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Schistosoma mansoni
cluster # 8143 cluster # 8143       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8143#0 length = 1538 sequences # 5  
consensus_8143#1 length = 540 sequences # 1  

consensusID : consensus_8143#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1538
fasta sequence
                              [TCTTCAGAAACGGCTGATTCGTTAGATCGTGGTGGTTGTGAAGGTCTACTTCGTGCAGCTCTGCGCCTAAGCAATCCCCCACCACTTTCATTGTCATATAAAAAAATCAGCAATATTACTACCACAACTAACATCACTGATAATACTATCACTGTTTCAAATGACGAATGGAATTGTAAATTTTTACCATTCTCAAATTCAAAATATTATTTATTTCAAAAGTTGGTCAGTGCAAACAGTTTGCAAAATAGTTTATGTGCCCAACTAATTTTAAGTTTAGGATTTACATTGGATCCAAGTTTAATTGAATACTTATTATTCTATCTGTGCTGCTGGAGGTGTGTAAAAACGAAAACCAATCCCAATGAAAATTCATTTACATCACGAGCCTCAGTGAAATCCGCCAAATCATCATCATTTGCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACAACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATTCTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAATCATCAAATGGATTCAACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGCCTAGTTTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGAAATCTGCTATGGTTAGTGAATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGAGCACAGCTAGGCGAAATCGTGAACATGATGCTGAAAAATGATGATCTTCAATGTTTAGACTTGCTGATTAGTCTTTGTGAATGTATATTCTGTACATTTCGGTTTCCTCCAACTAATCGTTTGTCACCTTCAACCACCACCACACTTAATCAATCTATGAAGCTAAGTGAATCAAGCCATTATTACCACTTGACACGGTTTCGTGATGGATCAAAAAACTCTGGTGGTTTAAATACTAATGGTCATCTGCGCTATCATTATGGTAACCATCAAACATTCGGCGTAATACTTCTATCACCTACCCAATGTATGCAATTAGCTAATAGTTTTGTACAGTTAACATCTCGATTGATGTTCATGATGAATGATGCGAACTTACCCAGTGAATCATCATCATTGTCTTCGTGTACCCATTTGTATGTATTTGGTCGATCTCGAAATCTATTGAATTTATTATTCAGCACTATTCAATCAACAATTTTCCGTTCAGCTATTATGAGGTTAATTCCAAAAGTGATAATGTCTAGTCGTTTATATCCGTACACGGATGATTTATTAAAAAATAATATGCCTACAATGGATTATTTTAATGCCAATCTATTCGATTCAAATCTTTCATATTTACTACCAAATTGTTT]

[-] EMBL CD153041             [TCTTCAGAAACGGCTGATTCGTTAGATCGTGGTGGTTGTGAAGGTCTACTTCGTGCAGCTCTGCGCCTAAGCAATCCCCCACCACTTTCATTGTCATATAAAAAAATCAGCAATATTACTACCACAACTAACATCACTGATAATACTATCACTGTTTCAAATGACGAATGGAATTGTAAATTTTTACCATTCTCAAATTCAAAATATTATTTATTTCAAAAGTTGGTCAGTGCAAACAGTTTGCAAAATAGTTTATGTGCCCAACTAATTTTAAGTTTAGGATTTACATTGGATCCAAGTTTAATTGAATACTTATTATTCTATCTGTGCTGCTGGAGGTGTGTAAAAACGAAAACCAATCCCAATGAAAATTCATTTACATCACGAGCCTCAGTGAAATCCGCCAAATCATCATCATTTGCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD153129             [                                                                                             TCATATAAGAGAATCGCCAATATTACTACCACAACTAACATCACTGATAATACTATCACTGTTTCAAATGACGAATGGAATTGTAAATTTTTACCATTCTCAAATTCAAAATATTATTTATTTCAAAAGTTGGTCAGTGCAAACAGTTTGCAAAATAGTTTATGTGCCCAACTAATTTTAAGTTTAGGATTTACATTGGATCCAAGTTTAATTGAATACTTATTATTCTATCTGTGCTGCTGGAGGTGTGTAGAAACGAAAACCAATCCCAATGAAAATTCATTTACATCACGAGCCTCAGTGAAATCCGCCAAATCATCATCATTTGCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD167797             [                                                                                                                                                                                                                                                                                                                                                                                                     CTCAGTGAAATCCGCCAAATCATCATCATTTGCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACAACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATTCTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAATCATCAAATGGATTCAACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGCCTAGTTTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGAAATCTGCTATGGTTAGTGAATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGAGCACAGCTAGGCGAAATCGTGAACATGATGCTGAAAAATGATGATCTTCAATGTTTAGACTTGCTGATTAGTCTTTGTGAATGTATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AW017215             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAATCGTGTCGATACATAATAAATATTTACTAATGAGTAATCATCAAATGGATTCAACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGTCTAGTTTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGTAATCTGCTATGGTTAGTGAATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGAGCACAGCTAGGCGAAATCGTGAACATGATGCTGAAAAATGATGATCTTCAATGTTTAGACTTGCTGATTAGTCTTTGTGAATGTATATTCTGTACATTTCGGTTTCCTCCAACTAATCGTTTGTCACCTTCAACCACCACCACACTTAATCAATCTATGAAGCTAAGTGAATCAAGCCATTATTACCACTTGACACGGTTTCGTGATGGATCAAAAAACTCTGGTGGTTTAAATACTAATGGTCATCTGCG                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD123607             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CAACTAATCGTTTGTCACTTTCAACCACCACCACACTTAATCAATCTATGAAGCTAAGTGAATCAAGCCATTATTACCACTTGACACGGTTTCGTGATGGATCAAAAAACTCTGGTGTTTTAAATACTAATGGTCATCTGCGCTATCATTATGGTAACCATCAAACATTCGGCGTAATACTTCTATCACCTACCCAATGTATGCAATTAGCTAATAGTTTTGTACAGTTAACATCTCGATTGATGTTCATGATGAATGATGCGAACTTACCCAGTGAATCATCATCATTGTCTTCGTGTACCCATTTGTATGTATTTGGTCGATCTCGAAATCTATTGAATTTATTATTCAGCACTATTCAATCAACAATTTTCCGTTCAGCTATTATGAGGTTAATTCCAAAAGTGATAATGTCTAGTCGTTTATATCCGTACACGGATGATTTATTAAAAAATAATATGCCTACAATGGATTATTTTAATGCCAATCTATTCGATTCAAATCTTTCATATTTACTACCAAATTGTTT]


>consensus_8143#0 TCTTCAGAAACGGCTGATTCGTTAGATCGTGGTGGTTGTGAAGGTCTACTTCGTGCAGCT CTGCGCCTAAGCAATCCCCCACCACTTTCATTGTCATATAAAAAAATCAGCAATATTACT ACCACAACTAACATCACTGATAATACTATCACTGTTTCAAATGACGAATGGAATTGTAAA TTTTTACCATTCTCAAATTCAAAATATTATTTATTTCAAAAGTTGGTCAGTGCAAACAGT TTGCAAAATAGTTTATGTGCCCAACTAATTTTAAGTTTAGGATTTACATTGGATCCAAGT TTAATTGAATACTTATTATTCTATCTGTGCTGCTGGAGGTGTGTAAAAACGAAAACCAAT CCCAATGAAAATTCATTTACATCACGAGCCTCAGTGAAATCCGCCAAATCATCATCATTT GCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTT ATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACA ACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATT CTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAAT CATCAAATGGATTCAACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGT CTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGCCTAGTTTA GATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGAAATCTGCTATGGTTAGTGAAT AAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGA GCACAGCTAGGCGAAATCGTGAACATGATGCTGAAAAATGATGATCTTCAATGTTTAGAC TTGCTGATTAGTCTTTGTGAATGTATATTCTGTACATTTCGGTTTCCTCCAACTAATCGT TTGTCACCTTCAACCACCACCACACTTAATCAATCTATGAAGCTAAGTGAATCAAGCCAT TATTACCACTTGACACGGTTTCGTGATGGATCAAAAAACTCTGGTGGTTTAAATACTAAT GGTCATCTGCGCTATCATTATGGTAACCATCAAACATTCGGCGTAATACTTCTATCACCT ACCCAATGTATGCAATTAGCTAATAGTTTTGTACAGTTAACATCTCGATTGATGTTCATG ATGAATGATGCGAACTTACCCAGTGAATCATCATCATTGTCTTCGTGTACCCATTTGTAT GTATTTGGTCGATCTCGAAATCTATTGAATTTATTATTCAGCACTATTCAATCAACAATT TTCCGTTCAGCTATTATGAGGTTAATTCCAAAAGTGATAATGTCTAGTCGTTTATATCCG TACACGGATGATTTATTAAAAAATAATATGCCTACAATGGATTATTTTAATGCCAATCTA TTCGATTCAAATCTTTCATATTTACTACCAAATTGTTT



consensusID : consensus_8143#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence
                              [TTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACAACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATTCTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAATCATCAAATGGATTCGACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGTCTAGTTTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGTAATCTGCTATGGTTAGTGAATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGAGCACAGCTAGGCGAAATCGTGACATGATGCTGAAAAATGATGATCTTCAATGTTTAGACTTGCTGATTAGTCTTTGTGAATGTATATTCTGCATTTCGGCGTGTCTGCGGGATCCTC]

[-] EMBL CD125828             [TTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACAACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATTCTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAATCATCAAATGGATTCGACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGTCTAGTTTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGTAATCTGCTATGGTTAGTGAATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGAGCACAGCTAGGCGAAATCGTGACATGATGCTGAAAAATGATGATCTTCAATGTTTAGACTTGCTGATTAGTCTTTGTGAATGTATATTCTGCATTTCGGCGTGTCTGCGGGATCCTC]


>consensus_8143#1 TTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCA ACAACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGAT ATTCTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGT AATCATCAAATGGATTCGACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAAT GGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGTCTAGT TTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGTAATCTGCTATGGTTAGTG AATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTG GGAGCACAGCTAGGCGAAATCGTGACATGATGCTGAAAAATGATGATCTTCAATGTTTAG ACTTGCTGATTAGTCTTTGTGAATGTATATTCTGCATTTCGGCGTGTCTGCGGGATCCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8143#0      TCTTCAGAAACGGCTGATTCGTTAGATCGTGGTGGTTGTGAAGGTCTACTTCGTGCAGCT 60
consensus_8143#1      ------------------------------------------------------------
                                                                                  

consensus_8143#0      CTGCGCCTAAGCAATCCCCCACCACTTTCATTGTCATATAAAAAAATCAGCAATATTACT 120
consensus_8143#1      ------------------------------------------------------------
                                                                                  

consensus_8143#0      ACCACAACTAACATCACTGATAATACTATCACTGTTTCAAATGACGAATGGAATTGTAAA 180
consensus_8143#1      ------------------------------------------------------------
                                                                                  

consensus_8143#0      TTTTTACCATTCTCAAATTCAAAATATTATTTATTTCAAAAGTTGGTCAGTGCAAACAGT 240
consensus_8143#1      ------------------------------------------------------------
                                                                                  

consensus_8143#0      TTGCAAAATAGTTTATGTGCCCAACTAATTTTAAGTTTAGGATTTACATTGGATCCAAGT 300
consensus_8143#1      ------------------------------------------------------------
                                                                                  

consensus_8143#0      TTAATTGAATACTTATTATTCTATCTGTGCTGCTGGAGGTGTGTAAAAACGAAAACCAAT 360
consensus_8143#1      ------------------------------------------------------------
                                                                                  

consensus_8143#0      CCCAATGAAAATTCATTTACATCACGAGCCTCAGTGAAATCCGCCAAATCATCATCATTT 420
consensus_8143#1      ------------------------------------------------------------
                                                                                  

consensus_8143#0      GCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTT 480
consensus_8143#1      ---------------------------------------------------------TTT 3
                                                                               ***

consensus_8143#0      ATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACA 540
consensus_8143#1      ATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACA 63
                      ************************************************************

consensus_8143#0      ACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATT 600
consensus_8143#1      ACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATT 123
                      ************************************************************

consensus_8143#0      CTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAAT 660
consensus_8143#1      CTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAAT 183
                      ************************************************************

consensus_8143#0      CATCAAATGGATTCAACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGT 720
consensus_8143#1      CATCAAATGGATTCGACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGT 243
                      ************** *********************************************

consensus_8143#0      CTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGCCTAGTTTA 780
consensus_8143#1      CTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGTCTAGTTTA 303
                      *************************************************** ********

consensus_8143#0      GATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGAAATCTGCTATGGTTAGTGAAT 840
consensus_8143#1      GATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGTAATCTGCTATGGTTAGTGAAT 363
                      ************************************** *********************

consensus_8143#0      AAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGA 900
consensus_8143#1      AAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGA 423
                      ************************************************************

consensus_8143#0      GCACAGCTAGGCGAAATCGTGAACATGATGCTGAAAAATGATGATCTTCAATGTTTAGAC 960
consensus_8143#1      GCACAGCTAGGCGAAATCGTGA-CATGATGCTGAAAAATGATGATCTTCAATGTTTAGAC 482
                      ********************** *************************************

consensus_8143#0      TTGCTGATTAGTCTTTGTGAATGTATATTCTGTACATTTCGGTTTCCTCCAACTAATCGT 1020
consensus_8143#1      TTGCTGATTAGTCTTTGTGAATGTATATTCTG--CATTTCGGCGTG-TCTGCGGGATCCT 539
                      ********************************  ********  *  **      *** *

consensus_8143#0      TTGTCACCTTCAACCACCACCACACTTAATCAATCTATGAAGCTAAGTGAATCAAGCCAT 1080
consensus_8143#1      C----------------------------------------------------------- 540
                                                                                  

consensus_8143#0      TATTACCACTTGACACGGTTTCGTGATGGATCAAAAAACTCTGGTGGTTTAAATACTAAT 1140
consensus_8143#1      ------------------------------------------------------------
                                                                                  

consensus_8143#0      GGTCATCTGCGCTATCATTATGGTAACCATCAAACATTCGGCGTAATACTTCTATCACCT 1200
consensus_8143#1      ------------------------------------------------------------
                                                                                  

consensus_8143#0      ACCCAATGTATGCAATTAGCTAATAGTTTTGTACAGTTAACATCTCGATTGATGTTCATG 1260
consensus_8143#1      ------------------------------------------------------------
                                                                                  

consensus_8143#0      ATGAATGATGCGAACTTACCCAGTGAATCATCATCATTGTCTTCGTGTACCCATTTGTAT 1320
consensus_8143#1      ------------------------------------------------------------
                                                                                  

consensus_8143#0      GTATTTGGTCGATCTCGAAATCTATTGAATTTATTATTCAGCACTATTCAATCAACAATT 1380
consensus_8143#1      ------------------------------------------------------------
                                                                                  

consensus_8143#0      TTCCGTTCAGCTATTATGAGGTTAATTCCAAAAGTGATAATGTCTAGTCGTTTATATCCG 1440
consensus_8143#1      ------------------------------------------------------------
                                                                                  

consensus_8143#0      TACACGGATGATTTATTAAAAAATAATATGCCTACAATGGATTATTTTAATGCCAATCTA 1500
consensus_8143#1      ------------------------------------------------------------
                                                                                  

consensus_8143#0      TTCGATTCAAATCTTTCATATTTACTACCAAATTGTTT 1538
consensus_8143#1      --------------------------------------
                                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)