACCACCTGTACGCCTAACTTTA CTCACTTGTCAAGTTAAATTACCTACGGAATGTATGGATAATGATTCAACTTTAAATCAT AGTACTGGGGGTGGTAGTGCTGGTGGTAATCAACACTCGACAACTTCAGAAGGAAAACTT TACTTTGATCTTGTCTCAAATAGTCGAACATATAACTTCCAAGCAGAAGATGAACAAGAA TACGAAGAATGGATAAGTATTTTAAATAATGCAATGCAAGAAGAGTTTAACAAAGCAATG AATGGTGAAAACTATATAAATTCACAATGTGATCTTTCTGAAACAGCATTGAATTTATCA TCAAATCGTTCTATGAGTACTAATAAATGTAATATTACTAATGGTGATAGTTTGGCTGCT GATATTGATTTAATCTATTCAA



consensusID : consensus_8134#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence
                              [ATTCTAAAGTGAATCAGGACTCAATGGGCGAGTGGATAACGCGATGGCGTTTGAAGCGAAAGGTACTGGATTCGAGTTCCAGAGTGAACATCAACTCTGAGATGCAGGTACATCCAGCTGACGAGTCCCAAATAAGACGAAACGCGCGTCAAACTGGATTTCACTGCTAGTCACTATCCATCTTTGCTTACAATGCTAGTGAATTAAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGAGACTGACCAGTTGCAGTCCTAAAAACATCAATGGGAAGATTCAAACAAACAATAGAAAGTGAATTAAAAAATGTTTATCTACCACGTCCGAATATAATGGCTCATGCTTCTAACTACAAAACATGAAGAGGTTGGTGTTCGATTCCAACCTTTATTGAACTGCATGGAATA]

[+] EMBL CD087047             [ATTCTAAAGTGAATCAGGACTCAATGGGCGAGTGGATAACGCGATGGCGTTTGAAGCGAAAGGTACTGGATTCGAGTTCCAGAGTGAACATCAACTCTGAGATGCAGGTACATCCAGCTGACGAGTCCCAAATAAGACGAAACGCGCGTCAAACTGGATTTCACTGCTAGTCACTATCCATCTTTGCTTACAATGCTAGTGAATTAAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGAGACTGACCAGTTGCAGTCCTAAAAACATCAATGGGAAGATTCAAACAAACAATAGAAAGTGAATTAAAAAATGTTTATCTACCACGTCCGAATATAATGGCTCATGCTTCTAACTACAAAACATGAAGAGGTTGGTGTTCGATTCCAACCTTTATTGAACTGCATGGAATA]


>consensus_8134#1 ATTCTAAAGTGAATCAGGACTCAATGGGCGAGTGGATAACGCGATGGCGTTTGAAGCGAA AGGTACTGGATTCGAGTTCCAGAGTGAACATCAACTCTGAGATGCAGGTACATCCAGCTG ACGAGTCCCAAATAAGACGAAACGCGCGTCAAACTGGATTTCACTGCTAGTCACTATCCA TCTTTGCTTACAATGCTAGTGAATTAAGGCTATATCGAGGCAATACGCACAGTATGCACA TATGCCAATTAGAGACTGACCAGTTGCAGTCCTAAAAACATCAATGGGAAGATTCAAACA AACAATAGAAAGTGAATTAAAAAATGTTTATCTACCACGTCCGAATATAATGGCTCATGC TTCTAACTACAAAACATGAAGAGGTTGGTGTTCGATTCCAACCTTTATTGAACTGCATGG AATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8134#0      TTCGCAAGATTACTTGTTNCAAAGTTCCCAGGCAGGAATATATATGTTAGAAAATGTCAA 60
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      CATATAAATGAGGAATCGGAGACAAGTTACAGCTTGGTAGCTCAATAGTTTAACACGTTT 120
consensus_8134#1      -------------ATTCTAAAGTGAATCAGGACTCAATGGGCGAGTGGAT-AACGCGATG 46
                                   * **  *    * * *   **   * *   * * * * *** ** * 

consensus_8134#0      TGGTGGAACGTTTTATATAGCATATATGTCCCCATCGTCATCTTCATCATCCGTTACATT 180
consensus_8134#1      GCGTTTGAAGCGAAAGGTACTGGATTCGAGTTC--CAGAGTGAACATCAACTCTGAGAT- 103
                        **   * *    *  **    **  *    *  *    *   ***** *  * * ** 

consensus_8134#0      AGTAGCAGGAACACTGGCGTTGTTTGACCCATTAATAGGTTGAGTGATTGTATGGCCATT 240
consensus_8134#1      ----GCAGGTACATCCAGCTGACGAGTCCCA--AATAAGACGA---AACGCGCGTCAAAC 154
                          ***** ***      *     * ****  **** *  **   *  *   * * *  

consensus_8134#0      CGTATCAGACTCCTCCTCAGAACTTTCTGACTCTTNNNNNNNNNNTCTCTCAGCTGCAAA 300
consensus_8134#1      TGGATTTCACTGCTAGTCA---CTATCCA--TCTTTGCTTACAATGCTAGTGAAT-TAAG 208
                       * **   *** **  ***   ** **    ****           **      *  ** 

consensus_8134#0      GTCACAAGAGAGCAACGAGC-CAGTATTTTCGCACTCAGCTCGCGAGATACGAATTTTTT 359
consensus_8134#1      GCTATATCGAGGCAATACGCACAGTATGCACATAT---GCCAATTAGAGACTGACCAGTT 265
                      *  * *     ****   ** ******   *  *    **     *** **  *    **

consensus_8134#0      TGAAGGTCCTTTGTCGTACCAACCCAAAATAACGTCTTCTTCAATAACGTCGCAGTCGTA 419
consensus_8134#1      GCAG---TCCTAAAAACATCAATGGGAAG---------ATTCAAACAAACAATAG----A 309
                        *     * *      * ***    **           *****  *      **    *

consensus_8134#0      CAACGTTTTAAGAAGATGACATGCCTTATCTACTAGATTTTGATCTGAATGTCTCTCAAT 479
consensus_8134#1      AAGTGAATTAA-AAAATG------TTTATCTACCACGTCCGAATAT-AATGGCTC----- 356
                       *  *  **** ** ***       ******** *  *    ** * **** ***     

consensus_8134#0      AAGCTTCGCCATGGCACCCCATGTATAAATTGG-GCTCGTTTCTGATCTTCACCCGATCG 538
consensus_8134#1      ATGCTTC-TAACTACAAAACATGAAGAGGTTGGTGTTCGATTCCAACCTTTATTGAACTG 415
                      * *****   *   **   **** * *  **** * *** ***  * *** *    *  *

consensus_8134#0      AGTAAACAAGAGTAATAATGGGGAGTATTCTTTATATCAGTCAGTATAGTAGAGGGATTA 598
consensus_8134#1      CATGGAATA--------------------------------------------------- 424
                        *  *  *                                                   

consensus_8134#0      TTAAACAACACCTCTGCGATAACCAACACAGCCCTCGCTCATTGAACTTTCATGATAAAT 658
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      TACGAAAGGAAAAATTGCAAACAATGAAGGAAACCGGATGCTATGTTCCTGAAGCATTTA 718
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      CAGAAGGAATGACGAAAGATTTAGAGAGAGAACGTCGAAGGCTTCAACTTGAAACTTGTG 778
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      AATATCTGATCAAGGTGAATGAATTAAAAGCAAAGCGTGGTGCTGATCTCCTGCAGCATT 838
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      TAATTGATTTCTTCTATGTACCAACTCATTACTTACGTGAATGGTTAGGTGTGATGGATC 898
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      ATTTTGGAAAATCAATGAATGATTTATCTAATCGAGTAAATGAATTACACAAAATTAATG 958
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      ATATACAAAAACGTCGTCTTGTCGATACTCGAGAAGAAGTCAAGGGAGTCTTAGATAAAG 1018
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      AGTGTGATTCGATTTGTCGGAAATCCCGTCTATTCGGACAGTCAGTGCAAACTGGTGTCA 1078
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      CGTATGCAGCACAACCAACTCCATTGAATCGAGCATTTGGAACTAAAAAAAGTGGATTTC 1138
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      TATTGAAAAAATCAGATGGAAAGGTTAAACGTGTTTGGCAACGTCGTCGTGTACACATTG 1198
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      CTGATGGGGAATTATGTTTGTATCATGCAGATGAAAGTAAACCACCTGTACGCCTAACTT 1258
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      TACTCACTTGTCAAGTTAAATTACCTACGGAATGTATGGATAATGATTCAACTTTAAATC 1318
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      ATAGTACTGGGGGTGGTAGTGCTGGTGGTAATCAACACTCGACAACTTCAGAAGGAAAAC 1378
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      TTTACTTTGATCTTGTCTCAAATAGTCGAACATATAACTTCCAAGCAGAAGATGAACAAG 1438
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      AATACGAAGAATGGATAAGTATTTTAAATAATGCAATGCAAGAAGAGTTTAACAAAGCAA 1498
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      TGAATGGTGAAAACTATATAAATTCACAATGTGATCTTTCTGAAACAGCATTGAATTTAT 1558
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      CATCAAATCGTTCTATGAGTACTAATAAATGTAATATTACTAATGGTGATAGTTTGGCTG 1618
consensus_8134#1      ------------------------------------------------------------
                                                                                  

consensus_8134#0      CTGATATTGATTTAATCTATTCAA 1642
consensus_8134#1      ------------------------
                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)