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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8157#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 858 fasta sequence
[CCTCCAGGCCAANAATTCGGCACGAGGCACATTATCGAATGATGAACGAGTTGAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTACATGAACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATCTAATCGTTTCTACGAACGTGGTGTTGCTTTCCTTGCATCATCTCTTGCCTAAATTGTATAATCTCATAGTAAAATGATGGGACGGAAAAAAAAAGCATGACTCTTCATTTTTCAACTATTATTGGCGTTTACTGTTACGAATAAGAGATAAAAAGAGGACCAGTACTTTGTTATCATTATTTTGCGCCAATGTATTCATTATTAAAAAAAGATGTAATTCATTTGATGAAGCGATCAGATTGTTTTATGTTGTTGAATTATCCTACTATTTTTTAGTATTTTATGAGTTTCTATAACTTTCAAGCTTTTTTTCCCTCTCTTTCTCTCAATTATTGTCTGCCTGTTTGTCCAATTATTTGACTTTCTACATATCTATCAATGGTTTACCGGTCACTATTCTGCTACACTAGATTGCTTCATTCTAGTTATNCATGTGTTTGTTTATTCAAGGGGGGGTTATTATGATCTCTNTTCTGTGTTTTGTCTAGTTTATAACAATATTTCCTCTTTTGTATGACTTACAAAGGACAGGAACATTTATGCATCATTCTGTTTTTANGCGTTGNTTATTTTTATTATTAATAATTACCTGTTTCACCTTTTAC-TGTTACTATTTTGGNTGTCANNGTGCTGTCTTG-AC-TACTTCTTTTGGA-CTC-ATCC-TTTATATAT-C-CAT-ACA-TTATTC-TA-TCATTT-ATATCATGTATT]
[+] EMBL CD080117 [CCTCCAGGCCAANAATTCGGCACGAGGCACATTATCGAATGATGAACGAGTTGAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTACATGAACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATCTAATCGTTTCTACGAACGTGGTGTTGCTTTCCTTGCATCATCTCTTGCCTAAATTGTATAATCTCATAGTAAAATGATGGGACGGAAAAAAAAAGCATGACTCTTCATTTTTCAACTATTATTGGCGTTTACTGTTACGAATAAGAGATAAAAAGAGGACCAGTACTTTGTTATCATTATTTTGCGCCAATGTATTCATTATTAAAAAAAGATGTAATTCATTTGATGAAGCGATCAGATTGTTTTATGTTGTTGAATTATCCTACTATTTTTTAGTATTTTATGAGTTTCTATAACTTTCAAGCTTTTTTTCCCTCTCTTTCTCTCAATTATTGTCTGCCTGTTTGTCCAATTATTTGACTTTCTACATATCTATCAATGGTTTACCGGTCACTATTCTGCTACACTAGATTGCTTCATTCTAGTTATNCATGTGTTTGTTTATTCAAGGGGGGGTTATTATGATCTCTNTTCTGTGTTTTGTCTAGTTTATAACAATATTTCCTCTTTTGTATGACTTACAAAGGACAGGAACATTTATGCATCATTCTGTTTTTANGCGTTGNTTATTTTTATTATTAATAATTACCTGTTTCACCTTTTAC TGTTACTATTTTGGNTGTCANNGTGCTGTCTTG AC TACTTCTTTTGGA CTC ATCC TTTATATAT C CAT ACA TTATTC TA TCATTT ATATCAT ]
[-] EMBL CD073018 [ TATTTTGCGCCAATGTATTCATTATTAAAAAAAGATGTAATTCATTTGATGAAGCGATCAGATTGTTTTATGTTGTTGAATTATCCTACTATTTTTTAGTATTTTATGAGTTTCTATAACTTTCAAGCTTTTTTTCCCTCTCTTTCTCTCAATTATTGTCTGCCTGTTTGTCCAATTATTTGACTTTCTACATATCTATCAATGGTTTACCGGTCACTATTCTGCTACACTAGATTGCTTCATTCTAGTTAT CATGTGTTTGTTTATTCAA GGGGGGTTATTATGATCTCTTTTCTGTGTTTTGTCTAGTTTATAACAATATTTCCTCTTTTGTATGACTTACAAAGGACAGGAACATTTATGCATCATTCTGTTTTTAGGCGTTGTTTATTTTTATTATTAATAATTACCTGTTTCACCTTTTACTTGTTACTATTTTGGTGGTCAGGTTGCTGTCTTGTACTTACTTCTTTTGGATCTCTATCCTTTTATATATACACATAACATTTATTCTTATTCATTTAATATCCAGTATT]
consensusID : consensus_8157#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 603 fasta sequence
[GAGAGATATTCAGGTTTGGTTAGGTGGACTTTTTATGCCTGAGGCTTACATTACAGCTACTAGACAATTTGTTGCTCAATCTAATGGTTGGGCTCTTGAAGAATTATACTTAGATGTGGAACTTGTAATGATAGAAAAAGGTAAGAAACCACCTCAACTTCCTTCATCAAATTCTGGAGCGTTTGTTGTTCGAGATTTATGGTTAATGGGTGCAGAACCGTTGAACGCAACTACAATCCAATTATCAAGTTCCATTTCAGTTGAACTCCCAGTGACAGTATTAAAGTGGATCAAATTATCGAATGATGAACGAGTTGAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTACATGAACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATCTAATCGTTTCTACGAACGTGGTGTTGCTTTCCTTGCATCATCTCTTGCCTAAATTGTATAATCTCATAGTAAAATGATGGGACGGAAAAAAAAAGCATGACTCTTCATTTTTCAACTATTATTGGCGTTTACTGTTACGAATAAGAGATAANAAGAGGACCAGTACTTTGNTATCATTATTTT]
[+] EMBL CD078551 [GAGAGATATTCAGGTTTGGTTAGGTGGACTTTTTATGCCTGAGGCTTACATTACAGCTACTAGACAATTTGTTGCTCAATCTAATGGTTGGGCTCTTGAAGAATTATACTTAGATGTGGAACTTGTAATGATAGAAAAAGGTAAGAAACCACCTCAACTTCCTTCATCAAATTCTGGAGCGTTTGTTGTTCGAGATTTATGGTTAATGGGTGCAGAACCGTTGAACGCAACTACAATCCAATTATCAAGTTCCATTTCAGTTGAACTCCCAGTGACAGTATTAAAGTGGATCAAATTATCGAATGATGAACGAGTTGAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTACATGAACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATCTAATCGTTTCTACGAACGTGGTGTTGCTTTCCTTGCATCATCTCTTGCCTAAATTGTATAATCTCATAGTAAAATGATGGGACGGAAAAAAAAAGCATGACTCTTCATTTTTCAACTATTATTGGCGTTTACTGTTACGAATAAGAGATAANAAGAGGACCAGTACTTTGNTATCATTATTTT]
[+] EMBL CD167702 [ gATTCAGGTTTGGTTAGGTGGACTTTTTATGCCTGAGGCTTACATTACAGCTACTAGACAATTTGTTGCTCAATCTAATGGTTGGGCTCTTGAAGAATTATACTTAGATGTGGAACTTGTAATGATAGAAAAAGGTAAGAAACCACCTCAACTTCCTTCATCAAATTCT ]
[-] EMBL CD192797 [ GGATCAAATTATCGAATGATGAACGAGTTGAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTACATGAACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATCTAATCGTTTC ]
[+] EMBL CD131484 [ GAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTACATGGACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATCTAATCGTTTCTACGAACGTGGTGTTGCTTTCCTTACATCATCTCTTGCCTAAATTGTATAATCTCATAGTAAAAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8157#0 ------------------------------------------------------------
consensus_8157#1 GAGAGATATTCAGGTTTGGTTAGGTGGACTTTTTATGCCTGAGGCTTACATTACAGCTAC 60
consensus_8157#0 ------------------------------------------------------------
consensus_8157#1 TAGACAATTTGTTGCTCAATCTAATGGTTGGGCTCTTGAAGAATTATACTTAGATGTGGA 120
consensus_8157#0 ------------------------------------------------------------
consensus_8157#1 ACTTGTAATGATAGAAAAAGGTAAGAAACCACCTCAACTTCCTTCATCAAATTCTGGAGC 180
consensus_8157#0 ------------------------------------------------------------
consensus_8157#1 GTTTGTTGTTCGAGATTTATGGTTAATGGGTGCAGAACCGTTGAACGCAACTACAATCCA 240
consensus_8157#0 ------------------------CCTCCAGGCCAANAATTCGGCACGAGGCACATTATC 36
consensus_8157#1 ATTATCAAGTTCCATTTCAGTTGAACTCCCAGTGACAGTATTAAAGTGGATCAAATTATC 300
**** * * * * ** ******
consensus_8157#0 GAATGATGAACGAGTTGAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTA 96
consensus_8157#1 GAATGATGAACGAGTTGAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTA 360
************************************************************
consensus_8157#0 CATGAACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATC 156
consensus_8157#1 CATGAACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATC 420
************************************************************
consensus_8157#0 TAATCGTTTCTACGAACGTGGTGTTGCTTTCCTTGCATCATCTCTTGCCTAAATTGTATA 216
consensus_8157#1 TAATCGTTTCTACGAACGTGGTGTTGCTTTCCTTGCATCATCTCTTGCCTAAATTGTATA 480
************************************************************
consensus_8157#0 ATCTCATAGTAAAATGATGGGACGGAAAAAAAAAGCATGACTCTTCATTTTTCAACTATT 276
consensus_8157#1 ATCTCATAGTAAAATGATGGGACGGAAAAAAAAAGCATGACTCTTCATTTTTCAACTATT 540
************************************************************
consensus_8157#0 ATTGGCGTTTACTGTTACGAATAAGAGATAAAAAGAGGACCAGTACTTTGTTATCATTAT 336
consensus_8157#1 ATTGGCGTTTACTGTTACGAATAAGAGATAANAAGAGGACCAGTACTTTGNTATCATTAT 600
******************************* ****************** *********
consensus_8157#0 TTTGCGCCAATGTATTCATTATTAAAAAAAGATGTAATTCATTTGATGAAGCGATCAGAT 396
consensus_8157#1 TTT--------------------------------------------------------- 603
***
consensus_8157#0 TGTTTTATGTTGTTGAATTATCCTACTATTTTTTAGTATTTTATGAGTTTCTATAACTTT 456
consensus_8157#1 ------------------------------------------------------------
consensus_8157#0 CAAGCTTTTTTTCCCTCTCTTTCTCTCAATTATTGTCTGCCTGTTTGTCCAATTATTTGA 516
consensus_8157#1 ------------------------------------------------------------
consensus_8157#0 CTTTCTACATATCTATCAATGGTTTACCGGTCACTATTCTGCTACACTAGATTGCTTCAT 576
consensus_8157#1 ------------------------------------------------------------
consensus_8157#0 TCTAGTTATNCATGTGTTTGTTTATTCAAGGGGGGGTTATTATGATCTCTNTTCTGTGTT 636
consensus_8157#1 ------------------------------------------------------------
consensus_8157#0 TTGTCTAGTTTATAACAATATTTCCTCTTTTGTATGACTTACAAAGGACAGGAACATTTA 696
consensus_8157#1 ------------------------------------------------------------
consensus_8157#0 TGCATCATTCTGTTTTTANGCGTTGNTTATTTTTATTATTAATAATTACCTGTTTCACCT 756
consensus_8157#1 ------------------------------------------------------------
consensus_8157#0 TTTACTGTTACTATTTTGGNTGTCANNGTGCTGTCTTGACTACTTCTTTTGGACTCATCC 816
consensus_8157#1 ------------------------------------------------------------
consensus_8157#0 TTTATATATCCATACATTATTCTATCATTTATATCATGTATT 858
consensus_8157#1 ------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||